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natural_source_ncbi_code:"243231"

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Current Database

  • EMDB [21]

Current status

  • REL [21]

Sample type

  • Complex [16]
  • Protein [16]
  • Ligand [12]
  • DNA [9]
  • RNA [6]
  • Cell [4]
  • Cellular component [1]

Organism

  • Geobacter sulfurreducens [21]
  • Pyrococcus furiosus [4]
  • Geobacter sulfurreducens [4]
  • Escherichia coli [4]
  • Escherichia coli [1]
  • Synthetic construct [1]

EM Method

  • Single-particle [14]
  • Tomography [4]
  • Helical reconstruction [3]

Resolution

  • ≥ 3Å and < 4Å [14]
  • ≥ 5Å and < 6Å [2]
  • ≥ 6Å and < 8Å [1]

Model molecular weight

  • 50-100 kDa [1]
  • 100-250 kDa [4]
  • 250-500 kDa [9]
  • 500-1000 kDa [1]

Release Date

  • 2024 [2]
  • 2023 [5]
  • 2022 [6]
  • 2021 [6]
  • 2019 [2]

Author by name

  • Hu C [11]
  • Ke A [11]
  • Nam KH [11]
  • Almendros C [6]
  • Bagde SR [6]
  • Brouns SJJ [6]
  • Costa AR [6]
  • Haagsma AC [6]
  • Hu CY [6]
  • Ke AK [6]
  • Vink JNA [6]
  • Majumdar S [5]
  • Mclean J [5]
  • Ni D [5]
  • Stahlberg H [5]
  • Terns MP [5]
  • Howley E [4]
  • Mangus A [4]
  • Torres CI [4]
  • Williams D [4]
  • Williams DR [4]
  • Wang Y [3]
  • Gu Y [2]
  • Howley EH [2]
  • Howley ET [2]
  • Huang Z [2]
  • Li J [2]
  • Long F [2]
  • Malvankar NS [2]
  • Ouyang S [2]
  • Shen C [2]
  • Srikanth V [2]
  • Xie S [2]
  • Xu X [2]
  • Yang S [2]
  • Ye L [2]
  • Zhen X [2]
  • Batista VS [1]
  • Bullitt E [1]
  • Deng Z [1]
  • Egelman EH [1]
  • Filman DJ [1]
  • Giska F [1]
  • Guberman-pfeffer MJ [1]
  • Gupta K [1]
  • Hochbaum AI [1]
  • Ing NL [1]
  • Li X [1]
  • Li XZ [1]
  • Li Z [1]
  • Liao F [1]
  • Liu X [1]
  • Londer Y [1]
  • Lovley DR [1]
  • Marino SF [1]
  • Mester Z [1]
  • O Brien Jp [1]
  • Samatey FA [1]
  • Strauss M [1]
  • Vu D [1]
  • Wang F [1]
  • Wang X [1]
  • Wang XS [1]
  • Ward JE [1]
  • Wei Y [1]
  • Wen Y [1]
  • Yalcin SE [1]
  • Yang L [1]
  • Yi SM [1]
  • Yin H [1]
  • Yu G [1]
  • Yu GM [1]
  • Zhang C [1]
  • Zhang H [1]
  • Zhang L [1]

Author by ORCID

  • Ke A [11]
  • Nam KH [11]
  • Hu C [11]
  • Costa AR [6]
  • Haagsma AC [6]
  • Bagde SR [6]
  • Brouns SJJ [6]
  • Vink JNA [6]
  • Stahlberg H [5]
  • Majumdar S [5]
  • Howley E [4]
  • Williams D [4]
  • Mangus A [4]
  • Torres CI [4]
  • Long F [2]
  • Zhen X [2]
  • Ouyang S [2]
  • Gu Y [2]
  • Li J [2]
  • Srikanth V [2]
  • Malvankar NS [1]
  • Marino SF [1]
  • Yi SM [1]
  • Samatey FA [1]
  • Strauss M [1]
  • Mester Z [1]
  • Vu D [1]
  • Gupta K [1]
  • Wang X [1]
  • Hochbaum AI [1]
  • Deng Z [1]
  • Yalcin SE [1]
  • Yang L [1]
  • Filman DJ [1]
  • Wang F [1]
  • Zhang H [1]
  • Bullitt E [1]
  • Shen C [1]

