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natural_source_ncbi_code:"169963"

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Current Database

  • EMDB [13]

Current status

  • REL [13]

Sample type

  • Complex [13]
  • Protein [12]
  • Ligand [8]
  • RNA [8]
  • Cellular component [1]

Organism

  • Listeria monocytogenes [13]
  • Listeria monocytogenes [5]
  • Listeria innocua [4]
  • Escherichia coli [3]
  • Enterobacteria phage t4 [2]

EM Method

  • Single-particle [13]

Resolution

  • ≥ 2Å and < 3Å [5]
  • ≥ 3Å and < 4Å [5]
  • ≥ 4Å and < 5Å [3]

Model molecular weight

  • 500-1000 kDa [1]
  • 1-2 MDa [6]
  • 2-5 MDa [4]

Release Date

  • 2026 [2]
  • 2024 [4]
  • 2022 [4]
  • 2021 [1]
  • 2019 [2]

Author by name

  • Atkinson GC [5]
  • Crowe-mcauliffe C [5]
  • Hauryliuk V [5]
  • Johansson J [5]
  • Turnbull KJ [5]
  • Vaitkevicius K [5]
  • Wilson DN [5]
  • Basu RS [4]
  • Bulvas O [4]
  • Gagnon MG [4]
  • Julius C [4]
  • Koller TO [4]
  • Kurata T [4]
  • Nakamoto JA [4]
  • Roghanian M [4]
  • Seely SM [4]
  • Williams AH [4]
  • Cossart P [2]
  • Costa TRD [2]
  • Garda V [2]
  • Lobanovska M [2]
  • Lopez-ayala I [2]
  • Martinez-bond EA [2]
  • Portnoy DA [2]
  • Qiu L [2]
  • Redzej A [2]
  • Rifflet A [2]
  • Rolhion N [2]
  • Waksman G [2]
  • Yu Z [2]
  • Zhao Z [2]
  • Ignatova Z [1]
  • Kasari M [1]
  • Mohamad M [1]
  • Murina V [1]
  • O Neill Aj [1]
  • Polte C [1]
  • Takada H [1]

Author by ORCID

  • Turnbull KJ [5]
  • Johansson J [5]
  • Atkinson GC [5]
  • Crowe-mcauliffe C [5]
  • Hauryliuk V [5]
  • Wilson DN [5]
  • Seely SM [4]
  • Julius C [4]
  • Koller TO [4]
  • Bulvas O [4]
  • Gagnon MG [4]
  • Yu Z [2]
  • Williams AH [2]
  • Zhao Z [2]
  • Rolhion N [2]
  • Lobanovska M [2]
  • Garda V [2]
  • Martinez-bond EA [2]
  • Portnoy DA [2]
  • Redzej A [2]
  • Costa TRD [2]
  • Qiu L [2]
  • Lopez-ayala I [2]
  • Mohamad M [1]
  • Ignatova Z [1]
  • Murina V [1]
  • Takada H [1]

Journal

  • NUCLEIC ACIDS RES [8]
  • NAT COMMUN [3]
  • TO BE PUBLISHED [2]

Software

  • RELION [6]
  • CRYOSPARC [4]
  • CTFFIND [1]

Microscope

  • FEI TITAN KRIOS [7]
  • TFS KRIOS [6]

Electron Source

  • FIELD EMISSION GUN [12]
  • OTHER [1]

Film or detector model

  • GATAN K2 SUMMIT 4K X 4K [6]
  • FEI FALCON III 4K X 4K [4]
  • GATAN K3 6K X 4K [2]
  • GATAN K2 QUANTUM 4K X 4K [1]

External links

  • PDB [13]
  • AlphaFold DB [11]
  • UniProt [11]
  • InterPro [9]
  • PDBe-Kb [9]
  • Pfam [9]
  • ChEBI [8]
  • ChEMBL [8]
  • DrugBank [8]
  • Gene Ontology [8]
  • EMPIAR [5]
  • SCOP2 [2]
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Showing 1 - 10 of 13. Page 1 of 2
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EMD-70081
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3D View
Phosphonull T175A of stress-activating residues
CryoEM
Release date: May 6, 2026
Resolution: 4.05 Å
EM Method: Single-particle
Fitted PDBs: 9o3o
Q-score: 0.35

Martinez-Bond EA, Lopez-Ayala I, Lobanovska M, Qiu L, Zhao Z, Garda V, Yu Z, Portnoy DA, Williams AH

To Be Published

EMD-70144
Download Map
3D View
Phosphonull T175A of stress-activating residues
CryoEM
Release date: May 6, 2026
Resolution: 4.16 Å
EM Method: Single-particle
Fitted PDBs: 9o5l
Q-score: 0.318

