Edit your search query here and hit Return to execute it:
natural_source_ncbi_code:"1422"

Filter By

Current Database

  • EMDB [122]

Current status

  • REL [122]

Sample type

  • Ligand [104]
  • RNA [98]
  • Complex [85]
  • Protein [52]
  • Cellular component [35]
  • DNA [9]
  • Sample [2]

Organism

  • Geobacillus stearothermophilus [122]
  • Mus musculus [2]
  • Thermus thermophilus [2]
  • Escherichia coli [2]
  • Escherichia coli [2]
  • Bacillus subtilis [1]
  • Geobacillus stearothermophilus [1]
  • Synthetic construct [1]

EM Method

  • Single-particle [122]

Resolution

  • ≥ 2Å and < 3Å [39]
  • ≥ 3Å and < 4Å [70]
  • ≥ 4Å and < 5Å [5]
  • ≥ 5Å and < 6Å [1]
  • ≥ 6Å and < 8Å [2]
  • ≥ 8Å and < 12Å [2]
  • ≥ 12Å and < 16Å [2]
  • ≥ 16Å and < 20Å [1]

Model molecular weight

  • 100-250 kDa [94]
  • 250-500 kDa [5]
  • 500-1000 kDa [3]
  • 1-2 MDa [1]
  • 2-5 MDa [4]

Release Date

  • 2026 [91]
  • 2024 [15]
  • 2023 [2]
  • 2022 [2]
  • 2021 [4]
  • 2020 [1]
  • 2019 [3]
  • 2017 [2]
  • 2015 [2]

Author by name

  • Stagno J [76]
  • Degenhardt MFS [70]
  • Wang YX [69]
  • Wang Y-X [36]
  • Frazao De Souza Degenhardt M [21]
  • Heddle JG [16]
  • Bhoge BA [15]
  • Biela AP [15]
  • Lee Y-T [15]
  • Skeparnias I [15]
  • Stagno JR [15]
  • Zhang J [15]
  • Chen SY [14]
  • Dyba MA [14]
  • Lee YT [14]
  • Tarasov SG [14]
  • Majsterkiewicz K [11]
  • Azuma Y [10]
  • Gawel S [8]
  • Stupka I [8]
  • Kowalczyk A [6]
  • Osinski N [6]
  • Pakosz-stepien Z [6]
  • Arias-palomo E [5]
  • Berger JM [5]
  • Imamura M [5]
  • Piette BMAG [5]
  • Scheuring S [5]
  • Benesch JLP [4]
  • Chakraborti S [4]
  • Kukura P [4]
  • Maskell D [4]
  • Maskell DP [4]
  • Pyza E [4]
  • Woznicka O [4]
  • Araujo-bazan L [3]
  • Biela A [3]
  • Fineberg A [3]
  • Hochberg GKA [3]
  • Iwasaki K [3]
  • Kaplan CS [3]
  • Kelemen M [3]
  • Kushwah MS [3]
  • Malay AD [3]
  • Miyazaki N [3]
  • Pelicon P [3]
  • Shen BW [3]
  • Spinola-amilibia M [3]
  • Stoddard BL [3]
  • Vavpetic P [3]
  • Wrobel TP [3]
  • Wu D [3]
  • De La Gandara A [3]
  • Borzecka-solarz K [2]
  • Brandi L [2]
  • Chen C-C [2]
  • Chen CC [2]
  • Chen K [2]
  • Connell SR [2]
  • Doherty EE [2]
  • Doudna JA [2]
  • Eggers AR [2]
  • Fabbretti A [2]
  • Fucini P [2]
  • Gil-carton D [2]
  • Gualerzi CO [2]
  • Guo R-T [2]
  • Guo RT [2]
  • Heiter D [2]
  • Huang JW [2]
  • Iturrioz I [2]
  • Kaminishi T [2]
  • Li X [2]
  • Liu B [2]
  • Liu BB [2]
  • Lopez-alonso JP [2]
  • Min J [2]
  • Nunez-ramirez R [2]
  • Sharma M [2]
  • Shen P [2]
  • Shen PP [2]
  • Soczek KM [2]
  • Thornton BW [2]
  • Trinidad MI [2]
  • Tuck OT [2]
  • Wang C [2]
  • Xu B [2]
  • Xu S [2]
  • Yoon PH [2]
  • Zhang L [2]
  • Zhang LL [2]
  • Barraud P [1]
  • Benesch J [1]
  • Bishop J [1]
  • Bourguet M [1]
  • Catala M [1]
  • Chen S-Y [1]
  • Cianferani S [1]
  • Condon C [1]
  • Degut C [1]