Journal

  • NATURE [6]
  • MOL CELL [5]
  • NPJ BIOFILMS MICROBIOMES [4]
  • NAT COMMUN [2]
  • CELL [1]
  • CELL RES [1]
  • COMMUN BIOL [1]
  • NAT MICROBIOL [1]

Software

  • CRYOSPARC [12]
  • RELION [12]
  • EMAN [7]
  • ETOMO [3]
  • SPIDER [1]

Microscope

  • TFS TALOS [11]
  • FEI TITAN KRIOS [10]

Electron Source

  • FIELD EMISSION GUN [21]

Film or detector model

  • GATAN K3 BIOQUANTUM 6K X 4K [11]
  • GATAN K2 SUMMIT 4K X 4K [6]
  • GATAN K3 6K X 4K [3]
  • GATAN K2 QUANTUM 4K X 4K [1]

External links

  • AlphaFold DB [16]
  • PDBe-Kb [16]
  • UniProt [16]
  • InterPro [15]
  • PDB [15]
  • Gene Ontology [14]
  • Pfam [12]
  • ChEBI [10]
  • DrugBank [10]
  • ChEMBL [2]
  • EMPIAR [2]
Sort by: Download
Showing 1 - 10 of 21. Page 1 of 3
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EMD-36384
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3D View
Cryo-EM structure of the prokaryotic SPARSA system complex
Release date: Jan. 24, 2024
Resolution: 3.6 Å
EM Method: Single-particle
Fitted PDBs: 8jkz
Q-score: 0.475

Zhen X, Xu X, Ye L, Xie S, Huang Z, Yang S, Wang Y, Li J, Long F, Ouyang S

Nat Commun (2024) 15 pp. 450-450 [ Pubmed: 38200015 DOI: doi:10.1038/s41467-023-44660-7 ]

EMD-36385
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3D View
Cryo-EM structure of the prokaryotic SPARSA system complex
Release date: Jan. 24, 2024
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 8jl0
Q-score: 0.547

Zhen X, Xu X, Ye L, Xie S, Huang Z, Yang S, Wang Y, Li J, Long F, Ouyang S

Nat Commun (2024) 15 pp. 450-450 [ Pubmed: 38200015 DOI: doi:10.1038/s41467-023-44660-7 ]

EMD-35592
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3D View
Cryo-EM structure of the target ssDNA-bound SIR2-APAZ/Ago-gRNA quaternary complex
Release date: July 5, 2023
Resolution: 3.0 Å
EM Method: Single-particle
Fitted PDBs: 8in8
Q-score: 0.504

Wang X, Li X, Yu G, Zhang L, Zhang C, Wang Y, Liao F, Wen Y, Yin H, Liu X, Wei Y, Li Z, Deng Z, Zhang H

Cell Res (2023) 33 pp. 699-711 [ Pubmed: 37311833 DOI: doi:10.1038/s41422-023-00839-7 ]

EMD-27710
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3D View
Intracytoplasmic membranes in Geobacter sulfurreducens
Release date: April 19, 2023
EM Method: Tomography

Howley E, Mangus A, Williams D, Torres CI

NPJ Biofilms Microbiomes (2023) 9 pp. 18-18 [ DOI: doi:10.1038/s41522-023-00384-6 Pubmed: 37029136 ]

EMD-27729
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Intracytoplasmic membranes in a tomogram of Geobacter sulfurreducens
Release date: April 19, 2023
EM Method: Tomography

Howley E, Mangus A, Williams D, Torres CI

NPJ Biofilms Microbiomes (2023) 9 pp. 18-18 [ DOI: doi:10.1038/s41522-023-00384-6 Pubmed: 37029136 ]