Martinez-Bond EA, Lopez-Ayala I, Lobanovska M, Qiu L, Zhao Z, Garda V, Yu Z, Portnoy DA, Williams AH

To Be Published

EMD-42566
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3D View
Cryo-EM structure of the Listeria innocua 70S ribosome in complex with HflXr, HPF, and E-site tRNA structure II-B
Composite map
CryoEM
Release date: Feb. 28, 2024
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 8uu7
Q-score: 0.512

Seely SM, Basu RS, Gagnon MG

Nucleic Acids Res (2024) 52 pp. 4053-4066 [ Pubmed: 38407413 DOI: doi:10.1093/nar/gkae128 ]

EMD-42571
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3D View
Cryo-EM structure of the Listeria innocua 70S ribosome head-swiveled in complex with HflXr and pe/E-tRNA structure II-C
Composite map
CryoEM
Release date: Feb. 28, 2024
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 8uu8
Q-score: 0.496

Seely SM, Basu RS, Gagnon MG

Nucleic Acids Res (2024) 52 pp. 4053-4066 [ Pubmed: 38407413 DOI: doi:10.1093/nar/gkae128 ]

EMD-42576
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3D View
Cryo-EM structure of the ratcheted Listeria innocua 70S ribosome head-swiveled in complex with HflXr and pe/E-tRNA structure II-D
Composite map
CryoEM
Release date: Feb. 28, 2024
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 8uu9
Q-score: 0.495

Seely SM, Basu RS, Gagnon MG

Nucleic Acids Res (2024) 52 pp. 4053-4066 [ Pubmed: 38407413 DOI: doi:10.1093/nar/gkae128 ]

EMD-42577
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3D View
Cryo-EM structure of the Listeria innocua 50S ribosomal subunit in complex with HflXr structure III
CryoEM
Release date: Feb. 28, 2024
Resolution: 2.7 Å
EM Method: Single-particle
Fitted PDBs: 8uua
Q-score: 0.583

Seely SM, Basu RS, Gagnon MG

Nucleic Acids Res (2024) 52 pp. 4053-4066 [ Pubmed: 38407413 DOI: doi:10.1093/nar/gkae128 ]

EMD-15161
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3D View
Raw data
EMPIAR-12112
Cryo-EM structure of HflXr bound to the Listeria monocytogenes 50S ribosomal subunit.
CryoEM
Release date: Nov. 2, 2022
Resolution: 2.3 Å
EM Method: Single-particle
Fitted PDBs: 8a57
Q-score: 0.579

Koller TO, Turnbull KJ, Vaitkevicius K, Crowe-McAuliffe C, Roghanian M, Bulvas O, Nakamoto JA, Kurata T, Julius C, Atkinson GC, Johansson J, Hauryliuk V, Wilson DN

Nucleic Acids Res (2022) 50 pp. 11285-11300 [ DOI: doi:10.1093/nar/gkac934 Pubmed: 36300626 ]

EMD-15175
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3D View
Raw data
EMPIAR-12112
Cryo-EM structure of Lincomycin bound to the Listeria monocytogenes 50S ribosomal subunit.
CryoEM
Release date: Nov. 2, 2022
Resolution: 2.3 Å
EM Method: Single-particle
Fitted PDBs: 8a5i
Q-score: 0.638

Koller TO, Turnbull KJ, Vaitkevicius K, Crowe-McAuliffe C, Roghanian M, Bulvas O, Nakamoto JA, Kurata T, Julius C, Atkinson GC, Johansson J, Hauryliuk V, Wilson DN

Nucleic Acids Res (2022) 50 pp. 11285-11300 [ DOI: doi:10.1093/nar/gkac934 Pubmed: 36300626 ]

EMD-15204
Download Map
3D View
Raw data
EMPIAR-12112
Cryo-EM structure of Listeria monocytogenes 50S ribosomal subunit.
CryoEM
Release date: Nov. 2, 2022
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 8a63
Q-score: 0.503

Koller TO, Turnbull KJ, Vaitkevicius K, Crowe-McAuliffe C, Roghanian M, Bulvas O, Nakamoto JA, Kurata T, Julius C, Atkinson GC, Johansson J, Hauryliuk V, Wilson DN

Nucleic Acids Res (2022) 50 pp. 11285-11300 [ DOI: doi:10.1093/nar/gkac934 Pubmed: 36300626 ]

EMD-15670
Download Map
3D View
Raw data
EMPIAR-12112
Cryo-EM volume of HflX bound to the Listeria monocytogenes 50S ribosomal subunit
CryoEM
Release date: Nov. 2, 2022
Resolution: 2.76 Å
EM Method: Single-particle