Author by ORCID

  • Stagno J [76]
  • Wang YX [69]
  • Degenhardt MFS [69]
  • Wang Y-X [21]
  • Frazao De Souza Degenhardt M [21]
  • Lee YT [14]
  • Zhang J [14]
  • Stagno JR [14]
  • Biela AP [13]
  • Heddle JG [13]
  • Majsterkiewicz K [11]
  • Azuma Y [10]
  • Stupka I [8]
  • Gawel S [8]
  • Pakosz-stepien Z [6]
  • Osinski N [6]
  • Piette BMAG [5]
  • Arias-palomo E [5]
  • Imamura M [5]
  • Kowalczyk A [5]
  • Scheuring S [5]
  • Chakraborti S [4]
  • Woznicka O [4]
  • Maskell DP [4]
  • Kushwah MS [3]
  • Vavpetic P [3]
  • Biela A [3]
  • Spinola-amilibia M [3]
  • Miyazaki N [3]
  • Fineberg A [3]
  • De La Gandara A [3]
  • Araujo-bazan L [3]
  • Shen BW [3]
  • Berger JM [3]
  • Malay AD [3]
  • Wrobel TP [3]
  • Stoddard BL [3]
  • Kaminishi T [2]
  • Xu S [2]
  • Connell SR [2]
  • Doudna JA [2]
  • Iturrioz I [2]
  • Fucini P [2]
  • Lopez-alonso JP [2]
  • Fabbretti A [2]
  • Gil-carton D [2]
  • Tisne C [1]
  • Oerum S [1]
  • Piette B [1]
  • Benesch JLP [1]
  • Condon C [1]
  • Catala M [1]
  • Bourguet M [1]
  • Roos WH [1]
  • Naskalska A [1]
  • Dendooven T [1]
  • Kukura P [1]
  • Luisi BF [1]
  • Trinquier A [1]
  • Maity S [1]
  • Cianferani S [1]
  • Barraud P [1]

Journal

  • TO BE PUBLISHED [80]
  • NAT COMMUN [15]
  • MACROMOL RAPID COMMUN [6]
  • NATURE [5]
  • CELL [4]
  • SCI ADV [4]
  • ACS CATAL [2]
  • NUCLEIC ACIDS RES [2]
  • ACS NANOSCI AU [1]
  • J MATER CHEM B [1]
  • MOL CELL [1]
  • NANO LETTERS [1]

Software

  • CRYOSPARC [109]
  • UCSF CHIMERAX [12]
  • RELION [7]
  • CTFFIND [2]
  • EMAN2, SPARX [2]

Microscope

  • TFS KRIOS [77]
  • FEI TITAN KRIOS [25]
  • FEI TALOS ARCTICA [18]
  • FEI TECNAI F20 [2]
  • JEOL 2200FSC [2]

Electron Source

  • FIELD EMISSION GUN [122]

Film or detector model

  • FEI FALCON IV 4K X 4K [76]
  • GATAN K3 BIOQUANTUM 6K X 4K [18]
  • GATAN K3 6K X 4K [12]
  • FEI FALCON III 4K X 4K [6]
  • GATAN ULTRASCAN 4000 4K X 4K [4]
  • FEI FALCON II 4K X 4K [3]
  • DIRECT ELECTRON DE-10 5K X 4K [2]
  • DIRECT ELECTRON DE-20 5K X 3K [2]
  • GATAN K2 SUMMIT 4K X 4K [1]

External links

  • PDB [121]
  • ChEBI [102]
  • DrugBank [102]
  • AlphaFold DB [48]
  • UniProt [48]
  • ChEMBL [38]
  • PDBe-Kb [27]
  • Gene Ontology [17]
  • InterPro [17]
  • Pfam [3]
  • Complex Portal [2]
Sort by: Download
Showing 1 - 10 of 122. Page 1 of 13
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EMD-70934
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3D View
Structure of Geobacillus stearothermophilus RNase P ribozyme in complex with precursor tRNA in 10 mM Ca2
CryoEM
Release date: June 3, 2026
Resolution: 2.98 Å
EM Method: Single-particle
Fitted PDBs: 9owk

Lee Y-T, Degenhardt MFS, Skeparnias I, Chen S-Y, Bhoge BA, Zhang J, Stagno JR, Wang Y-X

To Be Published

EMD-70888
Download Map
3D View
Structure of Geobacillus stearothermophilus RNase P ribozyme
CryoEM
Release date: May 20, 2026
Resolution: 3.19 Å
EM Method: Single-particle
Fitted PDBs: 9ov3
Q-score: 0.352

