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natural_source_ncbi_code:"10879"

Filter By

Current Database

  • EMDB [42]

Current status

  • REL [42]

Sample type

  • Virus [27]
  • Protein [20]
  • Sample [15]
  • Complex [12]
  • RNA [12]
  • Ligand [11]

Organism

  • Pseudomonas phage phi6 [42]
  • Mus musculus [12]

EM Method

  • Single-particle [30]
  • Helical reconstruction [12]

Resolution

  • ≥ 2Å and < 3Å [1]
  • ≥ 3Å and < 4Å [6]
  • ≥ 4Å and < 5Å [11]
  • ≥ 6Å and < 8Å [4]
  • ≥ 8Å and < 12Å [11]
  • ≥ 12Å and < 16Å [4]
  • ≥ 16Å and < 20Å [5]

Model molecular weight

  • 50-100 kDa [4]
  • 100-250 kDa [10]
  • > 10 MDa [4]

Release Date

  • 2021 [4]
  • 2019 [11]
  • 2018 [9]
  • 2017 [3]
  • 2015 [3]
  • 2013 [5]
  • 2009 [4]
  • 2007 [1]
  • 2006 [2]

Author by name

  • Huiskonen JT [21]
  • Ilca SL [18]
  • Sun X [18]
  • Kotecha A [17]
  • Stuart DI [17]
  • Poranen MM [15]
  • El Omari K [14]
  • De Haas F [13]
  • Modis Y [12]
  • Yu Q [12]
  • Dimaio F [11]
  • Grimes JM [11]
  • Heymann JB [9]
  • Mindich L [9]
  • Qiao J [9]
  • Steven AC [9]
  • Qu K [8]
  • Cheng N [5]
  • Nemecek D [5]
  • Herrero Del Valle A [4]
  • Sen A [4]
  • Singh R [4]
  • Butcher SJ [3]
  • Ilca S [3]
  • Poranen MP [3]
  • Sun Z [3]
  • Bamford DH [2]
  • Bubeck D [2]
  • Fuller SD [2]
  • Boura E [1]
  • Herrero Del Valle A [1]
  • Hurley JH [1]
  • Jaalinoja HT [1]
  • Plevka P [1]
  • Wu W [1]

Author by ORCID

  • Huiskonen JT [21]
  • Ilca SL [18]
  • Kotecha A [17]
  • Poranen MM [15]
  • Sun X [15]
  • De Haas F [13]
  • Modis Y [12]
  • Grimes JM [11]
  • Heymann JB [9]
  • Stuart DI [6]
  • Herrero Del Valle A [4]
  • Singh R [4]
  • Yu Q [4]
  • Butcher SJ [3]
  • Poranen MP [3]
  • El Omari K [3]
  • Bamford DH [2]
  • Boura E [1]
  • Plevka P [1]

Journal

  • NATURE [11]
  • NAT COMMUN [10]
  • MOL CELL [8]
  • J BIOL CHEM [4]
  • J VIROL [4]
  • STRUCTURE [4]
  • NUCLEIC ACIDS RES [2]
  • MBIO [1]

Software

  • RELION [30]
  • BSOFT [4]
  • BSOFT, PFT3DR [4]
  • CHIMERA, COOT, PHENIX [2]
  • CHIMERA, PHENIX [2]
  • CTFFIND [2]
  • P3DR [2]
  • CHIMERA, MDFF, COOT [1]
  • EMAN, BSOFT [1]
  • GCTF [1]
  • PFT2, EM3DR2, POR, P3DR [1]

Microscope

  • FEI TITAN KRIOS [24]
  • FEI/PHILIPS CM200FEG [8]
  • FEI POLARA 300 [7]
  • FEI TECNAI F20 [3]

Electron Source

  • FIELD EMISSION GUN [42]

Film or detector model

  • FEI FALCON II 4K X 4K [11]
  • FEI FALCON III 4K X 4K [10]
  • KODAK SO-163 FILM [8]
  • GATAN K2 SUMMIT 4K X 4K [6]
  • GATAN K2 QUANTUM 4K X 4K [2]
  • GATAN K3 6K X 4K [1]

External links

  • PDBe-Kb [19]
  • UniProt [19]
  • PDB [18]
  • Gene Ontology [14]
  • InterPro [14]
  • Pfam [14]
  • EMPIAR [13]
  • AlphaFold DB [12]
  • ChEBI [11]
  • ChEMBL [11]
  • DrugBank [11]
  • CATH [1]
  • SCOP2 [1]
Sort by: Download
Showing 1 - 10 of 42. Page 1 of 5
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EMD-12288
Download Map
3D View
Raw data
EMPIAR-10664
CryoEM structure of disease related M854K MDA5-dsRNA filament in complex with ADP-AlF4 main class
Release date: Dec. 1, 2021
Resolution: 4.26 Å
EM Method: Helical reconstruction
Fitted PDBs: 7niq
Q-score: 0.304

