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natural_source_ncbi_code:"1111708"

Filter By

Current Database

  • EMDB [32]

Current status

  • REL [32]

Sample type

  • Complex [29]
  • Protein [28]
  • Ligand [22]
  • Cellular component [3]

Organism

  • Synechocystis sp. pcc 6803 [32]
  • Synechocystis sp. pcc 6803 [11]
  • (no species) [1]

EM Method

  • Single-particle [30]
  • Helical reconstruction [2]

Resolution

  • < 2Å [3]
  • ≥ 2Å and < 3Å [14]
  • ≥ 3Å and < 4Å [10]
  • ≥ 4Å and < 5Å [3]
  • ≥ 5Å and < 6Å [1]
  • ≥ 6Å and < 8Å [1]

Model molecular weight

  • 100-250 kDa [4]
  • 250-500 kDa [4]
  • 500-1000 kDa [8]
  • 1-2 MDa [4]
  • 2-5 MDa [5]

Release Date

  • 2025 [1]
  • 2024 [5]
  • 2023 [1]
  • 2022 [10]
  • 2021 [13]
  • 2020 [2]

Author by name

  • Bina D [13]
  • Greber BJ [13]
  • Kerfeld CA [13]
  • Kirst H [13]
  • Nogales E [13]
  • Polivka T [13]
  • Sauer PV [13]
  • Sutter M [13]
  • Dominguez-martin MA [10]
  • Baumeister W [5]
  • Engel BD [5]
  • Gries K [5]
  • Gupta TK [5]
  • Heinz S [5]
  • Klumpe S [5]
  • Nickelsen J [5]
  • Niemeyer J [5]
  • Ohnishi N [5]
  • Ostermeier M [5]
  • Plitzko JM [5]
  • Rast A [5]
  • Rudack T [5]
  • Sakamoto W [5]
  • Schaffer M [5]
  • Schroda M [5]
  • Schuller JM [5]
  • Spaniol B [5]
  • Strauss M [5]
  • Wietrzynski W [5]
  • Bondanza M [3]
  • Brudvig GW [3]
  • Cupellini L [3]
  • Debus RJ [3]
  • Dominguez Martin Ma [3]
  • Gisriel CJ [3]
  • Hou WT [3]
  • Koh AF [3]
  • Kotecha A [3]
  • Mennucci B [3]
  • Wang J [3]
  • Zhou CZ [3]
  • Armstrong WH [2]
  • Batista VS [2]
  • Boehm M [2]
  • Chen Y [2]
  • Clarke M [2]
  • Doello S [2]
  • Flesher DA [2]
  • Forchhammer K [2]
  • Gunner MR [2]
  • Gutekunst K [2]
  • Heidler T [2]
  • Hellmann N [2]
  • Hennig R [2]
  • Huang HL [2]
  • Huber ST [2]
  • Jiang YL [2]
  • Junglas B [2]
  • Keskin E [2]
  • Klon A [2]
  • Li B [2]
  • Liu J [2]
  • Liu XY [2]
  • Mann D [2]
  • Reiss KM [2]
  • Sachse C [2]
  • Sauerwein J [2]
  • Schlosser L [2]
  • Schneider D [2]
  • Shvarev D [2]
  • Theune M [2]
  • Wang L [2]
  • Yang KR [2]
  • Akhtar P [1]
  • Caspy I [1]
  • Chen H [1]
  • Dobson Z [1]
  • Dong C [1]
  • Fang S [1]
  • Gao N [1]
  • Guo H [1]
  • Hao Y [1]
  • Henning R [1]
  • Huang H [1]
  • Huang X [1]
  • Jankowiak R [1]
  • Khmelnitskiy A [1]
  • Lambrev PH [1]
  • Lin S [1]
  • Liu H [1]
  • Liu LN [1]
  • Malavath T [1]
  • Mazor Y [1]
  • Nelson N [1]
  • Nowakowski PJ [1]
  • Ortiz JO [1]
  • Riddle R [1]
  • Tan HS [1]
  • Toporik H [1]
  • Wang G [1]