Lee YT, Degenhardt MFS, Skeparnias I, Chen SY, Bhoge BA, Tarasov SG, Dyba MA, Zhang J, Stagno JR, Wang YX

Nat Commun (2026) [ DOI: doi:10.1038/s41467-026-71597-4 Pubmed: 41986363 ]

EMD-70891
Download Map
3D View
Structure of Geobacillus stearothermophilus RNase P ribozyme sub-conformation 1
CryoEM
Release date: May 20, 2026
Resolution: 3.46 Å
EM Method: Single-particle
Fitted PDBs: 9ov6
Q-score: 0.33

Lee YT, Degenhardt MFS, Skeparnias I, Chen SY, Bhoge BA, Tarasov SG, Dyba MA, Zhang J, Stagno JR, Wang YX

Nat Commun (2026) [ DOI: doi:10.1038/s41467-026-71597-4 Pubmed: 41986363 ]

EMD-70892
Download Map
3D View
Structure of Geobacillus stearothermophilus RNase P ribozyme sub-conformation 2
CryoEM
Release date: May 20, 2026
Resolution: 3.27 Å
EM Method: Single-particle
Fitted PDBs: 9ov7
Q-score: 0.332

Lee YT, Degenhardt MFS, Skeparnias I, Chen SY, Bhoge BA, Tarasov SG, Dyba MA, Zhang J, Stagno JR, Wang YX

Nat Commun (2026) [ DOI: doi:10.1038/s41467-026-71597-4 Pubmed: 41986363 ]

EMD-70893
Download Map
3D View
Structure of Geobacillus stearothermophilus RNase P ribozyme sub-conformation 3
CryoEM
Release date: May 20, 2026
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 9ov8
Q-score: 0.324

Lee YT, Degenhardt MFS, Skeparnias I, Chen SY, Bhoge BA, Tarasov SG, Dyba MA, Zhang J, Stagno JR, Wang YX

Nat Commun (2026) [ DOI: doi:10.1038/s41467-026-71597-4 Pubmed: 41986363 ]

EMD-70896
Download Map
3D View
Structure of Geobacillus stearothermophilus RNase P ribozyme in 5 mM Mg2
CryoEM
Release date: May 20, 2026
Resolution: 3.21 Å
EM Method: Single-particle
Fitted PDBs: 9ovb
Q-score: 0.365

Lee YT, Degenhardt MFS, Skeparnias I, Chen SY, Bhoge BA, Tarasov SG, Dyba MA, Zhang J, Stagno JR, Wang YX

Nat Commun (2026) [ DOI: doi:10.1038/s41467-026-71597-4 Pubmed: 41986363 ]

EMD-70897
Download Map
3D View
Structure of Geobacillus stearothermophilus RNase P ribozyme in 10 mM Mg2
CryoEM
Release date: May 20, 2026
Resolution: 2.97 Å
EM Method: Single-particle
Fitted PDBs: 9ovc
Q-score: 0.403

Lee YT, Degenhardt MFS, Skeparnias I, Chen SY, Bhoge BA, Tarasov SG, Dyba MA, Zhang J, Stagno JR, Wang YX

Nat Commun (2026) [ DOI: doi:10.1038/s41467-026-71597-4 Pubmed: 41986363 ]

EMD-70933
Download Map
3D View
Structure of Geobacillus stearothermophilus RNase P ribozyme in complex with precursor tRNA in 5 mM Ca2
CryoEM
Release date: May 20, 2026
Resolution: 2.94 Å
EM Method: Single-particle
Fitted PDBs: 9owj
Q-score: 0.417

Lee YT, Degenhardt MFS, Skeparnias I, Chen SY, Bhoge BA, Tarasov SG, Dyba MA, Zhang J, Stagno JR, Wang YX

Nat Commun (2026) [ DOI: doi:10.1038/s41467-026-71597-4 Pubmed: 41986363 ]

EMD-70935
Download Map
3D View
Structure of Geobacillus stearothermophilus RNase P ribozyme in complex with mature tRNA in 5 mM Ca2
CryoEM
Release date: May 20, 2026
Resolution: 2.99 Å
EM Method: Single-particle
Fitted PDBs: 9owl
Q-score: 0.414

Lee YT, Degenhardt MFS, Skeparnias I, Chen SY, Bhoge BA, Tarasov SG, Dyba MA, Zhang J, Stagno JR, Wang YX

Nat Commun (2026) [ DOI: doi:10.1038/s41467-026-71597-4 Pubmed: 41986363 ]

