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natural_source_ncbi_code:"333760"

Filter By

Current Database

  • EMDB [32]

Current status

  • REL [32]

Sample type

  • Protein [22]
  • Virus [18]
  • Complex [16]
  • Ligand [9]
  • Sample [3]

Organism

  • Alphapapillomavirus 9 [32]
  • Homo sapiens [14]
  • Mus musculus [2]
  • Escherichia coli [1]
  • Oryctolagus cuniculus [1]

EM Method

  • Single-particle [32]

Resolution

  • < 2Å [3]
  • ≥ 2Å and < 3Å [6]
  • ≥ 3Å and < 4Å [9]
  • ≥ 4Å and < 5Å [7]
  • ≥ 5Å and < 6Å [1]
  • ≥ 6Å and < 8Å [2]
  • ≥ 8Å and < 12Å [1]
  • ≥ 12Å and < 16Å [3]

Model molecular weight

  • 100-250 kDa [8]
  • 250-500 kDa [7]
  • > 10 MDa [5]

Release Date

  • 2026 [5]
  • 2025 [6]
  • 2024 [6]
  • 2023 [2]
  • 2021 [1]
  • 2020 [5]
  • 2019 [2]
  • 2018 [1]
  • 2017 [1]
  • 2015 [2]
  • 2014 [1]

Author by name

  • Hafenstein SL [6]
  • Christensen ND [5]
  • Fan F [5]
  • Gao R [5]
  • Langley CH [5]
  • Li Z [5]
  • Lin M [5]
  • Luo C [5]
  • Lv Y [5]
  • Qiu J [5]
  • Wang Q [5]
  • Wang Z [5]
  • Xu W [5]
  • Ye F [5]
  • Yu X [5]
  • Ashley RE [4]
  • Brendle SA [4]
  • Bywaters SM [4]
  • Guan J [4]
  • Hafenstein S [4]
  • Zhang R [4]
  • Caban ME [3]
  • Carter JJ [3]
  • Galloway DA [3]
  • Hua C [3]
  • Hurlburt NK [3]
  • Jiang S [3]
  • Kieltyka J [3]
  • Kinzelman R [3]
  • Lewis P [3]
  • Lu L [3]
  • Pancera M [3]
  • Rodarte JV [3]
  • Scherer EM [3]
  • Singh S [3]
  • Smith RA [3]
  • Sun F [3]
  • Tai L [3]
  • Wipf GC [3]
  • Ye S [3]
  • Zhu Y [3]
  • Chakraborty D [2]
  • Conway JF [2]
  • Gulati NM [2]
  • He MZ [2]
  • Huang W [2]
  • Kater L [2]
  • Kempf G [2]
  • Lee H [2]
  • Li S [2]
  • Li SW [2]
  • Makhov AM [2]
  • Miyagi M [2]
  • Nie J [2]
  • Sandate CR [2]
  • Smith JG [2]
  • Stewart PL [2]
  • Thoma NH [2]
  • Wiens ME [2]
  • Baddock HT [1]
  • Bator CM [1]
  • Bratkowski M [1]
  • Bratkowski MA [1]
  • Buck CB [1]
  • Cardone G [1]
  • Chakrabory D [1]
  • Chang L [1]
  • Chen Y [1]
  • Cheng N [1]
  • Christenson ND [1]
  • Das C [1]
  • Davisson VJ [1]
  • Demarco AG [1]
  • Dvoretzky I [1]
  • Eaton D [1]
  • Foe IT [1]
  • Fu W [1]
  • Gabel CA [1]
  • Goetschius DJ [1]
  • Gu Y [1]
  • Hall MC [1]
  • Hao Q [1]
  • Hartmann SR [1]
  • He M [1]
  • Hu J [1]
  • Huang WJ [1]
  • Iyer S [1]
  • Jensvold ZD [1]
  • Jia Z [1]
  • Kenny S [1]
  • Li D [1]
  • Li T [1]
  • Lin TY [1]
  • Lowy DR [1]
  • Mafi A [1]
  • Mosalaganti S [1]
  • Moyer AL [1]
  • Nie L [1]
  • Nile AH [1]
  • Ning T [1]

Author by ORCID

  • Yu X [5]
  • Wang Z [5]
  • Hafenstein SL [5]
  • Luo C [5]
  • Ye F [5]
  • Langley CH [5]
  • Bywaters SM [4]
  • Carter JJ [3]
  • Galloway DA [3]
  • Smith JG [2]
  • Li S [2]
  • Huang W [2]
  • Lee H [2]
  • Conway JF [2]
  • Guan J [2]
  • Hao Q [1]
  • Hall MC [1]
  • Wang Y [1]
  • Das C [1]
  • Foe IT [1]
  • Gu Y [1]
  • He M [1]
  • Jensvold ZD [1]
  • Mosalaganti S [1]
  • Goetschius DJ [1]
  • Nile AH [1]
  • Zheng Q [1]
  • Xia N [1]
  • Wang JCK [1]
  • Davisson VJ [1]
  • Buck CB [1]
  • Kenny S [1]
  • Bratkowski M [1]
  • Eaton D [1]
  • Cardone G [1]

