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natural_source_ncbi_code:"1410628"

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Current Database

  • EMDB [19]

Current status

  • REL [19]

Sample type

  • Complex [19]
  • Protein [19]
  • RNA [16]
  • Ligand [12]
  • DNA [6]
  • Other [1]

Organism

  • Lachnospiraceae bacterium nd2006 [19]
  • Moraxella bovoculi [7]
  • Bacterium [2]
  • Synthetic construct [2]
  • Thermanaerosceptrum fracticalcis [1]
  • Dna molecule [1]
  • Escherichia coli [1]
  • Vibrio cholerae [1]

EM Method

  • Single-particle [19]

Resolution

  • ≥ 2Å and < 3Å [6]
  • ≥ 3Å and < 4Å [9]
  • ≥ 4Å and < 5Å [2]
  • ≥ 5Å and < 6Å [1]
  • ≥ 6Å and < 8Å [1]

Release Date

  • 2026 [3]
  • 2025 [2]
  • 2020 [6]
  • 2019 [8]

Author by name

  • Chang L [12]
  • Li Z [12]
  • Zhang H [12]
  • Daczkowski CM [6]
  • Gabel C [6]
  • Mesecar AD [6]
  • Xiao R [6]
  • Alfonse L [3]
  • Ditommaso T [3]
  • Garrity AJ [3]
  • Kobayashi TA [3]
  • Koonin EV [3]
  • Maben Z [3]
  • Makarova KS [3]
  • Morinaga H [3]
  • Munoz G [3]
  • Nureki O [3]
  • Omura SN [3]
  • Onishi K [3]
  • Ornstein A [3]
  • Shmakov SA [3]
  • Adler BA [2]
  • Al-shayeb B [2]
  • Arkin AP [2]
  • Cao F [2]
  • Cress BF [2]
  • Doudna JA [2]
  • Fellmann C [2]
  • Guo X [2]
  • Hammel M [2]
  • Hu M [2]
  • Knott GJ [2]
  • Lew RJ [2]
  • Liang F [2]
  • Liu JJ [2]
  • Lobba MJ [2]
  • Pei D [2]
  • Qi W [2]
  • Rosenberg DJ [2]
  • Shan Y [2]
  • Shen Y [2]
  • Thornton BW [2]
  • Tian T [2]
  • Wang X [2]
  • Wang Y [2]
  • Xie W [2]
  • Xu M [2]
  • Zhang B [2]
  • Zhang M [2]
  • Zhang MF [2]
  • Zhou X [2]

Journal

  • CELL HOST MICROBE [6]
  • CELL RES [3]
  • NAT STRUCT MOL BIOL [3]
  • TO BE PUBLISHED [3]
  • ACTA CRYSTALLOGR D STRUCT BIOL [2]
  • ELIFE [2]
  • NAT COMMUN [2]

Software

  • RELION [8]
  • CISTEM [3]
  • CRYOSPARC [3]

Microscope

  • FEI TITAN KRIOS [14]
  • TFS KRIOS [3]
  • FEI MORGAGNI [2]

Electron Source

  • FIELD EMISSION GUN [19]

Film or detector model

  • GATAN K2 SUMMIT 4K X 4K [12]
  • GATAN K3 6K X 4K [3]
  • GATAN K3 BIOQUANTUM 6K X 4K [3]
  • FEI FALCON IV 4K X 4K [2]

External links

  • AlphaFold DB [10]
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Showing 1 - 10 of 19. Page 1 of 2
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EMD-69297
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3D View
Cryo-EM structure of the UnCas12m4a-crRNA-tgDNA ternary complex in the TS-cleaving state
CryoEM
Release date: Sept. 2, 2026
Resolution: 2.69 Å
EM Method: Single-particle
Fitted PDBs: 23vu
Q-score: 0.623
Similar entry percentile: 91%

Morinaga H, Omura SN, Alfonse L, Ornstein A, Kobayashi TA, Onishi K, Makarova KS, Shmakov SA, Munoz G, Garrity AJ, DiTommaso T, Koonin EV, Maben Z, Nureki O