EMD-70936
Download Map
3D View
Structure of Geobacillus stearothermophilus RNase P ribozyme in complex with mature tRNA in 10 mM Ca2
CryoEM
Release date: May 20, 2026
Resolution: 2.95 Å
EM Method: Single-particle
Fitted PDBs: 9owm
Q-score: 0.427

Lee YT, Degenhardt MFS, Skeparnias I, Chen SY, Bhoge BA, Tarasov SG, Dyba MA, Zhang J, Stagno JR, Wang YX

Nat Commun (2026) [ DOI: doi:10.1038/s41467-026-71597-4 Pubmed: 41986363 ]

Sort by: Download
Showing 1 - 10 of 122. Page 1 of 13
Display:
Statistics
×

Download











































Preview first 10
Download

Filter By

Current Database

  • EMDB [122]

Current status

  • REL [122]

Sample type

  • Ligand [104]
  • RNA [98]
  • Complex [85]
  • Protein [52]
  • Cellular component [35]
  • DNA [9]
  • Sample [2]

Organism

  • Geobacillus stearothermophilus [122]
  • Mus musculus [2]
  • Thermus thermophilus [2]
  • Escherichia coli [2]
  • Escherichia coli [2]
  • Bacillus subtilis [1]
  • Geobacillus stearothermophilus [1]
  • Synthetic construct [1]

EM Method

  • Single-particle [122]

Resolution

  • ≥ 2Å and < 3Å [39]
  • ≥ 3Å and < 4Å [70]
  • ≥ 4Å and < 5Å [5]
  • ≥ 5Å and < 6Å [1]
  • ≥ 6Å and < 8Å [2]
  • ≥ 8Å and < 12Å [2]
  • ≥ 12Å and < 16Å [2]
  • ≥ 16Å and < 20Å [1]

Model molecular weight

  • 100-250 kDa [94]
  • 250-500 kDa [5]
  • 500-1000 kDa [3]
  • 1-2 MDa [1]
  • 2-5 MDa [4]

Release Date

  • 2026 [91]
  • 2024 [15]
  • 2023 [2]
  • 2022 [2]
  • 2021 [4]
  • 2020 [1]
  • 2019 [3]
  • 2017 [2]
  • 2015 [2]

Author by name

  • Stagno J [76]
  • Degenhardt MFS [70]
  • Wang YX [69]
  • Wang Y-X [36]
  • Frazao De Souza Degenhardt M [21]
  • Heddle JG [16]
  • Bhoge BA [15]
  • Biela AP [15]
  • Lee Y-T [15]
  • Skeparnias I [15]
  • Stagno JR [15]
  • Zhang J [15]
  • Chen SY [14]
  • Dyba MA [14]
  • Lee YT [14]
  • Tarasov SG [14]
  • Majsterkiewicz K [11]
  • Azuma Y [10]
  • Gawel S [8]
  • Stupka I [8]
  • Kowalczyk A [6]
  • Osinski N [6]
  • Pakosz-stepien Z [6]
  • Arias-palomo E [5]
  • Berger JM [5]
  • Imamura M [5]
  • Piette BMAG [5]
  • Scheuring S [5]
  • Benesch JLP [4]
  • Chakraborti S [4]
  • Kukura P [4]
  • Maskell D [4]
  • Maskell DP [4]
  • Pyza E [4]
  • Woznicka O [4]
  • Araujo-bazan L [3]
  • Biela A [3]
  • Fineberg A [3]
  • Hochberg GKA [3]
  • Iwasaki K [3]
  • Kaplan CS [3]
  • Kelemen M [3]
  • Kushwah MS [3]
  • Malay AD [3]
  • Miyazaki N [3]
  • Pelicon P [3]
  • Shen BW [3]
  • Spinola-amilibia M [3]
  • Stoddard BL [3]
  • Vavpetic P [3]
  • Wrobel TP [3]
  • Wu D [3]
  • De La Gandara A [3]
  • Borzecka-solarz K [2]
  • Brandi L [2]
  • Chen C-C [2]
  • Chen CC [2]
  • Chen K [2]
  • Connell SR [2]
  • Doherty EE [2]
  • Doudna JA [2]
  • Eggers AR [2]
  • Fabbretti A [2]
  • Fucini P [2]
  • Gil-carton D [2]
  • Gualerzi CO [2]
  • Guo R-T [2]
  • Guo RT [2]
  • Heiter D [2]
  • Huang JW [2]
  • Iturrioz I [2]
  • Kaminishi T [2]
  • Li X [2]
  • Liu B [2]
  • Liu BB [2]
  • Lopez-alonso JP [2]
  • Min J [2]
  • Nunez-ramirez R [2]
  • Sharma M [2]
  • Shen P [2]
  • Shen PP [2]
  • Soczek KM [2]
  • Thornton BW [2]
  • Trinidad MI [2]
  • Tuck OT [2]
  • Wang C [2]
  • Xu B [2]
  • Xu S [2]
  • Yoon PH [2]
  • Zhang L [2]
  • Zhang LL [2]
  • Barraud P [1]
  • Benesch J [1]
  • Bishop J [1]
  • Bourguet M [1]
  • Catala M [1]
  • Chen S-Y [1]
  • Cianferani S [1]
  • Condon C [1]
  • Degut C [1]

