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natural_source_ncbi_code:"322710"

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Current Database

  • EMDB [34]

Current status

  • REL [34]

Sample type

  • Complex [34]
  • Protein [34]
  • Ligand [24]

Organism

  • Azotobacter vinelandii [34]
  • Discosoma sp. lw-2004 [1]
  • Azotobacter vinelandii [1]

EM Method

  • Single-particle [31]
  • Helical reconstruction [3]

Resolution

  • < 2Å [3]
  • ≥ 2Å and < 3Å [17]
  • ≥ 3Å and < 4Å [11]
  • ≥ 6Å and < 8Å [1]
  • ≥ 12Å and < 16Å [1]
  • ≥ 16Å and < 20Å [1]

Model molecular weight

  • 100-250 kDa [18]
  • 250-500 kDa [6]
  • 500-1000 kDa [3]
  • 1-2 MDa [1]

Release Date

  • 2026 [6]
  • 2025 [8]
  • 2024 [5]
  • 2023 [3]
  • 2022 [11]
  • 2019 [1]

Author by name

  • Cook BD [10]
  • Herzik Jr Ma [10]
  • Herzik MA [10]
  • Nguyen HPM [10]
  • Rutledge HL [10]
  • Tezcan FA [10]
  • Warmack RA [10]
  • Maggiolo AO [9]
  • Cook B [8]
  • Einsle O [7]
  • Shen Y [7]
  • Zhang L [7]
  • Zhang T [7]
  • Brandon K [4]
  • Gonen S [4]
  • Hu Y [4]
  • Neumann B [4]
  • Ribbe MW [4]
  • Suder DS [4]
  • Rees DC [3]
  • Wenke BB [3]
  • Brandon KA [2]
  • Dean DR [2]
  • Ermler U [2]
  • Gorecki K [2]
  • Howard JB [2]
  • Lee CC [2]
  • Martin Del Campo Js [2]
  • Martin Del Campo Js [2]
  • Orta A [2]
  • Quechol R [2]
  • Schneider FF [2]
  • Vonck J [2]
  • Wiig JA [2]
  • Yang Y [2]
  • Aziz I [1]
  • Bruenle S [1]
  • Brunle S [1]
  • Bueno Batista M [1]
  • Dixon R [1]
  • Eisinger ML [1]
  • Ghilarov D [1]
  • Kaltwasser S [1]
  • Kayastha K [1]
  • Khera R [1]
  • Langer JD [1]
  • Lawson DM [1]
  • Mills DJ [1]
  • Peters JW [1]
  • Poppe J [1]
  • Richardson J [1]
  • Spatzal T [1]
  • Webster MW [1]

Author by ORCID

  • Herzik Jr Ma [10]
  • Nguyen HPM [10]
  • Tezcan FA [10]
  • Cook BD [10]
  • Rutledge HL [10]
  • Zhang L [7]
  • Einsle O [7]
  • Shen Y [7]
  • Gonen S [4]
  • Suder DS [4]
  • Ribbe MW [4]
  • Hu Y [4]
  • Neumann B [4]
  • Warmack RA [3]
  • Rees DC [3]
  • Quechol R [2]
  • Vonck J [2]
  • Martin Del Campo Js [2]
  • Dean DR [2]
  • Gorecki K [2]
  • Orta A [2]
  • Maggiolo AO [2]
  • Schneider FF [2]
  • Brandon K [2]
  • Brandon KA [2]
  • Kaltwasser S [1]
  • Langer JD [1]
  • Khera R [1]
  • Dixon R [1]
  • Bueno Batista M [1]
  • Lawson DM [1]
  • Brunle S [1]
  • Mills DJ [1]

Journal

  • SCIENCE [10]
  • NAT CHEM BIOL [7]
  • STRUCTURE [7]
  • NAT CATAL [2]
  • NAT COMMUN [2]
  • TO BE PUBLISHED [2]
  • FEBS J [1]
  • J.INORG.BIOCHEM. [1]
  • NAT PROTOC [1]
  • PNAS [1]

Software

  • CRYOSPARC [18]
  • RELION [11]
  • UCSF CHIMERAX [1]

Microscope

  • TFS KRIOS [25]
  • FEI TITAN KRIOS [6]
  • JEOL 2100F [2]
  • JEOL 3200FSC [1]

Electron Source

  • FIELD EMISSION GUN [34]

Film or detector model

  • GATAN K3 6K X 4K [19]
  • GATAN K2 SUMMIT 4K X 4K [5]
  • GATAN K2 QUANTUM 4K X 4K [4]
  • TFS FALCON 4I 4K X 4K [3]
  • OTHER [2]
  • FEI FALCON IV 4K X 4K [1]