EMD-27747
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3D View
Electron cryotomogram of Geobacter sulfurreducens cell.
Release date: April 19, 2023
EM Method: Tomography

Howley E, Mangus A, Williams D, Torres CI

NPJ Biofilms Microbiomes (2023) 9 pp. 18-18 [ DOI: doi:10.1038/s41522-023-00384-6 Pubmed: 37029136 ]

EMD-27748
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3D View
Geobacter sulfurreducens whole cell tomogram with membrane invagination
Release date: April 19, 2023
EM Method: Tomography

Howley E, Mangus A, Williams D, Torres CI

NPJ Biofilms Microbiomes (2023) 9 pp. 18-18 [ DOI: doi:10.1038/s41522-023-00384-6 Pubmed: 37029136 ]

EMD-23481
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Raw data
EMPIAR-11439
Cryo-EM structure of OmcZ nanowire from Geobacter sulfurreducens
Release date: Aug. 24, 2022
Resolution: 3.4 Å
EM Method: Helical reconstruction
Fitted PDBs: 7lq5
Q-score: 0.462

Gu Y, Guberman-Pfeffer MJ, Srikanth V, Shen C, Giska F, Gupta K, Londer Y, Samatey FA, Batista VS, Malvankar NS

Nat Microbiol (2023) 8 pp. 284-298 [ DOI: doi:10.1038/s41564-022-01315-5 Pubmed: 36732469 ]

EMD-26081
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3D View
Cascade complex from type I-A CRISPR-Cas system
Release date: Aug. 10, 2022
Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 7tr6
Q-score: 0.263

Hu C, Ni D, Nam KH, Majumdar S, McLean J, Stahlberg H, Terns MP, Ke A

Mol Cell (2022) 82 pp. 2754-2768.e5 [ Pubmed: 35835111 DOI: doi:10.1016/j.molcel.2022.06.007 ]

EMD-26082
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3D View
Cascade complex from type I-A CRISPR-Cas system
Release date: Aug. 10, 2022
Resolution: 3.6 Å
EM Method: Single-particle
Fitted PDBs: 7tr8
Q-score: 0.122

Hu C, Ni D, Nam KH, Majumdar S, McLean J, Stahlberg H, Terns MP, Ke A

Mol Cell (2022) 82 pp. 2754-2768.e5 [ Pubmed: 35835111 DOI: doi:10.1016/j.molcel.2022.06.007 ]

Sort by: Download
Showing 1 - 10 of 21. Page 1 of 3
Display:
Statistics
×

Download











































Preview first 10
Download

Filter By

Current Database

  • EMDB [21]

Current status

  • REL [21]

Sample type

  • Complex [16]
  • Protein [16]
  • Ligand [12]
  • DNA [9]
  • RNA [6]
  • Cell [4]
  • Cellular component [1]

Organism

  • Geobacter sulfurreducens [21]
  • Pyrococcus furiosus [4]
  • Geobacter sulfurreducens [4]
  • Escherichia coli [4]
  • Escherichia coli [1]
  • Synthetic construct [1]

EM Method

  • Single-particle [14]
  • Tomography [4]
  • Helical reconstruction [3]

Resolution

  • ≥ 3Å and < 4Å [14]
  • ≥ 5Å and < 6Å [2]
  • ≥ 6Å and < 8Å [1]

Model molecular weight

  • 50-100 kDa [1]
  • 100-250 kDa [4]
  • 250-500 kDa [9]
  • 500-1000 kDa [1]

Release Date

  • 2024 [2]
  • 2023 [5]
  • 2022 [6]
  • 2021 [6]
  • 2019 [2]