Yu Q, Herrero Del Valle A, Singh R, Modis Y

Nat Commun (2021) 12 pp. 6668-6668 [ Pubmed: 34795277 DOI: doi:10.1038/s41467-021-27062-5 ]

EMD-12294
Download Map
3D View
Raw data
EMPIAR-10664
CryoEM structure of disease related M854K MDA5-dsRNA filament in complex with ADP-AlF4 minor class
Release date: Dec. 1, 2021
Resolution: 4.3 Å
EM Method: Helical reconstruction

Yu Q, Herrero Del Valle A, Singh R, Modis Y

Nat Commun (2021) 12 pp. 6668-6668 [ Pubmed: 34795277 DOI: doi:10.1038/s41467-021-27062-5 ]

EMD-11937
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3D View
Raw data
EMPIAR-10653
CryoEM structure of the MDA5-dsRNA filament in complex with ADP with 92-degree helical twist
Release date: Nov. 24, 2021
Resolution: 3.4 Å
EM Method: Helical reconstruction

Yu Q, Herrero Del Valle A, Singh R, Modis Y

Nat Commun (2021) 12 pp. 6668-6668 [ Pubmed: 34795277 DOI: doi:10.1038/s41467-021-27062-5 ]

EMD-12213
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Raw data
EMPIAR-10630
CryoEM structure of disease related M854K MDA5-dsRNA filament in complex with ATP
Release date: Nov. 17, 2021
Resolution: 2.8 Å
EM Method: Helical reconstruction
Fitted PDBs: 7bkp
Q-score: 0.584

Yu Q, Herrero Del Valle A, Singh R, Modis Y

Nat Commun (2021) 12 pp. 6668-6668 [ Pubmed: 34795277 DOI: doi:10.1038/s41467-021-27062-5 ]

EMD-10289
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3D View
Bacteriophage phi6 dsRNA genome, layer 1, conformation pseudo C2
Release date: Sept. 18, 2019
Resolution: 8.0 Å
EM Method: Single-particle

Ilca SL, Sun X, El Omari K, Kotecha A, de Haas F, DiMaio F, Grimes JM, Stuart DI, Poranen MM, Huiskonen JT

Nature (2019) 570 pp. 252-256 [ Pubmed: 31142835 DOI: doi:10.1038/s41586-019-1229-9 ]

EMD-10075
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3D View
Bacteriophage phi6 dsRNA genome, layer 1, conformation pseudo D3
Release date: June 26, 2019
Resolution: 7.2 Å
EM Method: Single-particle

Ilca SL, Sun X, El Omari K, Kotecha A, de Haas F, DiMaio F, Grimes JM, Stuart DI, Poranen MM, Huiskonen JT

Nature (2019) 570 pp. 252-256 [ Pubmed: 31142835 DOI: doi:10.1038/s41586-019-1229-9 ]

EMD-0294
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3D View
Bacteriophage phi6 dsRNA genome, layer 2
Release date: June 12, 2019
Resolution: 13.5 Å
EM Method: Single-particle

Ilca SL, Sun X, El Omari K, Kotecha A, de Haas F, DiMaio F, Grimes JM, Stuart DI, Poranen MM, Huiskonen JT

Nature (2019) 570 pp. 252-256 [ Pubmed: 31142835 DOI: doi:10.1038/s41586-019-1229-9 ]

EMD-0295
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3D View
Bacteriophage phi6 dsRNA genome, layer 3
Release date: June 12, 2019
Resolution: 16.2 Å
EM Method: Single-particle

Ilca SL, Sun X, El Omari K, Kotecha A, de Haas F, DiMaio F, Grimes JM, Stuart DI, Poranen MM, Huiskonen JT

Nature (2019) 570 pp. 252-256 [ Pubmed: 31142835 DOI: doi:10.1038/s41586-019-1229-9 ]

EMD-0296
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3D View
Bacteriophage phi6 dsRNA genome, layers 4 and 5
Release date: June 12, 2019
Resolution: 16.9 Å
EM Method: Single-particle

Ilca SL, Sun X, El Omari K, Kotecha A, de Haas F, DiMaio F, Grimes JM, Stuart DI, Poranen MM, Huiskonen JT

Nature (2019) 570 pp. 252-256 [ Pubmed: 31142835 DOI: doi:10.1038/s41586-019-1229-9 ]

EMD-0299
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Bacteriophage phi6 nucleocapsid reconstructed with icosahedral symmetry
Release date: June 12, 2019
Resolution: 3.5 Å
EM Method: Single-particle
Fitted PDBs: 6hy0
Q-score: 0.439

Ilca SL, Sun X, El Omari K, Kotecha A, de Haas F, DiMaio F, Grimes JM, Stuart DI, Poranen MM, Huiskonen JT

