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natural_source_ncbi_code:"12302"

Filter By

Current Database

  • EMDB [43]

Current status

  • REL [43]

Sample type

  • Virus [36]
  • Protein [8]
  • Complex [7]
  • RNA [7]
  • Ligand [3]
  • Sample [2]

Organism

  • Brome mosaic virus [43]
  • Phaseolus vulgaris [5]

EM Method

  • Single-particle [43]

Resolution

  • ≥ 3Å and < 4Å [9]
  • ≥ 4Å and < 5Å [25]
  • ≥ 5Å and < 6Å [3]
  • ≥ 6Å and < 8Å [4]
  • ≥ 8Å and < 12Å [2]

Model molecular weight

  • 50-100 kDa [2]
  • 100-250 kDa [5]
  • 2-5 MDa [4]

Release Date

  • 2025 [4]
  • 2022 [2]
  • 2021 [3]
  • 2020 [28]
  • 2016 [4]
  • 2014 [2]

Author by name

  • Beren C [24]
  • Chakravarty A [24]
  • Cui Y [24]
  • Cui YX [24]
  • Gelbart WM [24]
  • Knobler CM [24]
  • Rao ALN [24]
  • Yang X [24]
  • Zhou ZH [24]
  • Wang JC [8]
  • Wang JC-Y [8]
  • Dragnea B [5]
  • Kao CC [5]
  • Ni P [5]
  • Bond K [4]
  • Bond KM [4]
  • Gao Y [4]
  • Gong Q [4]
  • Hoover HS [4]
  • Jarrold MF [4]
  • Li S [4]
  • Middleton S [4]
  • Tsvetkova IB [4]
  • Vaughan RC [4]
  • Yang W [4]
  • Yao J [4]
  • Yi R [4]
  • Zhang K [4]
  • Zlotnick A [4]
  • Bonilla SL [3]
  • Kieft JS [3]
  • Macfadden A [3]
  • Sherlock ME [3]
  • Chiu W [2]
  • Figlerowicz M [2]
  • Indyka P [2]
  • Ruszkowski M [2]
  • Strugala A [2]
  • Tresset G [2]
  • Urbanowicz A [2]
  • Wang Z [2]
  • Adams PD [1]
  • Afonine PV [1]
  • Baker ML [1]
  • Bammes B [1]
  • Chen DH [1]
  • Das NC [1]
  • Hagan M [1]
  • Hryc CF [1]
  • Hryc FC [1]
  • Jakana J [1]
  • Kao C [1]
  • Liu X [1]
  • Liu XA [1]
  • Ludtke SJ [1]
  • Ma X [1]
  • Schmid MF [1]
  • Sokol P [1]

Author by ORCID

  • Chakravarty A [24]
  • Beren C [24]
  • Rao ALN [24]
  • Zhou ZH [24]
  • Cui Y [24]
  • Knobler CM [24]
  • Wang JC [8]
  • Jarrold MF [4]
  • Zlotnick A [4]
  • Gong Q [4]
  • Tsvetkova IB [4]
  • Li S [4]
  • Zhang K [4]
  • Dragnea B [4]
  • Kieft JS [3]
  • Macfadden A [3]
  • Sherlock ME [3]
  • Bonilla SL [3]
  • Ruszkowski M [2]
  • Urbanowicz A [2]
  • Indyka P [2]
  • Wang Z [2]
  • Adams PD [1]
  • Ma X [1]
  • Sokol P [1]
  • Ludtke SJ [1]
  • Hryc CF [1]
  • Chiu W [1]
  • Hagan M [1]
  • Bammes B [1]
  • Schmid MF [1]

Journal

  • PNAS [24]
  • NAT COMMUN [5]
  • J VIROL [4]
  • SMALL [4]
  • SCIENCE [3]
  • NANOSCALE [2]
  • J MOL BIOL [1]

Software

  • CTFFIND [8]
  • RELION [6]
  • AUTO3DEM [4]
  • CRYOSPARC [2]
  • MPSA, EMAN [1]
  • MPSA, EMAN1.8 [1]

Microscope

  • FEI TITAN KRIOS [32]
  • JEOL 3200FS [4]
  • TFS KRIOS [3]
  • FEI TALOS ARCTICA [2]
  • JEOL 3200FSC [2]

Electron Source

  • FIELD EMISSION GUN [43]

Film or detector model

  • GATAN K2 SUMMIT 4K X 4K [24]
  • GATAN K3 BIOQUANTUM 6K X 4K [8]
  • GATAN ULTRASCAN 4000 4K X 4K [4]
  • FEI FALCON III 4K X 4K [3]
  • FEI FALCON II 4K X 4K [2]
  • DIRECT ELECTRON DE-12 4K X 3K [1]
  • GENERIC GATAN 4K X 4K [1]

External links

  • PDB [11]
  • Gene Ontology [8]
  • InterPro [8]
  • PDBe-Kb [8]
  • Pfam [8]
  • UniProt [8]
  • AlphaFold DB [5]
  • ChEBI [3]
  • ChEMBL [3]
  • DrugBank [3]
  • EMPIAR [2]
  • SCOP2 [2]
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Showing 1 - 10 of 43. Page 1 of 5
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EMD-60247
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3D View
Cryo-EM structure of Unbound BMV TLS
Release date: March 12, 2025
Resolution: 4.6 Å
EM Method: Single-particle
Fitted PDBs: 8zmh
Q-score: 0.198