Author by ORCID

  • Sutter M [13]
  • Sauer PV [13]
  • Greber BJ [13]
  • Nogales E [13]
  • Polivka T [13]
  • Kirst H [13]
  • Bina D [13]
  • Kerfeld CA [13]
  • Schroda M [5]
  • Sakamoto W [5]
  • Heinz S [5]
  • Engel BD [5]
  • Strauss M [5]
  • Plitzko JM [5]
  • Klumpe S [5]
  • Schuller JM [5]
  • Bondanza M [3]
  • Koh AF [3]
  • Dominguez Martin Ma [3]
  • Mennucci B [3]
  • Kotecha A [3]
  • Brudvig GW [3]
  • Gisriel CJ [3]
  • Cupellini L [3]
  • Debus RJ [3]
  • Armstrong WH [2]
  • Junglas B [2]
  • Sachse C [2]
  • Batista VS [2]
  • Doello S [2]
  • Wang J [2]
  • Heidler T [2]
  • Zhou CZ [2]
  • Flesher DA [2]
  • Wang L [2]
  • Mann D [2]
  • Theune M [2]
  • Clarke M [2]
  • Shvarev D [2]
  • Liu J [2]
  • Forchhammer K [2]
  • Huber ST [2]
  • Boehm M [2]
  • Gutekunst K [2]
  • Schneider D [2]
  • Keskin E [2]
  • Mazor Y [1]
  • Lambrev PH [1]
  • Riddle R [1]
  • Toporik H [1]
  • Xiong Y [1]
  • Huang X [1]
  • Akhtar P [1]
  • Chen H [1]
  • Zhao J [1]
  • Liu LN [1]
  • Fang S [1]
  • Zhang P [1]
  • Weng Y [1]
  • Huang H [1]
  • Zhou K [1]
  • Caspy I [1]
  • Tan HS [1]
  • Wang J [1]
  • Gao N [1]
  • Zhang X [1]
  • Dobson Z [1]

Journal

  • NATURE [10]
  • CELL [7]
  • PNAS [5]
  • SCI ADV [3]
  • CELL DISCOV [2]
  • NAT COMMUN [2]
  • J AM CHEM SOC [1]
  • JOULE [1]
  • TO BE PUBLISHED [1]

Software

  • CRYOSPARC [15]
  • RELION [10]

Microscope

  • FEI TITAN KRIOS [15]
  • TFS KRIOS [13]
  • TFS GLACIOS [2]
  • TFS TALOS [2]

Electron Source

  • FIELD EMISSION GUN [32]

Film or detector model

  • GATAN K3 6K X 4K [15]
  • GATAN K2 SUMMIT 4K X 4K [9]
  • FEI FALCON IV 4K X 4K [5]
  • GATAN K3 BIOQUANTUM 6K X 4K [3]

External links

  • AlphaFold DB [25]
  • InterPro [25]
  • PDB [25]
  • PDBe-Kb [25]
  • Pfam [25]
  • UniProt [25]
  • Gene Ontology [23]
  • ChEBI [19]
  • ChEMBL [19]
  • DrugBank [15]
  • EMPIAR [14]
  • SCOP2 [2]
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Showing 1 - 10 of 32. Page 1 of 4
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EMD-60316
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3D View
Cryo-EM structure of bicarbonate transporter SbtA in complex with PII-like signaling protein SbtB T-loop truncation from Synechocystis sp. PCC 6803
Release date: Dec. 3, 2025
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 8zor
Q-score: 0.547

Hou WT, Zhou CZ

To Be Published

EMD-19820
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3D View
Glucose-6-phosphate dehydrogenase G6PDH in complex with protein OpcA from Synechocystis sp. PCC 6803
Release date: Dec. 18, 2024
Resolution: 3.7 Å
EM Method: Single-particle
Fitted PDBs: 9emm
Q-score: 0.466

Doello S, Shvarev D, Theune M, Sauerwein J, Klon A, Keskin E, Boehm M, Gutekunst K, Forchhammer K

PNAS (2024) 121 pp. e2411604121-e2411604121 [ Pubmed: 39642196 DOI: doi:10.1073/pnas.2411604121 ]

