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natural_source_ncbi_code:"10515"

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Current Database

  • EMDB [10]

Current status

  • REL [10]

Sample type

  • Protein [8]
  • Complex [6]
  • Ligand [6]
  • RNA [3]
  • Cellular component [2]
  • Sample [2]
  • Virus [2]

Organism

  • Human mastadenovirus c [10]
  • Homo sapiens [6]
  • Mus musculus [1]
  • Human mastadenovirus b [1]

EM Method

  • Single-particle [10]

Resolution

  • ≥ 3Å and < 4Å [8]
  • ≥ 8Å and < 12Å [1]
  • ≥ 20Å and < 30Å [1]

Model molecular weight

  • 50-100 kDa [2]
  • 100-250 kDa [2]
  • 500-1000 kDa [1]
  • 2-5 MDa [3]

Release Date

  • 2025 [2]
  • 2024 [1]
  • 2023 [2]
  • 2019 [2]
  • 2017 [1]
  • 2009 [1]
  • 2002 [1]

Author by name

  • An HJ [2]
  • Bhalla M [2]
  • Choi S [2]
  • Han A [2]
  • Han AR [2]
  • Jeong H [2]
  • Jo HY [2]
  • Kang H [2]
  • Kim HM [2]
  • Koh W [2]
  • Kwon J [2]
  • Lee CJ [2]
  • Lee H [2]
  • Lee JM [2]
  • Li H [2]
  • Liu Q [2]
  • Liu Z [2]
  • Maria-solano MA [2]
  • Nagai K [2]
  • Roh WS [2]
  • Shao L [2]
  • Shi Y [2]
  • Wilkinson ME [2]
  • Xiang Y [2]
  • Yang J [2]
  • Zhang A [2]
  • Arenzana TL [1]
  • Azumaya C [1]
  • Burnett RM [1]
  • Charenton C [1]
  • Chiu C [1]
  • Comps-agrar L [1]
  • Curiel DT [1]
  • Dmitriev IP [1]
  • Fica SM [1]
  • Finci IL [1]
  • Finci LI [1]
  • Flint SJ [1]
  • Fuller SD [1]
  • Hang J [1]
  • Ho H [1]
  • Janezic E [1]
  • Johnson M [1]
  • Joshi P [1]
  • Koerber JT [1]
  • Lei J [1]
  • Mangel WF [1]
  • Marabini R [1]
  • Masureel M [1]
  • Menendez-conejero R [1]
  • Newman AJ [1]
  • Nicoludis JM [1]
  • Noreng S [1]
  • Oubridge C [1]
  • Payandeh J [1]
  • Perez-berna AJ [1]
  • Rutz S [1]
  • San Martin C [1]
  • Scheres SHW [1]
  • Seki A [1]
  • Stewart PL [1]
  • Sun D [1]
  • Sun Y [1]
  • Tam C [1]
  • Wang B [1]
  • Wang J [1]
  • Yan C [1]
  • Zhang X [1]
  • Zhou T [1]

Author by ORCID

  • Lee JM [2]
  • Bhalla M [2]
  • Liu Q [2]
  • Roh WS [2]
  • Lee CJ [2]
  • Koh W [2]
  • Choi S [2]
  • Maria-solano MA [2]
  • Kim HM [2]
  • Xiang Y [2]
  • Nagai K [2]
  • Han AR [2]
  • Lee H [2]
  • Wilkinson ME [2]
  • Koerber JT [1]
  • Marabini R [1]
  • Oubridge C [1]
  • Fica SM [1]
  • Yan C [1]
  • San Martin C [1]
  • Scheres SHW [1]
  • Johnson M [1]
  • Janezic E [1]
  • Nicoludis JM [1]
  • Payandeh J [1]
  • Masureel M [1]
  • Comps-agrar L [1]
  • Charenton C [1]
  • Zhang X [1]
  • Shi Y [1]
  • Rutz S [1]
  • Newman AJ [1]
  • Perez-berna AJ [1]
  • Joshi P [1]
  • Zhou T [1]

