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natural_source_ncbi_code:"2334"

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Current Database

  • EMDB [113]

Current status

  • REL [113]

Sample type

  • Complex [113]
  • Protein [35]
  • Ligand [31]

Organism

  • Bacillus sp. (strain ps3) [113]
  • Pseudomonas aeruginosa [1]

EM Method

  • Single-particle [113]

Resolution

  • ≥ 2Å and < 3Å [23]
  • ≥ 3Å and < 4Å [71]
  • ≥ 4Å and < 5Å [12]
  • ≥ 5Å and < 6Å [2]
  • ≥ 6Å and < 8Å [3]
  • ≥ 8Å and < 12Å [2]

Model molecular weight

  • 100-250 kDa [1]
  • 250-500 kDa [30]
  • 500-1000 kDa [4]

Release Date

  • 2025 [23]
  • 2024 [11]
  • 2023 [44]
  • 2022 [22]
  • 2021 [6]
  • 2019 [7]

Author by name

  • Mitsuoka K [74]
  • Nakano A [74]
  • Yokoyama K [74]
  • Kishikawa J [66]
  • Kishikawa JI [66]
  • Noji H [30]
  • Ueno H [30]
  • Nakanishi A [25]
  • Adachi N [16]
  • Hamaguchi-suzuki N [16]
  • Marui R [16]
  • Murata T [16]
  • Senda T [16]
  • Sobti M [16]
  • Stewart AG [16]
  • Yasuda K [16]
  • Brown SHJ [10]
  • Kobayashi R [8]
  • Guo H [7]
  • Rubinstein JL [7]
  • Suzuki T [7]
  • Akanuma S [5]
  • Furukawa R [5]
  • Suzuki AK [5]
  • Furlong EJ [2]
  • Reininger-chatzigiannakis IP [2]
  • Zeng YC [2]
  • Yokoyoma K [1]

Author by ORCID

  • Kishikawa JI [66]
  • Yokoyama K [44]
  • Ueno H [25]
  • Nakanishi A [22]
  • Senda T [16]
  • Murata T [16]
  • Noji H [16]
  • Adachi N [16]
  • Hamaguchi-suzuki N [16]
  • Stewart AG [9]
  • Guo H [7]
  • Rubinstein JL [7]
  • Akanuma S [5]
  • Suzuki AK [5]
  • Zeng YC [2]
  • Furlong EJ [2]

Journal

  • NAT COMMUN [66]
  • PNAS NEXUS [22]
  • BIOCHIM BIOPHYS ACTA BIOENERG [10]
  • ELIFE [7]
  • PROTEIN SCI [5]
  • STRUCTURE [3]

Software

  • CRYOSPARC [80]
  • RELION [80]
  • CTFFIND [3]

Microscope

  • FEI TITAN KRIOS [88]
  • TFS KRIOS [20]
  • JEOL CRYO ARM 300 [4]
  • FEI TALOS ARCTICA [1]

Electron Source

  • FIELD EMISSION GUN [113]

Film or detector model

  • GATAN K3 BIOQUANTUM 6K X 4K [67]
  • FEI FALCON IV 4K X 4K [16]
  • GATAN K3 6K X 4K [13]
  • GATAN K2 QUANTUM 4K X 4K [9]
  • FEI FALCON III 4K X 4K [7]
  • FEI FALCON II 4K X 4K [1]

External links

  • AlphaFold DB [35]
  • PDB [35]
  • PDBe-Kb [35]
  • UniProt [35]
  • ChEBI [31]
  • Gene Ontology [31]
  • Pfam [31]
  • ChEMBL [29]
  • DrugBank [29]
  • InterPro [28]
  • EMPIAR [1]
  • SCOP2 [1]
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Showing 1 - 10 of 113. Page 1 of 12
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EMD-49839
Download Map
3D View
ATPase Hybrid F1 with the ancestral core domains Binding Dwell
Release date: Nov. 5, 2025
Resolution: 2.46 Å
EM Method: Single-particle
Fitted PDBs: 9nvl
Q-score: 0.5

Suzuki AK, Furukawa R, Sobti M, Brown SHJ, Stewart AG, Akanuma S, Ueno H, Noji H

Protein Sci (2025) 34 pp. e70345-e70345 [ DOI: doi:10.1002/pro.70345 Pubmed: 41131942 ]