EMD-19821
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Glucose-6-phosphate dehydrogenase G6PDH from Synechocystis sp. PCC 6803
Release date: Dec. 18, 2024
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 9emn
Q-score: 0.519

Doello S, Shvarev D, Theune M, Sauerwein J, Klon A, Keskin E, Boehm M, Gutekunst K, Forchhammer K

PNAS (2024) 121 pp. e2411604121-e2411604121 [ Pubmed: 39642196 DOI: doi:10.1073/pnas.2411604121 ]

EMD-41434
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3D View
Raw data
EMPIAR-11644
Bottom cylinder of high-resolution phycobilisome quenched by OCP local refinement
Release date: April 17, 2024
Resolution: 2.0 Å
EM Method: Single-particle
Fitted PDBs: 8to2
Q-score: 0.592

Sauer PV, Cupellini L, Sutter M, Bondanza M, Dominguez Martin MA, Kirst H, Bina D, Koh AF, Kotecha A, Greber BJ, Nogales E, Polivka T, Mennucci B, Kerfeld CA

Sci Adv (2024) 10 pp. eadk7535-eadk7535 [ Pubmed: 38578996 DOI: doi:10.1126/sciadv.adk7535 ]

EMD-41435
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Raw data
EMPIAR-11644
Central rod disk in C1 symmetry of high-resolution phycobilisome quenched by OCP local refinement
Release date: April 17, 2024
Resolution: 1.87 Å
EM Method: Single-particle
Fitted PDBs: 8to5
Q-score: 0.833

Sauer PV, Cupellini L, Sutter M, Bondanza M, Dominguez Martin MA, Kirst H, Bina D, Koh AF, Kotecha A, Greber BJ, Nogales E, Polivka T, Mennucci B, Kerfeld CA

Sci Adv (2024) 10 pp. eadk7535-eadk7535 [ Pubmed: 38578996 DOI: doi:10.1126/sciadv.adk7535 ]

EMD-41436
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Raw data
EMPIAR-11644
Central rod disk in D3 symmetry of high-resolution phycobilisome quenched by OCP local refinement
Release date: April 17, 2024
Resolution: 1.63 Å
EM Method: Single-particle

Sauer PV, Cupellini L, Sutter M, Bondanza M, Dominguez Martin MA, Kirst H, Bina D, Koh AF, Kotecha A, Greber BJ, Nogales E, Polivka T, Mennucci B, Kerfeld CA

Sci Adv (2024) 10 pp. eadk7535-eadk7535 [ Pubmed: 38578996 DOI: doi:10.1126/sciadv.adk7535 ]

EMD-34724
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Cryo-EM structure of CpcL-PBS from cyanobacterium Synechocystis sp. PCC 6803
Release date: Nov. 8, 2023
Resolution: 2.64 Å
EM Method: Single-particle
Fitted PDBs: 8hfq
Q-score: 0.621

Zheng L, Zhang Z, Wang H, Zheng Z, Wang J, Liu H, Chen H, Dong C, Wang G, Weng Y, Gao N, Zhao J

Nat Commun (2023) 14 pp. 3961-3961 [ Pubmed: 37407580 DOI: doi:10.1038/s41467-023-39689-7 ]

EMD-25070
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Raw data
EMPIAR-11133
Synechocystis PCC 6803 Phycobilisome in the down-down conformation
Release date: Sept. 14, 2022
Resolution: 3.5 Å
EM Method: Single-particle

Dominguez-Martin MA, Sauer PV, Kirst H, Sutter M, Bina D, Greber BJ, Nogales E, Polivka T, Kerfeld CA

Nature (2022) [ Pubmed: 36045294 DOI: doi:10.1038/s41586-022-05156-4 ]

EMD-25028
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Raw data
EMPIAR-11133
Synechocystis PCC 6803 Phycobilisome core from up-down rod conformation
Release date: Aug. 31, 2022
Resolution: 2.8 Å
EM Method: Single-particle
Fitted PDBs: 7sc7
Q-score: 0.454