Koller TO, Turnbull KJ, Vaitkevicius K, Crowe-McAuliffe C, Roghanian M, Bulvas O, Nakamoto JA, Kurata T, Julius C, Atkinson GC, Johansson J, Hauryliuk V, Wilson DN

Nucleic Acids Res (2022) 50 pp. 11285-11300 [ DOI: doi:10.1093/nar/gkac934 Pubmed: 36300626 ]

Sort by: Download
Showing 1 - 10 of 13. Page 1 of 2
Display:
Statistics
×

Download











































Preview first 10
Download

Filter By

Current Database

  • EMDB [13]

Current status

  • REL [13]

Sample type

  • Complex [13]
  • Protein [12]
  • Ligand [8]
  • RNA [8]
  • Cellular component [1]

Organism

  • Listeria monocytogenes [13]
  • Listeria monocytogenes [5]
  • Listeria innocua [4]
  • Escherichia coli [3]
  • Enterobacteria phage t4 [2]

EM Method

  • Single-particle [13]

Resolution

  • ≥ 2Å and < 3Å [5]
  • ≥ 3Å and < 4Å [5]
  • ≥ 4Å and < 5Å [3]

Model molecular weight

  • 500-1000 kDa [1]
  • 1-2 MDa [6]
  • 2-5 MDa [4]

Release Date

  • 2026 [2]
  • 2024 [4]
  • 2022 [4]
  • 2021 [1]
  • 2019 [2]

Author by name

  • Atkinson GC [5]
  • Crowe-mcauliffe C [5]
  • Hauryliuk V [5]
  • Johansson J [5]
  • Turnbull KJ [5]
  • Vaitkevicius K [5]
  • Wilson DN [5]
  • Basu RS [4]
  • Bulvas O [4]
  • Gagnon MG [4]
  • Julius C [4]
  • Koller TO [4]
  • Kurata T [4]
  • Nakamoto JA [4]
  • Roghanian M [4]
  • Seely SM [4]
  • Williams AH [4]
  • Cossart P [2]
  • Costa TRD [2]
  • Garda V [2]
  • Lobanovska M [2]
  • Lopez-ayala I [2]
  • Martinez-bond EA [2]
  • Portnoy DA [2]
  • Qiu L [2]
  • Redzej A [2]
  • Rifflet A [2]
  • Rolhion N [2]
  • Waksman G [2]
  • Yu Z [2]
  • Zhao Z [2]
  • Ignatova Z [1]
  • Kasari M [1]
  • Mohamad M [1]
  • Murina V [1]
  • O Neill Aj [1]
  • Polte C [1]
  • Takada H [1]

Author by ORCID

  • Turnbull KJ [5]
  • Johansson J [5]
  • Atkinson GC [5]
  • Crowe-mcauliffe C [5]
  • Hauryliuk V [5]
  • Wilson DN [5]
  • Seely SM [4]
  • Julius C [4]
  • Koller TO [4]
  • Bulvas O [4]
  • Gagnon MG [4]
  • Yu Z [2]
  • Williams AH [2]
  • Zhao Z [2]
  • Rolhion N [2]
  • Lobanovska M [2]
  • Garda V [2]
  • Martinez-bond EA [2]
  • Portnoy DA [2]
  • Redzej A [2]
  • Costa TRD [2]
  • Qiu L [2]
  • Lopez-ayala I [2]
  • Mohamad M [1]
  • Ignatova Z [1]
  • Murina V [1]
  • Takada H [1]

Journal

  • NUCLEIC ACIDS RES [8]
  • NAT COMMUN [3]
  • TO BE PUBLISHED [2]

Software

  • RELION [6]
  • CRYOSPARC [4]
  • CTFFIND [1]

Microscope

  • FEI TITAN KRIOS [7]
  • TFS KRIOS [6]

Electron Source

  • FIELD EMISSION GUN [12]
  • OTHER [1]

Film or detector model

  • GATAN K2 SUMMIT 4K X 4K [6]
  • FEI FALCON III 4K X 4K [4]
  • GATAN K3 6K X 4K [2]
  • GATAN K2 QUANTUM 4K X 4K [1]

External links

  • PDB [13]
  • AlphaFold DB [11]
  • UniProt [11]
  • InterPro [9]
  • PDBe-Kb [9]
  • Pfam [9]
  • ChEBI [8]
  • ChEMBL [8]
  • DrugBank [8]
  • Gene Ontology [8]
  • EMPIAR [5]
  • SCOP2 [2]