Author by ORCID

  • Stagno J [76]
  • Wang YX [69]
  • Degenhardt MFS [69]
  • Wang Y-X [21]
  • Frazao De Souza Degenhardt M [21]
  • Lee YT [14]
  • Zhang J [14]
  • Stagno JR [14]
  • Biela AP [13]
  • Heddle JG [13]
  • Majsterkiewicz K [11]
  • Azuma Y [10]
  • Stupka I [8]
  • Gawel S [8]
  • Pakosz-stepien Z [6]
  • Osinski N [6]
  • Piette BMAG [5]
  • Arias-palomo E [5]
  • Imamura M [5]
  • Kowalczyk A [5]
  • Scheuring S [5]
  • Chakraborti S [4]
  • Woznicka O [4]
  • Maskell DP [4]
  • Kushwah MS [3]
  • Vavpetic P [3]
  • Biela A [3]
  • Spinola-amilibia M [3]
  • Miyazaki N [3]
  • Fineberg A [3]
  • De La Gandara A [3]
  • Araujo-bazan L [3]
  • Shen BW [3]
  • Berger JM [3]
  • Malay AD [3]
  • Wrobel TP [3]
  • Stoddard BL [3]
  • Kaminishi T [2]
  • Xu S [2]
  • Connell SR [2]
  • Doudna JA [2]
  • Iturrioz I [2]
  • Fucini P [2]
  • Lopez-alonso JP [2]
  • Fabbretti A [2]
  • Gil-carton D [2]
  • Tisne C [1]
  • Oerum S [1]
  • Piette B [1]
  • Benesch JLP [1]
  • Condon C [1]
  • Catala M [1]
  • Bourguet M [1]
  • Roos WH [1]
  • Naskalska A [1]
  • Dendooven T [1]
  • Kukura P [1]
  • Luisi BF [1]
  • Trinquier A [1]
  • Maity S [1]
  • Cianferani S [1]
  • Barraud P [1]

Journal

  • TO BE PUBLISHED [80]
  • NAT COMMUN [15]
  • MACROMOL RAPID COMMUN [6]
  • NATURE [5]
  • CELL [4]
  • SCI ADV [4]
  • ACS CATAL [2]
  • NUCLEIC ACIDS RES [2]
  • ACS NANOSCI AU [1]
  • J MATER CHEM B [1]
  • MOL CELL [1]
  • NANO LETTERS [1]

Software

  • CRYOSPARC [109]
  • UCSF CHIMERAX [12]
  • RELION [7]
  • CTFFIND [2]
  • EMAN2, SPARX [2]

Microscope

  • TFS KRIOS [77]
  • FEI TITAN KRIOS [25]
  • FEI TALOS ARCTICA [18]
  • FEI TECNAI F20 [2]
  • JEOL 2200FSC [2]

Electron Source

  • FIELD EMISSION GUN [122]

Film or detector model

  • FEI FALCON IV 4K X 4K [76]
  • GATAN K3 BIOQUANTUM 6K X 4K [18]
  • GATAN K3 6K X 4K [12]
  • FEI FALCON III 4K X 4K [6]
  • GATAN ULTRASCAN 4000 4K X 4K [4]
  • FEI FALCON II 4K X 4K [3]
  • DIRECT ELECTRON DE-10 5K X 4K [2]
  • DIRECT ELECTRON DE-20 5K X 3K [2]
  • GATAN K2 SUMMIT 4K X 4K [1]

External links

  • PDB [121]
  • ChEBI [102]
  • DrugBank [102]
  • AlphaFold DB [48]
  • UniProt [48]
  • ChEMBL [38]
  • PDBe-Kb [27]
  • Gene Ontology [17]
  • InterPro [17]
  • Pfam [3]
  • Complex Portal [2]