Journal

  • NAT COMMUN [5]
  • SCIENCE [2]
  • CELL [1]
  • EMBO J [1]
  • J MOL BIOL [1]

Software

  • RELION [3]
  • CRYOSPARC [2]
  • EMBL-ICOS [1]
  • MAXIMIZING CROSS CORRELATION [1]
  • URO [1]
  • XMIPP, CTFFIND [1]

Microscope

  • FEI TITAN KRIOS [6]
  • TFS KRIOS [2]
  • FEI TECNAI F20 [1]
  • FEI/PHILIPS EM400 [1]

Electron Source

  • FIELD EMISSION GUN [9]
  • TUNGSTEN HAIRPIN [1]

Film or detector model

  • GATAN K2 SUMMIT 4K X 4K [3]
  • GATAN K3 6K X 4K [2]
  • GATAN K3 BIOQUANTUM 6K X 4K [2]
  • KODAK SO-163 FILM [2]
  • FEI FALCON IV 4K X 4K [1]

External links

  • PDB [8]
  • UniProt [8]
  • ChEBI [6]
  • ChEMBL [6]
  • Gene Ontology [6]
  • InterPro [6]
  • Pfam [6]
  • AlphaFold DB [4]
  • DrugBank [4]
  • PDBe-Kb [4]
  • Complex Portal [3]
  • EMPIAR [1]
  • SCOP2 [1]
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Showing 1 - 10 of 10. Page 1 of 1
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EMD-60935
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3D View
Structure of Adenovirus serotype 2 100K
Release date: May 14, 2025
Resolution: 3.79 Å
EM Method: Single-particle
Fitted PDBs: 9ivw
Q-score: 0.274

Li H, Shao L, Liu Z, Liu Q, Xiang Y

Nat Commun (2025) 16 pp. 4013-4013 [ Pubmed: 40301360 DOI: doi:10.1038/s41467-025-59301-4 ]

EMD-60936
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3D View
CryoEM structure of Adenovirus serotype 3 premature hexon in complex with Adenovirus serotype 2 100K
Release date: May 14, 2025
Resolution: 3.23 Å
EM Method: Single-particle
Fitted PDBs: 9ivx
Q-score: 0.352

Li H, Shao L, Liu Z, Liu Q, Xiang Y

Nat Commun (2025) 16 pp. 4013-4013 [ Pubmed: 40301360 DOI: doi:10.1038/s41467-025-59301-4 ]

EMD-37069
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3D View
Cryo-EM structure of human TMEM87A A308M
Release date: July 10, 2024
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 8kb4
Q-score: 0.507

Kang H, Han AR, Zhang A, Jeong H, Koh W, Lee JM, Lee H, Jo HY, Maria-Solano MA, Bhalla M, Kwon J, Roh WS, Yang J, An HJ, Choi S, Kim HM, Lee CJ

Nat Commun (2024) 15 pp. 5830-5830 [ DOI: doi:10.1038/s41467-024-49297-8 Pubmed: 38992057 ]

EMD-35017
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Cryo-EM structure of human TMEM87A, gluconate-bound
Release date: Dec. 27, 2023
Resolution: 3.6 Å
EM Method: Single-particle
Fitted PDBs: 8htt
Q-score: 0.427

Kang H, Han AR, Zhang A, Jeong H, Koh W, Lee JM, Lee H, Jo HY, Maria-Solano MA, Bhalla M, Kwon J, Roh WS, Yang J, An HJ, Choi S, Kim HM, Lee CJ

Nat Commun (2024) 15 pp. 5830-5830 [ DOI: doi:10.1038/s41467-024-49297-8 Pubmed: 38992057 ]

EMD-41829
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3D View
Structure of a class A GPCR/agonist complex
Release date: Dec. 20, 2023
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 8u1u
Q-score: 0.515

Sun D, Sun Y, Janezic E, Zhou T, Johnson M, Azumaya C, Noreng S, Chiu C, Seki A, Arenzana TL, Nicoludis JM, Shi Y, Wang B, Ho H, Joshi P, Tam C, Payandeh J, Comps-Agrar L, Wang J, Rutz S, Koerber JT, Masureel M

