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natural_source_ncbi_code:"485"

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Current Database

  • EMDB [14]

Current status

  • REL [14]

Sample type

  • Complex [13]
  • Protein [12]
  • Ligand [8]
  • Cellular component [1]
  • Sample [1]

Organism

  • Neisseria gonorrhoeae [14]
  • Neisseria gonorrhoeae [2]
  • Homo sapiens [2]
  • Methanosarcina mazei [1]
  • Synthetic construct [1]

EM Method

  • Single-particle [12]
  • Helical reconstruction [2]

Resolution

  • ≥ 2Å and < 3Å [3]
  • ≥ 3Å and < 4Å [4]
  • ≥ 4Å and < 5Å [2]
  • ≥ 5Å and < 6Å [2]
  • ≥ 6Å and < 8Å [2]
  • ≥ 12Å and < 16Å [1]

Model molecular weight

  • 100-250 kDa [5]
  • 250-500 kDa [7]
  • 500-1000 kDa [1]

Release Date

  • 2025 [3]
  • 2022 [6]
  • 2021 [1]
  • 2020 [2]
  • 2017 [1]
  • 2006 [1]

Author by name

  • Lyu M [5]
  • Noinaj N [5]
  • Shafer WM [5]
  • Su CC [5]
  • Yu EW [5]
  • Ayala JC [3]
  • Billings E [3]
  • Billings EM [3]
  • Chirakos I [3]
  • Fan Z [3]
  • Gumbart JC [3]
  • Sooreshjani MA [3]
  • Craig L [2]
  • Dhulipala V [2]
  • Egelman EH [2]
  • Holley CL [2]
  • Moseng MA [2]
  • Reimche JL [2]
  • Altindal T [1]
  • Arvai AS [1]
  • Bera A [1]
  • Bera AK [1]
  • Bocquet N [1]
  • Botte M [1]
  • Brignole EJ [1]
  • Brunner JD [1]
  • Bucher D [1]
  • Chakravarthy S [1]
  • Chami M [1]
  • Chazin WJ [1]
  • Cheng RKY [1]
  • Cornelissen CN [1]
  • Coureuil M [1]
  • Daczkowski C [1]
  • Darrow MC [1]
  • Drennan CL [1]
  • Egloff P [1]
  • Fong I [1]
  • Gesbert G [1]
  • Govindan S [1]
  • Harrison S [1]
  • Hennig M [1]
  • Levitz TS [1]
  • Mesecar A [1]
  • Nassif X [1]
  • Ni D [1]
  • Orlova A [1]
  • Osinski T [1]
  • Pique ME [1]
  • Schenck S [1]
  • Seeger MA [1]
  • Stahlberg H [1]
  • Tainer JA [1]
  • Trabuco M [1]
  • Volkmann N [1]
  • Wang F [1]
  • Wu R [1]
  • Yadav R [1]
  • Yeager M [1]
  • Zimmermann I [1]

Author by ORCID

  • Yu EW [5]
  • Shafer WM [3]
  • Billings E [3]
  • Noinaj N [2]
  • Craig L [2]
  • Moseng MA [2]
  • Schenck S [1]
  • Coureuil M [1]
  • Trabuco M [1]
  • Osinski T [1]
  • Govindan S [1]
  • Stahlberg H [1]
  • Hennig M [1]
  • Chazin WJ [1]
  • Wang F [1]
  • Tainer JA [1]
  • Seeger MA [1]
  • Nassif X [1]
  • Yadav R [1]
  • Zimmermann I [1]
  • Brunner JD [1]
  • Egelman EH [1]

Journal

  • STRUCTURE [4]
  • MICROBIOL SPECTR [3]
  • MBIO [2]
  • COMMUN BIOL [1]
  • ELIFE [1]
  • J STRUCT BIOL [1]
  • MOL CELL [1]
  • NAT COMMUN [1]

Software

  • CRYOSPARC [3]
  • COAN [1]
  • IHRSR [1]
  • RELION [1]
  • SPIDER [1]

Microscope

  • FEI TITAN KRIOS [11]
  • FEI TALOS ARCTICA [1]
  • FEI/PHILIPS CM200FEG [1]
  • TFS KRIOS [1]

Electron Source

  • FIELD EMISSION GUN [14]

Film or detector model

  • GATAN K3 6K X 4K [8]
  • GATAN K2 SUMMIT 4K X 4K [3]
  • FEI FALCON II 4K X 4K [1]
  • FEI FALCON III 4K X 4K [1]
  • KODAK SO-163 FILM [1]

External links

  • PDB [13]
  • UniProt [12]
  • AlphaFold DB [10]
  • ChEBI [8]
  • Gene Ontology [8]
  • PDBe-Kb [8]
  • Pfam [7]
  • DrugBank [4]
  • InterPro [4]
  • ChEMBL [3]
  • Complex Portal [1]
  • SCOP2 [1]
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Showing 1 - 10 of 14. Page 1 of 2
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EMD-45754
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The cryo-EM structure of BamACDE complex from Neisseria gonorrhoeae
Release date: Sept. 3, 2025
Resolution: 4.0 Å
EM Method: Single-particle
Fitted PDBs: 9cmw
Q-score: 0.387