External links

  • PDB [34]
  • AlphaFold DB [30]
  • PDBe-Kb [30]
  • UniProt [30]
  • ChEBI [24]
  • InterPro [24]
  • Gene Ontology [23]
  • ChEMBL [22]
  • DrugBank [22]
  • EMPIAR [8]
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Showing 1 - 10 of 34. Page 1 of 4
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EMD-52782
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3D View
Nitrogenase maturase NifEN in complex with the cofactor chaperone NifX
CryoEM
Release date: March 4, 2026
Resolution: 2.16 Å
EM Method: Single-particle
Fitted PDBs: 9ian
Q-score: 0.635

Schneider FF, Martin Del Campo JS, Zhang L, Dean DR, Einsle O

Nat Chem Biol (2026) 22 pp. 822-828 [ Pubmed: 41872497 DOI: doi:10.1038/s41589-026-02179-0 ]

EMD-52783
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3D View
Nitrogenase maturase NifEN
CryoEM
Release date: March 4, 2026
Resolution: 2.14 Å
EM Method: Single-particle
Fitted PDBs: 9iao
Q-score: 0.669

Schneider FF, Martin Del Campo JS, Zhang L, Dean DR, Einsle O

Nat Chem Biol (2026) 22 pp. 822-828 [ Pubmed: 41872497 DOI: doi:10.1038/s41589-026-02179-0 ]

EMD-70642
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L-cluster free apo-NifEN expressed in E. coli
CryoEM
Release date: Feb. 18, 2026
Resolution: 3.72 Å
EM Method: Single-particle
Fitted PDBs: 9onj
Q-score: 0.324

Neumann B, Brandon K, Suder DS, Hu Y, Ribbe MW, Gonen S

To Be Published

EMD-70643
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L-cluster inward bound holo-NifEN expressed in E. coli
CryoEM
Release date: Feb. 18, 2026
Resolution: 3.62 Å
EM Method: Single-particle
Fitted PDBs: 9onk
Q-score: 0.38

Neumann B, Brandon K, Suder DS, Hu Y, Ribbe MW, Gonen S

To Be Published

EMD-73406
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3D View
Negative stained A. vinelandii NifEN-B fusion
Negative staining
Release date: Feb. 18, 2026
Resolution: 19.0 Å
EM Method: Single-particle

Neumann B, Brandon KA, Quechol R, Suder DS, Lee CC, Yang Y, Gorecki K, Wiig JA, Hu Y, Gonen S, Ribbe MW

Nat Catal (2026) 9 pp. 281-294 [ DOI: doi:10.1038/s41929-026-01489-9 Pubmed: 41908675 ]

EMD-73407
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Negative stained A. vinelandii NifEN/NifH ADPxAIF4- stabilized complex
Negative staining
Release date: Feb. 18, 2026
Resolution: 14.8 Å
EM Method: Single-particle

Neumann B, Brandon KA, Quechol R, Suder DS, Lee CC, Yang Y, Gorecki K, Wiig JA, Hu Y, Gonen S, Ribbe MW

Nat Catal (2026) 9 pp. 281-294 [ DOI: doi:10.1038/s41929-026-01489-9 Pubmed: 41908675 ]

EMD-48914
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CryoEM structure of the Azotobacter vinelandii glutamine synthetase
CryoEM
Release date: July 30, 2025
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 9n4x
Q-score: 0.525

Shen Y, Maggiolo AO, Zhang T, Warmack RA

Structure (2025) 33 pp. 1484- [ Pubmed: 40664216 DOI: doi:10.1016/j.str.2025.06.007 ]

EMD-48906
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Azotobacter vinelandii extended type VI secretion system sheath tube complex
CryoEM
Release date: July 16, 2025
Resolution: 1.85 Å
EM Method: Helical reconstruction
Fitted PDBs: 9n4v
Q-score: 0.807

Shen Y, Maggiolo AO, Zhang T, Warmack RA

Structure (2025) 33 pp. 1484- [ Pubmed: 40664216 DOI: doi:10.1016/j.str.2025.06.007 ]

EMD-48907
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Decameric Glucose-6-phosphate isomerase from Azotobacter vinelandii
CryoEM
Release date: July 16, 2025
Resolution: 2.5 Å
EM Method: Single-particle
Fitted PDBs: 9n4w
Q-score: 0.646

Shen Y, Maggiolo AO, Zhang T, Warmack RA

Structure (2025) 33 pp. 1484- [ Pubmed: 40664216 DOI: doi:10.1016/j.str.2025.06.007 ]

EMD-48915
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CryoEM structure of a filamentous soluble pyridine nucleotide transhydrogenase
CryoEM
Release date: July 16, 2025
Resolution: 3.7 Å
EM Method: Helical reconstruction
Fitted PDBs: 9n4y

Shen Y, Maggiolo AO, Zhang T, Warmack RA

Structure (2025) 33 pp. 1484- [ Pubmed: 40664216 DOI: doi:10.1016/j.str.2025.06.007 ]

Sort by: Download
Showing 1 - 10 of 34. Page 1 of 4
Display:
Statistics
×

Download











































Preview first 10
Download

Filter By

Current Database

  • EMDB [34]