Journal

  • TO BE PUBLISHED [9]
  • NAT COMMUN [6]
  • BIORXIV [3]
  • PLOS PATHOG [3]
  • J VIROL [2]
  • NPJ VACCINES [2]
  • PATHOG IMMUN [2]
  • VIRUSES [2]
  • MBIO [1]
  • SCI REP [1]
  • STRUCTURE [1]

Software

  • CRYOSPARC [5]
  • AUTO3DEM, RELION, EMAN2 [2]
  • AUTO3DEM [1]
  • CHIMERA, PYMOL, VMD, NAMD, MDFF, BSOFT [1]
  • CISTEM [1]
  • CTFFIND [1]
  • GCTF [1]
  • SITUS, CHIMERA [1]

Microscope

  • FEI TITAN KRIOS [14]
  • TFS KRIOS [7]
  • TFS GLACIOS [4]
  • FEI POLARA 300 [2]
  • FEI TECNAI F30 [2]
  • JEOL 2100 [2]
  • FEI/PHILIPS CM200FEG [1]

Electron Source

  • FIELD EMISSION GUN [30]
  • LAB6 [2]

Film or detector model

  • GATAN K3 6K X 4K [10]
  • FEI FALCON IV 4K X 4K [8]
  • FEI FALCON II 4K X 4K [4]
  • GATAN K3 BIOQUANTUM 6K X 4K [3]
  • DIRECT ELECTRON DE-20 5K X 3K [2]
  • FEI FALCON III 4K X 4K [2]
  • GATAN ULTRASCAN 4000 4K X 4K [2]
  • KODAK SO-163 FILM [1]

External links

  • PDB [32]
  • UniProt [21]
  • PDBe-Kb [20]
  • AlphaFold DB [14]
  • Gene Ontology [13]
  • Pfam [13]
  • InterPro [12]
  • ChEBI [9]
  • ChEMBL [9]
  • DrugBank [9]
  • Complex Portal [1]
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Showing 1 - 10 of 32. Page 1 of 4
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EMD-70163
Download Map
3D View
Subparticle map of HPV16 pentavalent capsomer
Focused map
CryoEM
Release date: May 6, 2026
Resolution: 1.9 Å
EM Method: Single-particle

Langley CH, Hafenstein SL

To Be Published

EMD-70164
Download Map
3D View
Subparticle map of HPV16 hexavalent capsomer
CryoEM
Focused map
Release date: May 6, 2026
Resolution: 1.92 Å
EM Method: Single-particle

Langley CH, Hafenstein SL

To Be Published

EMD-70167
Download Map
3D View
Subparticle map of HPV16 hexavalent capsomer
Consensus map
CryoEM
Release date: May 6, 2026
Resolution: 2.42 Å
EM Method: Single-particle

Langley CH, Hafenstein SL

To Be Published

EMD-70186
Download Map
3D View
HPV16 capsid bound to heparin
CryoEM
Release date: May 6, 2026
Resolution: 2.76 Å
EM Method: Single-particle

Langley CH, Hafenstein SL

To Be Published

EMD-49960
Download Map
3D View
Atomic resolution cryoEM structure of HPV16 bound to heparin
Composite map
CryoEM
Release date: April 29, 2026
Resolution: 1.9 Å
EM Method: Single-particle
Fitted PDBs: 9nzu
Q-score: 0.785

Langley CH, Hafenstein SL

To Be Published

EMD-72538
Download Map
3D View
Human papillomavirus purified from lysosomes
CryoEM
Release date: Dec. 10, 2025
Resolution: 6.3 Å
EM Method: Single-particle

Sutanto R, Rana J, Tsai B, Mosalaganti S

bioRxiv (2025) [ Pubmed: 40949969 DOI: doi:10.1101/2025.09.06.674660 ]

EMD-48344
Download Map
3D View
D24.1M01 Fab bound to HPV16 L1 pentamer
CryoEM
Release date: Aug. 20, 2025
Resolution: 3.0 Å
EM Method: Single-particle
Fitted PDBs: 9ml1
Q-score: 0.451

Carter JJ, Hurlburt NK, Scherer EM, Singh S, Rodarte JV, Smith RA, Lewis P, Kinzelman R, Kieltyka J, Caban ME, Wipf GC, Pancera M, Galloway DA