Author by name

  • Hu C [11]
  • Ke A [11]
  • Nam KH [11]
  • Almendros C [6]
  • Bagde SR [6]
  • Brouns SJJ [6]
  • Costa AR [6]
  • Haagsma AC [6]
  • Hu CY [6]
  • Ke AK [6]
  • Vink JNA [6]
  • Majumdar S [5]
  • Mclean J [5]
  • Ni D [5]
  • Stahlberg H [5]
  • Terns MP [5]
  • Howley E [4]
  • Mangus A [4]
  • Torres CI [4]
  • Williams D [4]
  • Williams DR [4]
  • Wang Y [3]
  • Gu Y [2]
  • Howley EH [2]
  • Howley ET [2]
  • Huang Z [2]
  • Li J [2]
  • Long F [2]
  • Malvankar NS [2]
  • Ouyang S [2]
  • Shen C [2]
  • Srikanth V [2]
  • Xie S [2]
  • Xu X [2]
  • Yang S [2]
  • Ye L [2]
  • Zhen X [2]
  • Batista VS [1]
  • Bullitt E [1]
  • Deng Z [1]
  • Egelman EH [1]
  • Filman DJ [1]
  • Giska F [1]
  • Guberman-pfeffer MJ [1]
  • Gupta K [1]
  • Hochbaum AI [1]
  • Ing NL [1]
  • Li X [1]
  • Li XZ [1]
  • Li Z [1]
  • Liao F [1]
  • Liu X [1]
  • Londer Y [1]
  • Lovley DR [1]
  • Marino SF [1]
  • Mester Z [1]
  • O Brien Jp [1]
  • Samatey FA [1]
  • Strauss M [1]
  • Vu D [1]
  • Wang F [1]
  • Wang X [1]
  • Wang XS [1]
  • Ward JE [1]
  • Wei Y [1]
  • Wen Y [1]
  • Yalcin SE [1]
  • Yang L [1]
  • Yi SM [1]
  • Yin H [1]
  • Yu G [1]
  • Yu GM [1]
  • Zhang C [1]
  • Zhang H [1]
  • Zhang L [1]

Author by ORCID

  • Ke A [11]
  • Nam KH [11]
  • Hu C [11]
  • Costa AR [6]
  • Haagsma AC [6]
  • Bagde SR [6]
  • Brouns SJJ [6]
  • Vink JNA [6]
  • Stahlberg H [5]
  • Majumdar S [5]
  • Howley E [4]
  • Williams D [4]
  • Mangus A [4]
  • Torres CI [4]
  • Long F [2]
  • Zhen X [2]
  • Ouyang S [2]
  • Gu Y [2]
  • Li J [2]
  • Srikanth V [2]
  • Malvankar NS [1]
  • Marino SF [1]
  • Yi SM [1]
  • Samatey FA [1]
  • Strauss M [1]
  • Mester Z [1]
  • Vu D [1]
  • Gupta K [1]
  • Wang X [1]
  • Hochbaum AI [1]
  • Deng Z [1]
  • Yalcin SE [1]
  • Yang L [1]
  • Filman DJ [1]
  • Wang F [1]
  • Zhang H [1]
  • Bullitt E [1]
  • Shen C [1]

Journal

  • NATURE [6]
  • MOL CELL [5]
  • NPJ BIOFILMS MICROBIOMES [4]
  • NAT COMMUN [2]
  • CELL [1]
  • CELL RES [1]
  • COMMUN BIOL [1]
  • NAT MICROBIOL [1]

Software

  • CRYOSPARC [12]
  • RELION [12]
  • EMAN [7]
  • ETOMO [3]
  • SPIDER [1]

Microscope

  • TFS TALOS [11]
  • FEI TITAN KRIOS [10]

Electron Source

  • FIELD EMISSION GUN [21]

Film or detector model

  • GATAN K3 BIOQUANTUM 6K X 4K [11]
  • GATAN K2 SUMMIT 4K X 4K [6]
  • GATAN K3 6K X 4K [3]
  • GATAN K2 QUANTUM 4K X 4K [1]

External links

  • AlphaFold DB [16]
  • PDBe-Kb [16]
  • UniProt [16]
  • InterPro [15]
  • PDB [15]
  • Gene Ontology [14]
  • Pfam [12]
  • ChEBI [10]
  • DrugBank [10]
  • ChEMBL [2]
  • EMPIAR [2]