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natural_source_ncbi_code:"10761"

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Current Database

  • EMDB [9]

Current status

  • REL [9]

Sample type

  • Virus [9]
  • Protein [6]
  • Sample [3]

Organism

  • Shigella phage sf6 [9]
  • Shigella phage sf6 [1]

EM Method

  • Single-particle [9]

Resolution

  • ≥ 2Å and < 3Å [3]
  • ≥ 3Å and < 4Å [3]
  • ≥ 6Å and < 8Å [2]
  • ≥ 16Å and < 20Å [1]

Model molecular weight

  • 100-250 kDa [1]
  • 1-2 MDa [2]
  • 2-5 MDa [2]
  • > 10 MDa [1]

Release Date

  • 2022 [5]
  • 2017 [1]
  • 2013 [3]

Author by name

  • Cingolani G [5]
  • Hou CD [5]
  • Li F [5]
  • Teschke CM [5]
  • Whitehead Iii R [5]
  • Yang R [5]
  • Baker TS [3]
  • Casjens SR [3]
  • Gilcrease EB [3]
  • Parent KN [3]
  • Tang J [2]
  • Aron KE [1]
  • Hou C [1]
  • Jiang W [1]
  • Li J [1]
  • Li K [1]
  • Lynn AY [1]
  • Tang L [1]
  • Yu G [1]
  • Zhao H [1]

Author by ORCID

  • Whitehead Iii R [5]
  • Li F [5]
  • Hou CD [5]
  • Cingolani G [5]
  • Yang R [5]
  • Baker TS [3]
  • Casjens SR [3]
  • Jiang W [1]

Journal

  • SCI ADV [5]
  • VIROLOGY [3]
  • PNAS [1]

Software

  • RELION [5]
  • AUTO3DEM [3]
  • CTFFIND [1]
  • JSPR [1]

Microscope

  • TFS KRIOS [5]
  • FEI POLARA 300 [3]
  • FEI TITAN KRIOS [1]

Electron Source

  • FIELD EMISSION GUN [9]

Film or detector model

  • GATAN K3 6K X 4K [5]
  • KODAK SO-163 FILM [3]
  • GATAN K2 SUMMIT 4K X 4K [1]

External links

  • PDB [6]
  • UniProt [5]
  • InterPro [4]
  • PDBe-Kb [4]
  • Pfam [4]
  • Gene Ontology [3]
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EMD-26582
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In situ cryo-EM structure of bacteriophage Sf6 portal:gp7 complex at 2.7A resolution
Release date: Dec. 21, 2022
Resolution: 3.6 Å
EM Method: Single-particle
Fitted PDBs: 7ukj
Q-score: 0.448

Li F, Hou CD, Yang R, Whitehead III R, Teschke CM, Cingolani G

Sci Adv (2022) 8 pp. eadc9641-eadc9641 [ DOI: doi:10.1126/sciadv.adc9641 Pubmed: 36475795 ]

EMD-25372
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In situ cryo-EM structure of bacteriophage Sf6 gp3:gp7:gp5 complex in conformation 1 at 3.73A resolution
Release date: Nov. 23, 2022
Resolution: 3.73 Å
EM Method: Single-particle
Fitted PDBs: 7spu
Q-score: 0.495

Li F, Hou CD, Yang R, Whitehead III R, Teschke CM, Cingolani G

Sci Adv (2022) 8 pp. eadc9641-eadc9641 [ DOI: doi:10.1126/sciadv.adc9641 Pubmed: 36475795 ]

EMD-25101
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In situ cryo-EM structure of bacteriophage Sf6 portal:gp7 complex at 2.7A resolution
Release date: Nov. 9, 2022
Resolution: 2.76 Å
EM Method: Single-particle
Fitted PDBs: 7sfs
Q-score: 0.518

Li F, Hou CD, Yang R, Whitehead III R, Teschke CM, Cingolani G

Sci Adv (2022) 8 pp. eadc9641-eadc9641 [ DOI: doi:10.1126/sciadv.adc9641 Pubmed: 36475795 ]

EMD-25106
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In situ cryo-EM structure of bacteriophage Sf6 gp8:gp14N complex at 2.8 A resolution
Release date: Nov. 9, 2022
Resolution: 2.83 Å
EM Method: Single-particle
Fitted PDBs: 7sg7
Q-score: 0.572

Li F, Hou CD, Yang R, Whitehead III R, Teschke CM, Cingolani G

Sci Adv (2022) 8 pp. eadc9641-eadc9641 [ DOI: doi:10.1126/sciadv.adc9641 Pubmed: 36475795 ]