To Be Published

EMD-69298
Download Map
3D View
Cryo-EM structure of the UnCas12m4a-crRNA-tgDNA ternary complex in the NTS-cleaving state
CryoEM
Release date: Sept. 2, 2026
Resolution: 2.84 Å
EM Method: Single-particle
Fitted PDBs: 23vv
Q-score: 0.581
Similar entry percentile: 86%

Morinaga H, Omura SN, Alfonse L, Ornstein A, Kobayashi TA, Onishi K, Makarova KS, Shmakov SA, Munoz G, Garrity AJ, DiTommaso T, Koonin EV, Maben Z, Nureki O

To Be Published

EMD-69299
Download Map
3D View
Cryo-EM structure of the TfCas12m3-crRNA-tgDNA ternary complex
CryoEM
Release date: Sept. 2, 2026
Resolution: 2.39 Å
EM Method: Single-particle
Fitted PDBs: 23vw
Q-score: 0.629
Similar entry percentile: 80%

Morinaga H, Omura SN, Alfonse L, Ornstein A, Kobayashi TA, Onishi K, Makarova KS, Shmakov SA, Munoz G, Garrity AJ, DiTommaso T, Koonin EV, Maben Z, Nureki O

To Be Published

EMD-62606
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3D View
Cas12a-PCPS-dark
CryoEM
Release date: July 16, 2025
Resolution: 2.6 Å
EM Method: Single-particle
Fitted PDBs: 9kwb
Q-score: 0.508
Similar entry percentile: 35%

Hu M, Zhang B, Shan Y, Cao F, Wang Y, Qi W, Wang X, Shen Y, Guo X, Zhang M, Tian T, Xie W, Zhang M, Liang F, Pei D, Zhou X

Nat Commun (2025) 16 pp. 5939-5939 [ DOI: doi:10.1038/s41467-025-61094-5 Pubmed: 40593724 ]

EMD-62607
Download Map
3D View
Cas12a-PCPS-light
CryoEM
Release date: July 16, 2025
Resolution: 2.9 Å
EM Method: Single-particle
Fitted PDBs: 9kwc
Q-score: 0.385
Similar entry percentile: 10%

Hu M, Zhang B, Shan Y, Cao F, Wang Y, Qi W, Wang X, Shen Y, Guo X, Zhang M, Tian T, Xie W, Zhang M, Liang F, Pei D, Zhou X

Nat Commun (2025) 16 pp. 5939-5939 [ DOI: doi:10.1038/s41467-025-61094-5 Pubmed: 40593724 ]

EMD-20909
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3D View
Cryo-EM structure of VcCascade complex
CryoEM
Release date: Sept. 16, 2020
Resolution: 3.8 Å
EM Method: Single-particle

Li Z, Zhang H, Xiao R, Chang L

Cell Res (2020) 30 pp. 179-181 [ DOI: doi:10.1038/s41422-019-0268-y Pubmed: 31900425 ]

EMD-21541
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3D View
Cryo-EM structure of Cas12i E894A -crRNA-dsDNA complex
CryoEM
Release date: Sept. 16, 2020
Resolution: 2.9 Å
EM Method: Single-particle
Fitted PDBs: 6w5c
Q-score: 0.526
Similar entry percentile: 63%

Zhang H, Li Z, Xiao R, Chang L

Nat Struct Mol Biol (2020) 27 pp. 1069-1076 [ DOI: doi:10.1038/s41594-020-0499-0 Pubmed: 32895556 ]

EMD-21551
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3D View
Cryo-EM structure of Cas12i-crRNA complex
CryoEM
Release date: Sept. 16, 2020
Resolution: 3.9 Å
EM Method: Single-particle
Fitted PDBs: 6w62
Q-score: 0.349
Similar entry percentile: 35%

Zhang H, Li Z, Xiao R, Chang L

Nat Struct Mol Biol (2020) 27 pp. 1069-1076 [ DOI: doi:10.1038/s41594-020-0499-0 Pubmed: 32895556 ]

EMD-21552
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3D View
Cryo-EM structure of Cas12i-crRNA-dsDNA complex in I1 state
CryoEM
Release date: Sept. 16, 2020
Resolution: 3.9 Å
EM Method: Single-particle
Fitted PDBs: 6w64
Q-score: 0.321
Similar entry percentile: 25%