Billings E, Fan Z, Sooreshjani MA, Gumbart JC, Noinaj N

Structure (2025) 33 pp. 1893- [ DOI: doi:10.1016/j.str.2025.08.009 Pubmed: 40902586 ]

EMD-45755
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The cryo-EM structure of BamADE subcomplex from Neisseria gonorrhoeae
Release date: Sept. 3, 2025
Resolution: 6.3 Å
EM Method: Single-particle
Fitted PDBs: 9cn0
Q-score: 0.221

Billings E, Fan Z, Sooreshjani MA, Gumbart JC, Noinaj N

Structure (2025) 33 pp. 1893- [ DOI: doi:10.1016/j.str.2025.08.009 Pubmed: 40902586 ]

EMD-45756
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3D View
The cryo-EM structure of BamAD subcomplex from Neisseria gonorrhoeae
Release date: Sept. 3, 2025
Resolution: 5.0 Å
EM Method: Single-particle
Fitted PDBs: 9cn1
Q-score: 0.226

Billings E, Fan Z, Sooreshjani MA, Gumbart JC, Noinaj N

Structure (2025) 33 pp. 1893- [ DOI: doi:10.1016/j.str.2025.08.009 Pubmed: 40902586 ]

EMD-27399
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Cryo-electron microscopy structure of Neisseria gonorrhoeae multidrug efflux pump MtrD with CASP peptide complex
Release date: Sept. 14, 2022
Resolution: 2.95 Å
EM Method: Single-particle
Fitted PDBs: 8deu
Q-score: 0.578

Lyu M, Ayala JC, Chirakos I, Su CC, Shafer WM, Yu EW

Microbiol Spectr (2022) 10 pp. e0299022-e0299022 [ Pubmed: 36121287 DOI: doi:10.1128/spectrum.02990-22 ]

EMD-27400
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Cryo-electron microscopy structure of Neisseria gonorrhoeae multidrug efflux pump MtrD with colistin complex
Release date: Sept. 14, 2022
Resolution: 3.08 Å
EM Method: Single-particle
Fitted PDBs: 8dev
Q-score: 0.551

Lyu M, Ayala JC, Chirakos I, Su CC, Shafer WM, Yu EW

Microbiol Spectr (2022) 10 pp. e0299022-e0299022 [ Pubmed: 36121287 DOI: doi:10.1128/spectrum.02990-22 ]

EMD-27401
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Cryo-electron microscopy structure of Neisseria gonorrhoeae multidrug efflux pump MtrD with LL-37 complex
Release date: Sept. 14, 2022
Resolution: 2.89 Å
EM Method: Single-particle
Fitted PDBs: 8dew
Q-score: 0.582

Lyu M, Ayala JC, Chirakos I, Su CC, Shafer WM, Yu EW

Microbiol Spectr (2022) 10 pp. e0299022-e0299022 [ Pubmed: 36121287 DOI: doi:10.1128/spectrum.02990-22 ]

EMD-12990
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Cryo-EM structure of N. gonorhoeae LptDE in complex with ProMacrobodies
Release date: May 4, 2022
Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 7omm
Q-score: 0.283

Botte M, Ni D, Schenck S, Zimmermann I, Chami M, Bocquet N, Egloff P, Bucher D, Trabuco M, Cheng RKY, Brunner JD, Seeger MA, Stahlberg H, Hennig M

Nat Commun (2022) 13 pp. 1826-1826 [ DOI: doi:10.1038/s41467-022-29459-2 Pubmed: 35383177 ]

EMD-25692
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The 6.1 angstrom cryoEM map of calprotectin bound to TdfH
Release date: Feb. 16, 2022
Resolution: 6.05 Å
EM Method: Single-particle

Bera AK, Wu R, Harrison S, Cornelissen CN, Chazin WJ, Noinaj N

Commun Biol (2022) 5 pp. 103-103 [ Pubmed: 35102276 DOI: doi:10.1038/s42003-022-03039-y ]

EMD-23773
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3D View
Structure of the Neisseria gonorrhoeae ribonucleotide reductase in the inactive state
Release date: Jan. 5, 2022
Resolution: 4.3 Å
EM Method: Single-particle
Fitted PDBs: 7mdi
Q-score: 0.389

Levitz TS, Brignole EJ, Fong I, Darrow MC, Drennan CL

J Struct Biol (2021) 214 pp. 107825-107825 [ Pubmed: 34906669 DOI: doi:10.1016/j.jsb.2021.107825 ]

EMD-24233
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The cryoEM structure of LbpB from N. gonorrhoeae in complex with lactoferrin
Release date: Dec. 1, 2021
Resolution: 3.7 Å
EM Method: Single-particle
Fitted PDBs: 7n88
Q-score: 0.415

Yadav R, Govindan S, Daczkowski C, Mesecar A, Chakravarthy S, Noinaj N

eLife (2021) 10 [ DOI: doi:10.7554/eLife.71683 Pubmed: 34751649 ]