EMD-25365
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In situ cryo-EM structure of bacteriophage Sf6 gp3:gp7:gp5 complex in conformation 2 at 3.71A resolution
Release date: Nov. 9, 2022
Resolution: 3.71 Å
EM Method: Single-particle
Fitted PDBs: 7sp4
Q-score: 0.483

Li F, Hou CD, Yang R, Whitehead III R, Teschke CM, Cingolani G

Sci Adv (2022) 8 pp. eadc9641-eadc9641 [ DOI: doi:10.1126/sciadv.adc9641 Pubmed: 36475795 ]

EMD-8314
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Architecture of a headful DNA-packaging bacterial virus at 2.89 Angstrom resolution by electron cryo-microscopy
Release date: March 22, 2017
Resolution: 2.89 Å
EM Method: Single-particle
Fitted PDBs: 5l35
Q-score: 0.605

Zhao H, Li K, Lynn AY, Aron KE, Yu G, Jiang W, Tang L

PNAS (2017) 114 pp. 3601-3606 [ Pubmed: 28320961 DOI: doi:10.1073/pnas.1615025114 ]

EMD-5724
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Bacteriophage Sf6 procapsid
Release date: Aug. 7, 2013
Resolution: 7.0 Å
EM Method: Single-particle

Parent KN, Gilcrease EB, Casjens SR, Baker TS

Virology (2012) 427 pp. 177-188 [ Pubmed: 22386055 DOI: doi:10.1016/j.virol.2012.01.040 ]

EMD-5728
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Icosahedrally-averaged bacteriophage Sf6 virion
Release date: Aug. 7, 2013
Resolution: 6.0 Å
EM Method: Single-particle

Parent KN, Gilcrease EB, Casjens SR, Baker TS

Virology (2012) 427 pp. 177-188 [ Pubmed: 22386055 DOI: doi:10.1016/j.virol.2012.01.040 ]

EMD-5730
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Asymmetric reconstruction of phage Sf6
Release date: Aug. 7, 2013
Resolution: 16.0 Å
EM Method: Single-particle

Parent KN, Gilcrease EB, Casjens SR, Baker TS

Virology (2012) 427 pp. 177-188 [ Pubmed: 22386055 DOI: doi:10.1016/j.virol.2012.01.040 ]

Sort by: Download
Showing 1 - 9 of 9. Page 1 of 1
Display:
Statistics
×

Download











































Preview first 10
Download

Filter By

Current Database

  • EMDB [9]

Current status

  • REL [9]

Sample type

  • Virus [9]
  • Protein [6]
  • Sample [3]

Organism

  • Shigella phage sf6 [9]
  • Shigella phage sf6 [1]

EM Method

  • Single-particle [9]

Resolution

  • ≥ 2Å and < 3Å [3]
  • ≥ 3Å and < 4Å [3]
  • ≥ 6Å and < 8Å [2]
  • ≥ 16Å and < 20Å [1]

Model molecular weight

  • 100-250 kDa [1]
  • 1-2 MDa [2]
  • 2-5 MDa [2]
  • > 10 MDa [1]

Release Date

  • 2022 [5]
  • 2017 [1]
  • 2013 [3]

Author by name

  • Cingolani G [5]
  • Hou CD [5]
  • Li F [5]
  • Teschke CM [5]
  • Whitehead Iii R [5]
  • Yang R [5]
  • Baker TS [3]
  • Casjens SR [3]
  • Gilcrease EB [3]
  • Parent KN [3]
  • Tang J [2]
  • Aron KE [1]
  • Hou C [1]
  • Jiang W [1]
  • Li J [1]
  • Li K [1]
  • Lynn AY [1]
  • Tang L [1]
  • Yu G [1]
  • Zhao H [1]

Author by ORCID

  • Whitehead Iii R [5]
  • Li F [5]
  • Hou CD [5]
  • Cingolani G [5]
  • Yang R [5]
  • Baker TS [3]
  • Casjens SR [3]
  • Jiang W [1]

Journal

  • SCI ADV [5]
  • VIROLOGY [3]
  • PNAS [1]

Software

  • RELION [5]
  • AUTO3DEM [3]
  • CTFFIND [1]
  • JSPR [1]

Microscope

  • TFS KRIOS [5]
  • FEI POLARA 300 [3]
  • FEI TITAN KRIOS [1]

Electron Source

  • FIELD EMISSION GUN [9]

Film or detector model

  • GATAN K3 6K X 4K [5]
  • KODAK SO-163 FILM [3]
  • GATAN K2 SUMMIT 4K X 4K [1]

External links

  • PDB [6]
  • UniProt [5]
  • InterPro [4]
  • PDBe-Kb [4]
  • Pfam [4]
  • Gene Ontology [3]