Nature (2019) 570 pp. 252-256 [ Pubmed: 31142835 DOI: doi:10.1038/s41586-019-1229-9 ]

Sort by: Download
Showing 1 - 10 of 42. Page 1 of 5
Display:
Statistics
×

Download











































Preview first 10
Download

Filter By

Current Database

  • EMDB [42]

Current status

  • REL [42]

Sample type

  • Virus [27]
  • Protein [20]
  • Sample [15]
  • Complex [12]
  • RNA [12]
  • Ligand [11]

Organism

  • Pseudomonas phage phi6 [42]
  • Mus musculus [12]

EM Method

  • Single-particle [30]
  • Helical reconstruction [12]

Resolution

  • ≥ 2Å and < 3Å [1]
  • ≥ 3Å and < 4Å [6]
  • ≥ 4Å and < 5Å [11]
  • ≥ 6Å and < 8Å [4]
  • ≥ 8Å and < 12Å [11]
  • ≥ 12Å and < 16Å [4]
  • ≥ 16Å and < 20Å [5]

Model molecular weight

  • 50-100 kDa [4]
  • 100-250 kDa [10]
  • > 10 MDa [4]

Release Date

  • 2021 [4]
  • 2019 [11]
  • 2018 [9]
  • 2017 [3]
  • 2015 [3]
  • 2013 [5]
  • 2009 [4]
  • 2007 [1]
  • 2006 [2]

Author by name

  • Huiskonen JT [21]
  • Ilca SL [18]
  • Sun X [18]
  • Kotecha A [17]
  • Stuart DI [17]
  • Poranen MM [15]
  • El Omari K [14]
  • De Haas F [13]
  • Modis Y [12]
  • Yu Q [12]
  • Dimaio F [11]
  • Grimes JM [11]
  • Heymann JB [9]
  • Mindich L [9]
  • Qiao J [9]
  • Steven AC [9]
  • Qu K [8]
  • Cheng N [5]
  • Nemecek D [5]
  • Herrero Del Valle A [4]
  • Sen A [4]
  • Singh R [4]
  • Butcher SJ [3]
  • Ilca S [3]
  • Poranen MP [3]
  • Sun Z [3]
  • Bamford DH [2]
  • Bubeck D [2]
  • Fuller SD [2]
  • Boura E [1]
  • Herrero Del Valle A [1]
  • Hurley JH [1]
  • Jaalinoja HT [1]
  • Plevka P [1]
  • Wu W [1]

Author by ORCID

  • Huiskonen JT [21]
  • Ilca SL [18]
  • Kotecha A [17]
  • Poranen MM [15]
  • Sun X [15]
  • De Haas F [13]
  • Modis Y [12]
  • Grimes JM [11]
  • Heymann JB [9]
  • Stuart DI [6]
  • Herrero Del Valle A [4]
  • Singh R [4]
  • Yu Q [4]
  • Butcher SJ [3]
  • Poranen MP [3]
  • El Omari K [3]
  • Bamford DH [2]
  • Boura E [1]
  • Plevka P [1]

Journal

  • NATURE [11]
  • NAT COMMUN [10]
  • MOL CELL [8]
  • J BIOL CHEM [4]
  • J VIROL [4]
  • STRUCTURE [4]
  • NUCLEIC ACIDS RES [2]
  • MBIO [1]

Software

  • RELION [30]
  • BSOFT [4]
  • BSOFT, PFT3DR [4]
  • CHIMERA, COOT, PHENIX [2]
  • CHIMERA, PHENIX [2]
  • CTFFIND [2]
  • P3DR [2]
  • CHIMERA, MDFF, COOT [1]
  • EMAN, BSOFT [1]
  • GCTF [1]
  • PFT2, EM3DR2, POR, P3DR [1]

Microscope

  • FEI TITAN KRIOS [24]
  • FEI/PHILIPS CM200FEG [8]
  • FEI POLARA 300 [7]
  • FEI TECNAI F20 [3]

Electron Source

  • FIELD EMISSION GUN [42]

Film or detector model

  • FEI FALCON II 4K X 4K [11]
  • FEI FALCON III 4K X 4K [10]
  • KODAK SO-163 FILM [8]
  • GATAN K2 SUMMIT 4K X 4K [6]
  • GATAN K2 QUANTUM 4K X 4K [2]
  • GATAN K3 6K X 4K [1]

External links

  • PDBe-Kb [19]
  • UniProt [19]
  • PDB [18]
  • Gene Ontology [14]
  • InterPro [14]
  • Pfam [14]
  • EMPIAR [13]
  • AlphaFold DB [12]
  • ChEBI [11]
  • ChEMBL [11]
  • DrugBank [11]
  • CATH [1]
  • SCOP2 [1]