Nat Commun (2023) 14 pp. 7940-7940 [ Pubmed: 38040762 DOI: doi:10.1038/s41467-023-43601-8 ]

EMD-4665
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Raw data
EMPIAR-10307
Structure of a human fully-assembled precatalytic spliceosome pre-B complex .
Release date: April 17, 2019
Resolution: 3.28 Å
EM Method: Single-particle
Fitted PDBs: 6qx9
Q-score: 0.207

Charenton C, Wilkinson ME, Nagai K

Science (2019) 364 pp. 362-367 [ DOI: doi:10.1126/science.aax3289 Pubmed: 30975767 ]

EMD-4525
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Human post-catalytic spliceosome P complex stalled with DHX8 K594A mutant, overall map
Release date: Feb. 20, 2019
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 6qdv
Q-score: 0.278

Fica SM, Oubridge C, Wilkinson ME, Newman AJ, Nagai K

Science (2019) 363 pp. 710-714 [ DOI: doi:10.1126/science.aaw5569 Pubmed: 30705154 ]

EMD-6721
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3D View
Cryo-EM structure of the human spliceosome just prior to exon ligation at 3.6 angstrom
Release date: July 5, 2017
Resolution: 3.6 Å
EM Method: Single-particle
Fitted PDBs: 5xjc
Q-score: 0.22

Zhang X, Yan C, Hang J, Finci LI, Lei J, Shi Y

Cell (2017) 169 pp. 918-929.e14 [ Pubmed: 28502770 DOI: doi:10.1016/j.cell.2017.04.033 ]

EMD-1586
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Human Adenovirus type 2 ts1 mutant
Release date: July 2, 2009
Resolution: 8.7 Å
EM Method: Single-particle

Perez-Berna AJ, Marabini R, Scheres SHW, Menendez-Conejero R, Dmitriev IP, Curiel DT, Mangel WF, Flint SJ, San Martin C

J Mol Biol (2009) 392 pp. 547-557 [ Pubmed: 19563809 DOI: doi:10.1016/j.jmb.2009.06.057 ]

EMD-1016
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Difference imaging of adenovirus: bridging the resolution gap between X-ray crystallography and electron microscopy.
Release date: Oct. 15, 2002
Resolution: 25.0 Å
EM Method: Single-particle

Stewart PL, Fuller SD, Burnett RM

EMBO J (1993) 12 pp. 2589-2599 [ Pubmed: 8334984 ]

Sort by: Download
Showing 1 - 10 of 10. Page 1 of 1
Display:
Statistics
×

Download











































Preview first 10
Download

Filter By

Current Database

  • EMDB [10]

Current status

  • REL [10]

Sample type

  • Protein [8]
  • Complex [6]
  • Ligand [6]
  • RNA [3]
  • Cellular component [2]
  • Sample [2]
  • Virus [2]

Organism

  • Human mastadenovirus c [10]
  • Homo sapiens [6]
  • Mus musculus [1]
  • Human mastadenovirus b [1]

EM Method

  • Single-particle [10]

Resolution

  • ≥ 3Å and < 4Å [8]
  • ≥ 8Å and < 12Å [1]
  • ≥ 20Å and < 30Å [1]

Model molecular weight

  • 50-100 kDa [2]
  • 100-250 kDa [2]
  • 500-1000 kDa [1]
  • 2-5 MDa [3]

Release Date

  • 2025 [2]
  • 2024 [1]
  • 2023 [2]
  • 2019 [2]
  • 2017 [1]
  • 2009 [1]
  • 2002 [1]