Yang W, Yi R, Yao J, Gao Y, Li S, Gong Q, Zhang K

Nat Commun (2025) 16 pp. 1276-1276 [ Pubmed: 39900568 DOI: doi:10.1038/s41467-025-56612-4 ]

EMD-60248
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Cryo-EM structure of BMV TLS-TyrRS-ATP Pre-1a state
Release date: March 12, 2025
Resolution: 3.49 Å
EM Method: Single-particle
Fitted PDBs: 8zmi
Q-score: 0.302

Yang W, Yi R, Yao J, Gao Y, Li S, Gong Q, Zhang K

Nat Commun (2025) 16 pp. 1276-1276 [ Pubmed: 39900568 DOI: doi:10.1038/s41467-025-56612-4 ]

EMD-60249
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3D View
Cryo-EM structure of BMV TLS-TyrRS-YMP post-1a state
Release date: March 12, 2025
Resolution: 3.73 Å
EM Method: Single-particle
Fitted PDBs: 8zmj
Q-score: 0.275

Yang W, Yi R, Yao J, Gao Y, Li S, Gong Q, Zhang K

Nat Commun (2025) 16 pp. 1276-1276 [ Pubmed: 39900568 DOI: doi:10.1038/s41467-025-56612-4 ]

EMD-60250
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Cryo-EM structure of BMV TLS-TyrRS Catalysis state
Release date: March 12, 2025
Resolution: 3.85 Å
EM Method: Single-particle
Fitted PDBs: 8zmk
Q-score: 0.125

Yang W, Yi R, Yao J, Gao Y, Li S, Gong Q, Zhang K

Nat Commun (2025) 16 pp. 1276-1276 [ Pubmed: 39900568 DOI: doi:10.1038/s41467-025-56612-4 ]

EMD-13344
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Cryo-EM structure of BMV-derived VLP expressed in E. coli and assembled in the presence of tRNA tVLP
Release date: March 2, 2022
Resolution: 3.0 Å
EM Method: Single-particle
Fitted PDBs: 7pe1
Q-score: 0.626

Ruszkowski M, Strugala A, Indyka P, Tresset G, Figlerowicz M, Urbanowicz A

Nanoscale (2022) 14 pp. 3224-3233 [ Pubmed: 35156989 DOI: doi:10.1039/d1nr05650f ]

EMD-13345
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Cryo-EM structure of BMV-derived VLP expressed in E. coli eVLP
Release date: March 2, 2022
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 7pe2
Q-score: 0.59

Ruszkowski M, Strugala A, Indyka P, Tresset G, Figlerowicz M, Urbanowicz A

Nanoscale (2022) 14 pp. 3224-3233 [ Pubmed: 35156989 DOI: doi:10.1039/d1nr05650f ]

EMD-24952
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Raw data
EMPIAR-10993
tRNA-like Structure from Brome Mosaic Virus
Release date: Dec. 1, 2021
Resolution: 4.3 Å
EM Method: Single-particle
Fitted PDBs: 7sam
Q-score: 0.224

Bonilla SL, Sherlock ME, MacFadden A, Kieft JS

Science (2021) 374 pp. 955-960 [ Pubmed: 34793227 DOI: doi:10.1126/science.abe8526 ]

EMD-25023
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tRNA-like Structure from Brome Mosaic Virus Bound to Tyrosyl-tRNA Synthetase from Phaseolus vulgaris. Conformation: Bound State 1.
Release date: Dec. 1, 2021
Resolution: 5.51 Å
EM Method: Single-particle
Fitted PDBs: 7sc6
Q-score: 0.151

Bonilla SL, Sherlock ME, MacFadden A, Kieft JS

Science (2021) 374 pp. 955-960 [ Pubmed: 34793227 DOI: doi:10.1126/science.abe8526 ]

EMD-25041
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tRNA-like Structure from Brome Mosaic Virus Bound to Tyrosyl-tRNA Synthetase from Phaseolus vulgaris. Conformation: Bound State 2.
Release date: Dec. 1, 2021
Resolution: 6.0 Å
EM Method: Single-particle
Fitted PDBs: 7scq
Q-score: 0.109

Bonilla SL, Sherlock ME, MacFadden A, Kieft JS

Science (2021) 374 pp. 955-960 [ Pubmed: 34793227 DOI: doi:10.1126/science.abe8526 ]

EMD-22707
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BMV VLP assembled on oligoB with D6 symmetry
Release date: Dec. 9, 2020
Resolution: 3.6 Å
EM Method: Single-particle

Bond K, Tsvetkova IB, Wang JC, Jarrold MF, Dragnea B

Small (2020) 16 pp. e2004475-e2004475 [ Pubmed: 33241653 DOI: doi:10.1002/smll.202004475 ]