Current status

  • REL [34]

Sample type

  • Complex [34]
  • Protein [34]
  • Ligand [24]

Organism

  • Azotobacter vinelandii [34]
  • Discosoma sp. lw-2004 [1]
  • Azotobacter vinelandii [1]

EM Method

  • Single-particle [31]
  • Helical reconstruction [3]

Resolution

  • < 2Å [3]
  • ≥ 2Å and < 3Å [17]
  • ≥ 3Å and < 4Å [11]
  • ≥ 6Å and < 8Å [1]
  • ≥ 12Å and < 16Å [1]
  • ≥ 16Å and < 20Å [1]

Model molecular weight

  • 100-250 kDa [18]
  • 250-500 kDa [6]
  • 500-1000 kDa [3]
  • 1-2 MDa [1]

Release Date

  • 2026 [6]
  • 2025 [8]
  • 2024 [5]
  • 2023 [3]
  • 2022 [11]
  • 2019 [1]

Author by name

  • Cook BD [10]
  • Herzik Jr Ma [10]
  • Herzik MA [10]
  • Nguyen HPM [10]
  • Rutledge HL [10]
  • Tezcan FA [10]
  • Warmack RA [10]
  • Maggiolo AO [9]
  • Cook B [8]
  • Einsle O [7]
  • Shen Y [7]
  • Zhang L [7]
  • Zhang T [7]
  • Brandon K [4]
  • Gonen S [4]
  • Hu Y [4]
  • Neumann B [4]
  • Ribbe MW [4]
  • Suder DS [4]
  • Rees DC [3]
  • Wenke BB [3]
  • Brandon KA [2]
  • Dean DR [2]
  • Ermler U [2]
  • Gorecki K [2]
  • Howard JB [2]
  • Lee CC [2]
  • Martin Del Campo Js [2]
  • Martin Del Campo Js [2]
  • Orta A [2]
  • Quechol R [2]
  • Schneider FF [2]
  • Vonck J [2]
  • Wiig JA [2]
  • Yang Y [2]
  • Aziz I [1]
  • Bruenle S [1]
  • Brunle S [1]
  • Bueno Batista M [1]
  • Dixon R [1]
  • Eisinger ML [1]
  • Ghilarov D [1]
  • Kaltwasser S [1]
  • Kayastha K [1]
  • Khera R [1]
  • Langer JD [1]
  • Lawson DM [1]
  • Mills DJ [1]
  • Peters JW [1]
  • Poppe J [1]
  • Richardson J [1]
  • Spatzal T [1]
  • Webster MW [1]

Author by ORCID

  • Herzik Jr Ma [10]
  • Nguyen HPM [10]
  • Tezcan FA [10]
  • Cook BD [10]
  • Rutledge HL [10]
  • Zhang L [7]
  • Einsle O [7]
  • Shen Y [7]
  • Gonen S [4]
  • Suder DS [4]
  • Ribbe MW [4]
  • Hu Y [4]
  • Neumann B [4]
  • Warmack RA [3]
  • Rees DC [3]
  • Quechol R [2]
  • Vonck J [2]
  • Martin Del Campo Js [2]
  • Dean DR [2]
  • Gorecki K [2]
  • Orta A [2]
  • Maggiolo AO [2]
  • Schneider FF [2]
  • Brandon K [2]
  • Brandon KA [2]
  • Kaltwasser S [1]
  • Langer JD [1]
  • Khera R [1]
  • Dixon R [1]
  • Bueno Batista M [1]
  • Lawson DM [1]
  • Brunle S [1]
  • Mills DJ [1]

Journal

  • SCIENCE [10]
  • NAT CHEM BIOL [7]
  • STRUCTURE [7]
  • NAT CATAL [2]
  • NAT COMMUN [2]
  • TO BE PUBLISHED [2]
  • FEBS J [1]
  • J.INORG.BIOCHEM. [1]
  • NAT PROTOC [1]
  • PNAS [1]

Software

  • CRYOSPARC [18]
  • RELION [11]
  • UCSF CHIMERAX [1]

Microscope

  • TFS KRIOS [25]
  • FEI TITAN KRIOS [6]
  • JEOL 2100F [2]
  • JEOL 3200FSC [1]

Electron Source

  • FIELD EMISSION GUN [34]

Film or detector model

  • GATAN K3 6K X 4K [19]
  • GATAN K2 SUMMIT 4K X 4K [5]
  • GATAN K2 QUANTUM 4K X 4K [4]
  • TFS FALCON 4I 4K X 4K [3]
  • OTHER [2]
  • FEI FALCON IV 4K X 4K [1]

External links

  • PDB [34]
  • AlphaFold DB [30]
  • PDBe-Kb [30]
  • UniProt [30]
  • ChEBI [24]
  • InterPro [24]
  • Gene Ontology [23]
  • ChEMBL [22]
  • DrugBank [22]
  • EMPIAR [8]