Dominguez-Martin MA, Sauer PV, Kirst H, Sutter M, Bina D, Greber BJ, Nogales E, Polivka T, Kerfeld CA

Nature (2022) 609 pp. 835-845 [ Pubmed: 36045294 DOI: doi:10.1038/s41586-022-05156-4 ]

EMD-25029
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3D View
Raw data
EMPIAR-11133
Synechocystis PCC 6803 Phycobilisome rod from PBS sample
Release date: Aug. 31, 2022
Resolution: 2.1 Å
EM Method: Single-particle
Fitted PDBs: 7sc8
Q-score: 0.598

Dominguez-Martin MA, Sauer PV, Kirst H, Sutter M, Bina D, Greber BJ, Nogales E, Polivka T, Kerfeld CA

Nature (2022) 609 pp. 835-845 [ Pubmed: 36045294 DOI: doi:10.1038/s41586-022-05156-4 ]

Sort by: Download
Showing 1 - 10 of 32. Page 1 of 4
Display:
Statistics
×

Download











































Preview first 10
Download

Filter By

Current Database

  • EMDB [32]

Current status

  • REL [32]

Sample type

  • Complex [29]
  • Protein [28]
  • Ligand [22]
  • Cellular component [3]

Organism

  • Synechocystis sp. pcc 6803 [32]
  • Synechocystis sp. pcc 6803 [11]
  • (no species) [1]

EM Method

  • Single-particle [30]
  • Helical reconstruction [2]

Resolution

  • < 2Å [3]
  • ≥ 2Å and < 3Å [14]
  • ≥ 3Å and < 4Å [10]
  • ≥ 4Å and < 5Å [3]
  • ≥ 5Å and < 6Å [1]
  • ≥ 6Å and < 8Å [1]

Model molecular weight

  • 100-250 kDa [4]
  • 250-500 kDa [4]
  • 500-1000 kDa [8]
  • 1-2 MDa [4]
  • 2-5 MDa [5]

Release Date

  • 2025 [1]
  • 2024 [5]
  • 2023 [1]
  • 2022 [10]
  • 2021 [13]
  • 2020 [2]

Author by name

  • Bina D [13]
  • Greber BJ [13]
  • Kerfeld CA [13]
  • Kirst H [13]
  • Nogales E [13]
  • Polivka T [13]
  • Sauer PV [13]
  • Sutter M [13]
  • Dominguez-martin MA [10]
  • Baumeister W [5]
  • Engel BD [5]
  • Gries K [5]
  • Gupta TK [5]
  • Heinz S [5]
  • Klumpe S [5]
  • Nickelsen J [5]
  • Niemeyer J [5]
  • Ohnishi N [5]
  • Ostermeier M [5]
  • Plitzko JM [5]
  • Rast A [5]
  • Rudack T [5]
  • Sakamoto W [5]
  • Schaffer M [5]
  • Schroda M [5]
  • Schuller JM [5]
  • Spaniol B [5]
  • Strauss M [5]
  • Wietrzynski W [5]
  • Bondanza M [3]
  • Brudvig GW [3]
  • Cupellini L [3]
  • Debus RJ [3]
  • Dominguez Martin Ma [3]
  • Gisriel CJ [3]
  • Hou WT [3]
  • Koh AF [3]
  • Kotecha A [3]
  • Mennucci B [3]
  • Wang J [3]
  • Zhou CZ [3]
  • Armstrong WH [2]
  • Batista VS [2]
  • Boehm M [2]
  • Chen Y [2]
  • Clarke M [2]
  • Doello S [2]
  • Flesher DA [2]
  • Forchhammer K [2]
  • Gunner MR [2]
  • Gutekunst K [2]
  • Heidler T [2]
  • Hellmann N [2]
  • Hennig R [2]
  • Huang HL [2]
  • Huber ST [2]
  • Jiang YL [2]
  • Junglas B [2]
  • Keskin E [2]
  • Klon A [2]
  • Li B [2]
  • Liu J [2]
  • Liu XY [2]
  • Mann D [2]
  • Reiss KM [2]
  • Sachse C [2]
  • Sauerwein J [2]
  • Schlosser L [2]
  • Schneider D [2]
  • Shvarev D [2]
  • Theune M [2]
  • Wang L [2]
  • Yang KR [2]
  • Akhtar P [1]
  • Caspy I [1]
  • Chen H [1]
  • Dobson Z [1]
  • Dong C [1]
  • Fang S [1]
  • Gao N [1]
  • Guo H [1]
  • Hao Y [1]
  • Henning R [1]
  • Huang H [1]
  • Huang X [1]
  • Jankowiak R [1]
  • Khmelnitskiy A [1]
  • Lambrev PH [1]
  • Lin S [1]
  • Liu H [1]
  • Liu LN [1]
  • Malavath T [1]
  • Mazor Y [1]
  • Nelson N [1]
  • Nowakowski PJ [1]
  • Ortiz JO [1]
  • Riddle R [1]
  • Tan HS [1]
  • Toporik H [1]
  • Wang G [1]