Zhang H, Li Z, Xiao R, Chang L

Nat Struct Mol Biol (2020) 27 pp. 1069-1076 [ DOI: doi:10.1038/s41594-020-0499-0 Pubmed: 32895556 ]

EMD-20908
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3D View
CryoEM structure of VcCascasde-TniQ complex
CryoEM
Release date: Jan. 29, 2020
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 6uvn
Q-score: 0.486
Similar entry percentile: 52%

Li Z, Zhang H, Xiao R, Chang L

Cell Res (2020) 30 pp. 179-181 [ DOI: doi:10.1038/s41422-019-0268-y Pubmed: 31900425 ]

Sort by: Download
Showing 1 - 10 of 19. Page 1 of 2
Display:
Statistics
×

Download


Preview 10 entries View All Download file

Filter By

Current Database

  • EMDB [19]

Current status

  • REL [19]

Sample type

  • Complex [19]
  • Protein [19]
  • RNA [16]
  • Ligand [12]
  • DNA [6]
  • Other [1]

Organism

  • Lachnospiraceae bacterium nd2006 [19]
  • Moraxella bovoculi [7]
  • Bacterium [2]
  • Synthetic construct [2]
  • Thermanaerosceptrum fracticalcis [1]
  • Dna molecule [1]
  • Escherichia coli [1]
  • Vibrio cholerae [1]

EM Method

  • Single-particle [19]

Resolution

  • ≥ 2Å and < 3Å [6]
  • ≥ 3Å and < 4Å [9]
  • ≥ 4Å and < 5Å [2]
  • ≥ 5Å and < 6Å [1]
  • ≥ 6Å and < 8Å [1]

Release Date

  • 2026 [3]
  • 2025 [2]
  • 2020 [6]
  • 2019 [8]

Author by name

  • Chang L [12]
  • Li Z [12]
  • Zhang H [12]
  • Daczkowski CM [6]
  • Gabel C [6]
  • Mesecar AD [6]
  • Xiao R [6]
  • Alfonse L [3]
  • Ditommaso T [3]
  • Garrity AJ [3]
  • Kobayashi TA [3]
  • Koonin EV [3]
  • Maben Z [3]
  • Makarova KS [3]
  • Morinaga H [3]
  • Munoz G [3]
  • Nureki O [3]
  • Omura SN [3]
  • Onishi K [3]
  • Ornstein A [3]
  • Shmakov SA [3]
  • Adler BA [2]
  • Al-shayeb B [2]
  • Arkin AP [2]
  • Cao F [2]
  • Cress BF [2]
  • Doudna JA [2]
  • Fellmann C [2]
  • Guo X [2]
  • Hammel M [2]
  • Hu M [2]
  • Knott GJ [2]
  • Lew RJ [2]
  • Liang F [2]
  • Liu JJ [2]
  • Lobba MJ [2]
  • Pei D [2]
  • Qi W [2]
  • Rosenberg DJ [2]
  • Shan Y [2]
  • Shen Y [2]
  • Thornton BW [2]
  • Tian T [2]
  • Wang X [2]
  • Wang Y [2]
  • Xie W [2]
  • Xu M [2]
  • Zhang B [2]
  • Zhang M [2]
  • Zhang MF [2]
  • Zhou X [2]

Journal

  • CELL HOST MICROBE [6]
  • CELL RES [3]
  • NAT STRUCT MOL BIOL [3]
  • TO BE PUBLISHED [3]
  • ACTA CRYSTALLOGR D STRUCT BIOL [2]
  • ELIFE [2]
  • NAT COMMUN [2]

Software

  • RELION [8]
  • CISTEM [3]
  • CRYOSPARC [3]

Microscope

  • FEI TITAN KRIOS [14]
  • TFS KRIOS [3]
  • FEI MORGAGNI [2]

Electron Source

  • FIELD EMISSION GUN [19]

Film or detector model

  • GATAN K2 SUMMIT 4K X 4K [12]
  • GATAN K3 6K X 4K [3]
  • GATAN K3 BIOQUANTUM 6K X 4K [3]
  • FEI FALCON IV 4K X 4K [2]

External links

  • AlphaFold DB [10]