PLoS Pathog (2025) 21 pp. e1013086-e1013086 [ Pubmed: 41118367 DOI: doi:10.1371/journal.ppat.1013086 ]

EMD-48345
Download Map
3D View
A7M08 Fab bound to HPV16 L1 pentamer
CryoEM
Release date: Aug. 20, 2025
Resolution: 2.7 Å
EM Method: Single-particle
Fitted PDBs: 9ml2
Q-score: 0.53

Carter JJ, Hurlburt NK, Scherer EM, Singh S, Rodarte JV, Smith RA, Lewis P, Kinzelman R, Kieltyka J, Caban ME, Wipf GC, Pancera M, Galloway DA

PLoS Pathog (2025) 21 pp. e1013086-e1013086 [ Pubmed: 41118367 DOI: doi:10.1371/journal.ppat.1013086 ]

EMD-48346
Download Map
3D View
B25M05 Fab bound to HPV16 L1 pentamer
CryoEM
Release date: Aug. 20, 2025
Resolution: 2.9 Å
EM Method: Single-particle
Fitted PDBs: 9ml3
Q-score: 0.557

Carter JJ, Hurlburt NK, Scherer EM, Singh S, Rodarte JV, Smith RA, Lewis P, Kinzelman R, Kieltyka J, Caban ME, Wipf GC, Pancera M, Galloway DA

PLoS Pathog (2025) 21 pp. e1013086-e1013086 [ Pubmed: 41118367 DOI: doi:10.1371/journal.ppat.1013086 ]

EMD-39195
Download Map
3D View
HPV16 L1 pentamer in complex with Fab F5-196
CryoEM
Release date: Feb. 26, 2025
Resolution: 2.86 Å
EM Method: Single-particle
Fitted PDBs: 8yeh
Q-score: -0.024

Hu J, Jia Z, Wang M, Nie L, Fu W, Zhang Q, Qin H, Nie J, Xu X, Xu L, Wang F, Chen Y, Xing B, Li T, Li D, Li S, Xia N, Wang X, Huang W

NPJ Vaccines (2025) 10 pp. 55-55 [ Pubmed: 40118915 DOI: doi:10.1038/s41541-025-01106-z ]

Sort by: Download
Showing 1 - 10 of 32. Page 1 of 4
Display:
Statistics
×

Download











































Preview first 10
Download

Filter By

Current Database

  • EMDB [32]

Current status

  • REL [32]

Sample type

  • Protein [22]
  • Virus [18]
  • Complex [16]
  • Ligand [9]
  • Sample [3]

Organism

  • Alphapapillomavirus 9 [32]
  • Homo sapiens [14]
  • Mus musculus [2]
  • Escherichia coli [1]
  • Oryctolagus cuniculus [1]

EM Method

  • Single-particle [32]

Resolution

  • < 2Å [3]
  • ≥ 2Å and < 3Å [6]
  • ≥ 3Å and < 4Å [9]
  • ≥ 4Å and < 5Å [7]
  • ≥ 5Å and < 6Å [1]
  • ≥ 6Å and < 8Å [2]
  • ≥ 8Å and < 12Å [1]
  • ≥ 12Å and < 16Å [3]

Model molecular weight

  • 100-250 kDa [8]
  • 250-500 kDa [7]
  • > 10 MDa [5]

Release Date

  • 2026 [5]
  • 2025 [6]
  • 2024 [6]
  • 2023 [2]
  • 2021 [1]
  • 2020 [5]
  • 2019 [2]
  • 2018 [1]
  • 2017 [1]
  • 2015 [2]
  • 2014 [1]