Sort by: Download
Showing 1 - 10 of 43. Page 1 of 5
Display:
Statistics
×

Download











































Preview first 10
Download

Filter By

Current Database

  • EMDB [43]

Current status

  • REL [43]

Sample type

  • Virus [36]
  • Protein [8]
  • Complex [7]
  • RNA [7]
  • Ligand [3]
  • Sample [2]

Organism

  • Brome mosaic virus [43]
  • Phaseolus vulgaris [5]

EM Method

  • Single-particle [43]

Resolution

  • ≥ 3Å and < 4Å [9]
  • ≥ 4Å and < 5Å [25]
  • ≥ 5Å and < 6Å [3]
  • ≥ 6Å and < 8Å [4]
  • ≥ 8Å and < 12Å [2]

Model molecular weight

  • 50-100 kDa [2]
  • 100-250 kDa [5]
  • 2-5 MDa [4]

Release Date

  • 2025 [4]
  • 2022 [2]
  • 2021 [3]
  • 2020 [28]
  • 2016 [4]
  • 2014 [2]

Author by name

  • Beren C [24]
  • Chakravarty A [24]
  • Cui Y [24]
  • Cui YX [24]
  • Gelbart WM [24]
  • Knobler CM [24]
  • Rao ALN [24]
  • Yang X [24]
  • Zhou ZH [24]
  • Wang JC [8]
  • Wang JC-Y [8]
  • Dragnea B [5]
  • Kao CC [5]
  • Ni P [5]
  • Bond K [4]
  • Bond KM [4]
  • Gao Y [4]
  • Gong Q [4]
  • Hoover HS [4]
  • Jarrold MF [4]
  • Li S [4]
  • Middleton S [4]
  • Tsvetkova IB [4]
  • Vaughan RC [4]
  • Yang W [4]
  • Yao J [4]
  • Yi R [4]
  • Zhang K [4]
  • Zlotnick A [4]
  • Bonilla SL [3]
  • Kieft JS [3]
  • Macfadden A [3]
  • Sherlock ME [3]
  • Chiu W [2]
  • Figlerowicz M [2]
  • Indyka P [2]
  • Ruszkowski M [2]
  • Strugala A [2]
  • Tresset G [2]
  • Urbanowicz A [2]
  • Wang Z [2]
  • Adams PD [1]
  • Afonine PV [1]
  • Baker ML [1]
  • Bammes B [1]
  • Chen DH [1]
  • Das NC [1]
  • Hagan M [1]
  • Hryc CF [1]
  • Hryc FC [1]
  • Jakana J [1]
  • Kao C [1]
  • Liu X [1]
  • Liu XA [1]
  • Ludtke SJ [1]
  • Ma X [1]
  • Schmid MF [1]
  • Sokol P [1]

Author by ORCID

  • Chakravarty A [24]
  • Beren C [24]
  • Rao ALN [24]
  • Zhou ZH [24]
  • Cui Y [24]
  • Knobler CM [24]
  • Wang JC [8]
  • Jarrold MF [4]
  • Zlotnick A [4]
  • Gong Q [4]
  • Tsvetkova IB [4]
  • Li S [4]
  • Zhang K [4]
  • Dragnea B [4]
  • Kieft JS [3]
  • Macfadden A [3]
  • Sherlock ME [3]
  • Bonilla SL [3]
  • Ruszkowski M [2]
  • Urbanowicz A [2]
  • Indyka P [2]
  • Wang Z [2]
  • Adams PD [1]
  • Ma X [1]
  • Sokol P [1]
  • Ludtke SJ [1]
  • Hryc CF [1]
  • Chiu W [1]
  • Hagan M [1]
  • Bammes B [1]
  • Schmid MF [1]

Journal

  • PNAS [24]
  • NAT COMMUN [5]
  • J VIROL [4]
  • SMALL [4]
  • SCIENCE [3]
  • NANOSCALE [2]
  • J MOL BIOL [1]

Software

  • CTFFIND [8]
  • RELION [6]
  • AUTO3DEM [4]
  • CRYOSPARC [2]
  • MPSA, EMAN [1]
  • MPSA, EMAN1.8 [1]

Microscope

  • FEI TITAN KRIOS [32]
  • JEOL 3200FS [4]
  • TFS KRIOS [3]
  • FEI TALOS ARCTICA [2]
  • JEOL 3200FSC [2]

Electron Source

  • FIELD EMISSION GUN [43]

Film or detector model

  • GATAN K2 SUMMIT 4K X 4K [24]
  • GATAN K3 BIOQUANTUM 6K X 4K [8]
  • GATAN ULTRASCAN 4000 4K X 4K [4]
  • FEI FALCON III 4K X 4K [3]
  • FEI FALCON II 4K X 4K [2]
  • DIRECT ELECTRON DE-12 4K X 3K [1]
  • GENERIC GATAN 4K X 4K [1]

External links

  • PDB [11]
  • Gene Ontology [8]
  • InterPro [8]
  • PDBe-Kb [8]
  • Pfam [8]
  • UniProt [8]
  • AlphaFold DB [5]
  • ChEBI [3]
  • ChEMBL [3]
  • DrugBank [3]
  • EMPIAR [2]
  • SCOP2 [2]