Sort by: Download
Showing 1 - 10 of 14. Page 1 of 2
Display:
Statistics
×

Download











































Preview first 10
Download

Filter By

Current Database

  • EMDB [14]

Current status

  • REL [14]

Sample type

  • Complex [13]
  • Protein [12]
  • Ligand [8]
  • Cellular component [1]
  • Sample [1]

Organism

  • Neisseria gonorrhoeae [14]
  • Neisseria gonorrhoeae [2]
  • Homo sapiens [2]
  • Methanosarcina mazei [1]
  • Synthetic construct [1]

EM Method

  • Single-particle [12]
  • Helical reconstruction [2]

Resolution

  • ≥ 2Å and < 3Å [3]
  • ≥ 3Å and < 4Å [4]
  • ≥ 4Å and < 5Å [2]
  • ≥ 5Å and < 6Å [2]
  • ≥ 6Å and < 8Å [2]
  • ≥ 12Å and < 16Å [1]

Model molecular weight

  • 100-250 kDa [5]
  • 250-500 kDa [7]
  • 500-1000 kDa [1]

Release Date

  • 2025 [3]
  • 2022 [6]
  • 2021 [1]
  • 2020 [2]
  • 2017 [1]
  • 2006 [1]

Author by name

  • Lyu M [5]
  • Noinaj N [5]
  • Shafer WM [5]
  • Su CC [5]
  • Yu EW [5]
  • Ayala JC [3]
  • Billings E [3]
  • Billings EM [3]
  • Chirakos I [3]
  • Fan Z [3]
  • Gumbart JC [3]
  • Sooreshjani MA [3]
  • Craig L [2]
  • Dhulipala V [2]
  • Egelman EH [2]
  • Holley CL [2]
  • Moseng MA [2]
  • Reimche JL [2]
  • Altindal T [1]
  • Arvai AS [1]
  • Bera A [1]
  • Bera AK [1]
  • Bocquet N [1]
  • Botte M [1]
  • Brignole EJ [1]
  • Brunner JD [1]
  • Bucher D [1]
  • Chakravarthy S [1]
  • Chami M [1]
  • Chazin WJ [1]
  • Cheng RKY [1]
  • Cornelissen CN [1]
  • Coureuil M [1]
  • Daczkowski C [1]
  • Darrow MC [1]
  • Drennan CL [1]
  • Egloff P [1]
  • Fong I [1]
  • Gesbert G [1]
  • Govindan S [1]
  • Harrison S [1]
  • Hennig M [1]
  • Levitz TS [1]
  • Mesecar A [1]
  • Nassif X [1]
  • Ni D [1]
  • Orlova A [1]
  • Osinski T [1]
  • Pique ME [1]
  • Schenck S [1]
  • Seeger MA [1]
  • Stahlberg H [1]
  • Tainer JA [1]
  • Trabuco M [1]
  • Volkmann N [1]
  • Wang F [1]
  • Wu R [1]
  • Yadav R [1]
  • Yeager M [1]
  • Zimmermann I [1]

Author by ORCID

  • Yu EW [5]
  • Shafer WM [3]
  • Billings E [3]
  • Noinaj N [2]
  • Craig L [2]
  • Moseng MA [2]
  • Schenck S [1]
  • Coureuil M [1]
  • Trabuco M [1]
  • Osinski T [1]
  • Govindan S [1]
  • Stahlberg H [1]
  • Hennig M [1]
  • Chazin WJ [1]
  • Wang F [1]
  • Tainer JA [1]
  • Seeger MA [1]
  • Nassif X [1]
  • Yadav R [1]
  • Zimmermann I [1]
  • Brunner JD [1]
  • Egelman EH [1]

Journal

  • STRUCTURE [4]
  • MICROBIOL SPECTR [3]
  • MBIO [2]
  • COMMUN BIOL [1]
  • ELIFE [1]
  • J STRUCT BIOL [1]
  • MOL CELL [1]
  • NAT COMMUN [1]

Software

  • CRYOSPARC [3]
  • COAN [1]
  • IHRSR [1]
  • RELION [1]
  • SPIDER [1]

Microscope

  • FEI TITAN KRIOS [11]
  • FEI TALOS ARCTICA [1]
  • FEI/PHILIPS CM200FEG [1]
  • TFS KRIOS [1]

Electron Source

  • FIELD EMISSION GUN [14]

Film or detector model

  • GATAN K3 6K X 4K [8]
  • GATAN K2 SUMMIT 4K X 4K [3]
  • FEI FALCON II 4K X 4K [1]
  • FEI FALCON III 4K X 4K [1]
  • KODAK SO-163 FILM [1]

External links

  • PDB [13]
  • UniProt [12]
  • AlphaFold DB [10]
  • ChEBI [8]
  • Gene Ontology [8]
  • PDBe-Kb [8]
  • Pfam [7]
  • DrugBank [4]
  • InterPro [4]
  • ChEMBL [3]
  • Complex Portal [1]
  • SCOP2 [1]