Author by ORCID

  • Sutter M [13]
  • Sauer PV [13]
  • Greber BJ [13]
  • Nogales E [13]
  • Polivka T [13]
  • Kirst H [13]
  • Bina D [13]
  • Kerfeld CA [13]
  • Schroda M [5]
  • Sakamoto W [5]
  • Heinz S [5]
  • Engel BD [5]
  • Strauss M [5]
  • Plitzko JM [5]
  • Klumpe S [5]
  • Schuller JM [5]
  • Bondanza M [3]
  • Koh AF [3]
  • Dominguez Martin Ma [3]
  • Mennucci B [3]
  • Kotecha A [3]
  • Brudvig GW [3]
  • Gisriel CJ [3]
  • Cupellini L [3]
  • Debus RJ [3]
  • Armstrong WH [2]
  • Junglas B [2]
  • Sachse C [2]
  • Batista VS [2]
  • Doello S [2]
  • Wang J [2]
  • Heidler T [2]
  • Zhou CZ [2]
  • Flesher DA [2]
  • Wang L [2]
  • Mann D [2]
  • Theune M [2]
  • Clarke M [2]
  • Shvarev D [2]
  • Liu J [2]
  • Forchhammer K [2]
  • Huber ST [2]
  • Boehm M [2]
  • Gutekunst K [2]
  • Schneider D [2]
  • Keskin E [2]
  • Mazor Y [1]
  • Lambrev PH [1]
  • Riddle R [1]
  • Toporik H [1]
  • Xiong Y [1]
  • Huang X [1]
  • Akhtar P [1]
  • Chen H [1]
  • Zhao J [1]
  • Liu LN [1]
  • Fang S [1]
  • Zhang P [1]
  • Weng Y [1]
  • Huang H [1]
  • Zhou K [1]
  • Caspy I [1]
  • Tan HS [1]
  • Wang J [1]
  • Gao N [1]
  • Zhang X [1]
  • Dobson Z [1]

Journal

  • NATURE [10]
  • CELL [7]
  • PNAS [5]
  • SCI ADV [3]
  • CELL DISCOV [2]
  • NAT COMMUN [2]
  • J AM CHEM SOC [1]
  • JOULE [1]
  • TO BE PUBLISHED [1]

Software

  • CRYOSPARC [15]
  • RELION [10]

Microscope

  • FEI TITAN KRIOS [15]
  • TFS KRIOS [13]
  • TFS GLACIOS [2]
  • TFS TALOS [2]

Electron Source

  • FIELD EMISSION GUN [32]

Film or detector model

  • GATAN K3 6K X 4K [15]
  • GATAN K2 SUMMIT 4K X 4K [9]
  • FEI FALCON IV 4K X 4K [5]
  • GATAN K3 BIOQUANTUM 6K X 4K [3]

External links

  • AlphaFold DB [25]
  • InterPro [25]
  • PDB [25]
  • PDBe-Kb [25]
  • Pfam [25]
  • UniProt [25]
  • Gene Ontology [23]
  • ChEBI [19]
  • ChEMBL [19]
  • DrugBank [15]
  • EMPIAR [14]
  • SCOP2 [2]