EMD-49840
Download Map
3D View
ATPase Hybrid F1 with the ancestral core domains Catalytic Dwell
Release date: Nov. 5, 2025
Resolution: 2.58 Å
EM Method: Single-particle
Fitted PDBs: 9nvm
Q-score: 0.485

Suzuki AK, Furukawa R, Sobti M, Brown SHJ, Stewart AG, Akanuma S, Ueno H, Noji H

Protein Sci (2025) 34 pp. e70345-e70345 [ DOI: doi:10.1002/pro.70345 Pubmed: 41131942 ]

EMD-49841
Download Map
3D View
ATPase hybrid F1 with the ancestral core domains Hexamer without stalk Binding dwell
Release date: Nov. 5, 2025
Resolution: 2.77 Å
EM Method: Single-particle

Suzuki AK, Furukawa R, Sobti M, Brown SHJ, Stewart AG, Akanuma S, Ueno H, Noji H

Protein Sci (2025) 34 pp. e70345-e70345 [ DOI: doi:10.1002/pro.70345 Pubmed: 41131942 ]

EMD-49842
Download Map
3D View
ATPase hybrid F1 with the ancestral core domains Tetramer with stalk Binding Dwell
Release date: Nov. 5, 2025
Resolution: 2.46 Å
EM Method: Single-particle

Suzuki AK, Furukawa R, Sobti M, Brown SHJ, Stewart AG, Akanuma S, Ueno H, Noji H

Protein Sci (2025) 34 pp. e70345-e70345 [ DOI: doi:10.1002/pro.70345 Pubmed: 41131942 ]

EMD-49843
Download Map
3D View
ATPase hybrid F1 with the ancestral core domains Tetramer no stalk Binding Dwell
Release date: Nov. 5, 2025
Resolution: 2.68 Å
EM Method: Single-particle

Suzuki AK, Furukawa R, Sobti M, Brown SHJ, Stewart AG, Akanuma S, Ueno H, Noji H

Protein Sci (2025) 34 pp. e70345-e70345 [ DOI: doi:10.1002/pro.70345 Pubmed: 41131942 ]

EMD-61339
Download Map
3D View
Engineering of ATP synthase
Release date: July 9, 2025
Resolution: 2.79 Å
EM Method: Single-particle
Fitted PDBs: 9jc1
Q-score: 0.527

Ueno H, Yasuda K, Hamaguchi-Suzuki N, Marui R, Adachi N, Senda T, Murata T, Noji H

Nat Commun (2025) 16 pp. 5410-5410 [ DOI: doi:10.1038/s41467-025-61227-w Pubmed: 40610443 ]

EMD-61340
Download Map
3D View
Engineering of ATP synthase Fo
Release date: July 9, 2025
Resolution: 3.96 Å
EM Method: Single-particle
Fitted PDBs: 9jc2
Q-score: 0.281

Ueno H, Yasuda K, Hamaguchi-Suzuki N, Marui R, Adachi N, Senda T, Murata T, Noji H

Nat Commun (2025) 16 pp. 5410-5410 [ DOI: doi:10.1038/s41467-025-61227-w Pubmed: 40610443 ]

EMD-61341
Download Map
3D View
Engineering of ATP synthase single stalk1
Release date: July 9, 2025
Resolution: 2.54 Å
EM Method: Single-particle

Ueno H, Yasuda K, Hamaguchi-Suzuki N, Marui R, Adachi N, Senda T, Murata T, Noji H

Nat Commun (2025) 16 pp. 5410-5410 [ DOI: doi:10.1038/s41467-025-61227-w Pubmed: 40610443 ]

EMD-61342
Download Map
3D View
Engineering of ATP synthase single stalk2
Release date: July 9, 2025
Resolution: 2.64 Å
EM Method: Single-particle

Ueno H, Yasuda K, Hamaguchi-Suzuki N, Marui R, Adachi N, Senda T, Murata T, Noji H

Nat Commun (2025) 16 pp. 5410-5410 [ DOI: doi:10.1038/s41467-025-61227-w Pubmed: 40610443 ]