Author by name

  • Hafenstein SL [6]
  • Christensen ND [5]
  • Fan F [5]
  • Gao R [5]
  • Langley CH [5]
  • Li Z [5]
  • Lin M [5]
  • Luo C [5]
  • Lv Y [5]
  • Qiu J [5]
  • Wang Q [5]
  • Wang Z [5]
  • Xu W [5]
  • Ye F [5]
  • Yu X [5]
  • Ashley RE [4]
  • Brendle SA [4]
  • Bywaters SM [4]
  • Guan J [4]
  • Hafenstein S [4]
  • Zhang R [4]
  • Caban ME [3]
  • Carter JJ [3]
  • Galloway DA [3]
  • Hua C [3]
  • Hurlburt NK [3]
  • Jiang S [3]
  • Kieltyka J [3]
  • Kinzelman R [3]
  • Lewis P [3]
  • Lu L [3]
  • Pancera M [3]
  • Rodarte JV [3]
  • Scherer EM [3]
  • Singh S [3]
  • Smith RA [3]
  • Sun F [3]
  • Tai L [3]
  • Wipf GC [3]
  • Ye S [3]
  • Zhu Y [3]
  • Chakraborty D [2]
  • Conway JF [2]
  • Gulati NM [2]
  • He MZ [2]
  • Huang W [2]
  • Kater L [2]
  • Kempf G [2]
  • Lee H [2]
  • Li S [2]
  • Li SW [2]
  • Makhov AM [2]
  • Miyagi M [2]
  • Nie J [2]
  • Sandate CR [2]
  • Smith JG [2]
  • Stewart PL [2]
  • Thoma NH [2]
  • Wiens ME [2]
  • Baddock HT [1]
  • Bator CM [1]
  • Bratkowski M [1]
  • Bratkowski MA [1]
  • Buck CB [1]
  • Cardone G [1]
  • Chakrabory D [1]
  • Chang L [1]
  • Chen Y [1]
  • Cheng N [1]
  • Christenson ND [1]
  • Das C [1]
  • Davisson VJ [1]
  • Demarco AG [1]
  • Dvoretzky I [1]
  • Eaton D [1]
  • Foe IT [1]
  • Fu W [1]
  • Gabel CA [1]
  • Goetschius DJ [1]
  • Gu Y [1]
  • Hall MC [1]
  • Hao Q [1]
  • Hartmann SR [1]
  • He M [1]
  • Hu J [1]
  • Huang WJ [1]
  • Iyer S [1]
  • Jensvold ZD [1]
  • Jia Z [1]
  • Kenny S [1]
  • Li D [1]
  • Li T [1]
  • Lin TY [1]
  • Lowy DR [1]
  • Mafi A [1]
  • Mosalaganti S [1]
  • Moyer AL [1]
  • Nie L [1]
  • Nile AH [1]
  • Ning T [1]

Author by ORCID

  • Yu X [5]
  • Wang Z [5]
  • Hafenstein SL [5]
  • Luo C [5]
  • Ye F [5]
  • Langley CH [5]
  • Bywaters SM [4]
  • Carter JJ [3]
  • Galloway DA [3]
  • Smith JG [2]
  • Li S [2]
  • Huang W [2]
  • Lee H [2]
  • Conway JF [2]
  • Guan J [2]
  • Hao Q [1]
  • Hall MC [1]
  • Wang Y [1]
  • Das C [1]
  • Foe IT [1]
  • Gu Y [1]
  • He M [1]
  • Jensvold ZD [1]
  • Mosalaganti S [1]
  • Goetschius DJ [1]
  • Nile AH [1]
  • Zheng Q [1]
  • Xia N [1]
  • Wang JCK [1]
  • Davisson VJ [1]
  • Buck CB [1]
  • Kenny S [1]
  • Bratkowski M [1]
  • Eaton D [1]
  • Cardone G [1]

Journal

  • TO BE PUBLISHED [9]
  • NAT COMMUN [6]
  • BIORXIV [3]
  • PLOS PATHOG [3]
  • J VIROL [2]
  • NPJ VACCINES [2]
  • PATHOG IMMUN [2]
  • VIRUSES [2]
  • MBIO [1]
  • SCI REP [1]
  • STRUCTURE [1]

Software

  • CRYOSPARC [5]
  • AUTO3DEM, RELION, EMAN2 [2]
  • AUTO3DEM [1]
  • CHIMERA, PYMOL, VMD, NAMD, MDFF, BSOFT [1]
  • CISTEM [1]
  • CTFFIND [1]
  • GCTF [1]
  • SITUS, CHIMERA [1]

Microscope

  • FEI TITAN KRIOS [14]
  • TFS KRIOS [7]
  • TFS GLACIOS [4]
  • FEI POLARA 300 [2]
  • FEI TECNAI F30 [2]
  • JEOL 2100 [2]
  • FEI/PHILIPS CM200FEG [1]

Electron Source

  • FIELD EMISSION GUN [30]
  • LAB6 [2]

Film or detector model

  • GATAN K3 6K X 4K [10]
  • FEI FALCON IV 4K X 4K [8]
  • FEI FALCON II 4K X 4K [4]
  • GATAN K3 BIOQUANTUM 6K X 4K [3]
  • DIRECT ELECTRON DE-20 5K X 3K [2]
  • FEI FALCON III 4K X 4K [2]
  • GATAN ULTRASCAN 4000 4K X 4K [2]
  • KODAK SO-163 FILM [1]

External links

  • PDB [32]
  • UniProt [21]
  • PDBe-Kb [20]
  • AlphaFold DB [14]
  • Gene Ontology [13]
  • Pfam [13]
  • InterPro [12]
  • ChEBI [9]
  • ChEMBL [9]
  • DrugBank [9]
  • Complex Portal [1]