Author by name

  • An HJ [2]
  • Bhalla M [2]
  • Choi S [2]
  • Han A [2]
  • Han AR [2]
  • Jeong H [2]
  • Jo HY [2]
  • Kang H [2]
  • Kim HM [2]
  • Koh W [2]
  • Kwon J [2]
  • Lee CJ [2]
  • Lee H [2]
  • Lee JM [2]
  • Li H [2]
  • Liu Q [2]
  • Liu Z [2]
  • Maria-solano MA [2]
  • Nagai K [2]
  • Roh WS [2]
  • Shao L [2]
  • Shi Y [2]
  • Wilkinson ME [2]
  • Xiang Y [2]
  • Yang J [2]
  • Zhang A [2]
  • Arenzana TL [1]
  • Azumaya C [1]
  • Burnett RM [1]
  • Charenton C [1]
  • Chiu C [1]
  • Comps-agrar L [1]
  • Curiel DT [1]
  • Dmitriev IP [1]
  • Fica SM [1]
  • Finci IL [1]
  • Finci LI [1]
  • Flint SJ [1]
  • Fuller SD [1]
  • Hang J [1]
  • Ho H [1]
  • Janezic E [1]
  • Johnson M [1]
  • Joshi P [1]
  • Koerber JT [1]
  • Lei J [1]
  • Mangel WF [1]
  • Marabini R [1]
  • Masureel M [1]
  • Menendez-conejero R [1]
  • Newman AJ [1]
  • Nicoludis JM [1]
  • Noreng S [1]
  • Oubridge C [1]
  • Payandeh J [1]
  • Perez-berna AJ [1]
  • Rutz S [1]
  • San Martin C [1]
  • Scheres SHW [1]
  • Seki A [1]
  • Stewart PL [1]
  • Sun D [1]
  • Sun Y [1]
  • Tam C [1]
  • Wang B [1]
  • Wang J [1]
  • Yan C [1]
  • Zhang X [1]
  • Zhou T [1]

Author by ORCID

  • Lee JM [2]
  • Bhalla M [2]
  • Liu Q [2]
  • Roh WS [2]
  • Lee CJ [2]
  • Koh W [2]
  • Choi S [2]
  • Maria-solano MA [2]
  • Kim HM [2]
  • Xiang Y [2]
  • Nagai K [2]
  • Han AR [2]
  • Lee H [2]
  • Wilkinson ME [2]
  • Koerber JT [1]
  • Marabini R [1]
  • Oubridge C [1]
  • Fica SM [1]
  • Yan C [1]
  • San Martin C [1]
  • Scheres SHW [1]
  • Johnson M [1]
  • Janezic E [1]
  • Nicoludis JM [1]
  • Payandeh J [1]
  • Masureel M [1]
  • Comps-agrar L [1]
  • Charenton C [1]
  • Zhang X [1]
  • Shi Y [1]
  • Rutz S [1]
  • Newman AJ [1]
  • Perez-berna AJ [1]
  • Joshi P [1]
  • Zhou T [1]

Journal

  • NAT COMMUN [5]
  • SCIENCE [2]
  • CELL [1]
  • EMBO J [1]
  • J MOL BIOL [1]

Software

  • RELION [3]
  • CRYOSPARC [2]
  • EMBL-ICOS [1]
  • MAXIMIZING CROSS CORRELATION [1]
  • URO [1]
  • XMIPP, CTFFIND [1]

Microscope

  • FEI TITAN KRIOS [6]
  • TFS KRIOS [2]
  • FEI TECNAI F20 [1]
  • FEI/PHILIPS EM400 [1]

Electron Source

  • FIELD EMISSION GUN [9]
  • TUNGSTEN HAIRPIN [1]

Film or detector model

  • GATAN K2 SUMMIT 4K X 4K [3]
  • GATAN K3 6K X 4K [2]
  • GATAN K3 BIOQUANTUM 6K X 4K [2]
  • KODAK SO-163 FILM [2]
  • FEI FALCON IV 4K X 4K [1]

External links

  • PDB [8]
  • UniProt [8]
  • ChEBI [6]
  • ChEMBL [6]
  • Gene Ontology [6]
  • InterPro [6]
  • Pfam [6]
  • AlphaFold DB [4]
  • DrugBank [4]
  • PDBe-Kb [4]
  • Complex Portal [3]
  • EMPIAR [1]
  • SCOP2 [1]