EMD-61343
Download Map
3D View
Engineering of ATP synthase single stalk3
Release date: July 9, 2025
Resolution: 2.98 Å
EM Method: Single-particle

Ueno H, Yasuda K, Hamaguchi-Suzuki N, Marui R, Adachi N, Senda T, Murata T, Noji H

Nat Commun (2025) 16 pp. 5410-5410 [ DOI: doi:10.1038/s41467-025-61227-w Pubmed: 40610443 ]

Sort by: Download
Showing 1 - 10 of 113. Page 1 of 12
Display:
Statistics
×

Download











































Preview first 10
Download

Filter By

Current Database

  • EMDB [113]

Current status

  • REL [113]

Sample type

  • Complex [113]
  • Protein [35]
  • Ligand [31]

Organism

  • Bacillus sp. (strain ps3) [113]
  • Pseudomonas aeruginosa [1]

EM Method

  • Single-particle [113]

Resolution

  • ≥ 2Å and < 3Å [23]
  • ≥ 3Å and < 4Å [71]
  • ≥ 4Å and < 5Å [12]
  • ≥ 5Å and < 6Å [2]
  • ≥ 6Å and < 8Å [3]
  • ≥ 8Å and < 12Å [2]

Model molecular weight

  • 100-250 kDa [1]
  • 250-500 kDa [30]
  • 500-1000 kDa [4]

Release Date

  • 2025 [23]
  • 2024 [11]
  • 2023 [44]
  • 2022 [22]
  • 2021 [6]
  • 2019 [7]

Author by name

  • Mitsuoka K [74]
  • Nakano A [74]
  • Yokoyama K [74]
  • Kishikawa J [66]
  • Kishikawa JI [66]
  • Noji H [30]
  • Ueno H [30]
  • Nakanishi A [25]
  • Adachi N [16]
  • Hamaguchi-suzuki N [16]
  • Marui R [16]
  • Murata T [16]
  • Senda T [16]
  • Sobti M [16]
  • Stewart AG [16]
  • Yasuda K [16]
  • Brown SHJ [10]
  • Kobayashi R [8]
  • Guo H [7]
  • Rubinstein JL [7]
  • Suzuki T [7]
  • Akanuma S [5]
  • Furukawa R [5]
  • Suzuki AK [5]
  • Furlong EJ [2]
  • Reininger-chatzigiannakis IP [2]
  • Zeng YC [2]
  • Yokoyoma K [1]

Author by ORCID

  • Kishikawa JI [66]
  • Yokoyama K [44]
  • Ueno H [25]
  • Nakanishi A [22]
  • Senda T [16]
  • Murata T [16]
  • Noji H [16]
  • Adachi N [16]
  • Hamaguchi-suzuki N [16]
  • Stewart AG [9]
  • Guo H [7]
  • Rubinstein JL [7]
  • Akanuma S [5]
  • Suzuki AK [5]
  • Zeng YC [2]
  • Furlong EJ [2]

Journal

  • NAT COMMUN [66]
  • PNAS NEXUS [22]
  • BIOCHIM BIOPHYS ACTA BIOENERG [10]
  • ELIFE [7]
  • PROTEIN SCI [5]
  • STRUCTURE [3]

Software

  • CRYOSPARC [80]
  • RELION [80]
  • CTFFIND [3]

Microscope

  • FEI TITAN KRIOS [88]
  • TFS KRIOS [20]
  • JEOL CRYO ARM 300 [4]
  • FEI TALOS ARCTICA [1]

Electron Source

  • FIELD EMISSION GUN [113]

Film or detector model

  • GATAN K3 BIOQUANTUM 6K X 4K [67]
  • FEI FALCON IV 4K X 4K [16]
  • GATAN K3 6K X 4K [13]
  • GATAN K2 QUANTUM 4K X 4K [9]
  • FEI FALCON III 4K X 4K [7]
  • FEI FALCON II 4K X 4K [1]

External links

  • AlphaFold DB [35]
  • PDB [35]
  • PDBe-Kb [35]
  • UniProt [35]
  • ChEBI [31]
  • Gene Ontology [31]
  • Pfam [31]
  • ChEMBL [29]
  • DrugBank [29]
  • InterPro [28]
  • EMPIAR [1]
  • SCOP2 [1]