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grant_funding_details:"National Institutes of Health/National Institute of General Medical Sciences"

Filter By

Current Database

  • EMDB [10676]

Current status

  • REL [10676]

Sample type

  • Complex [9432]
  • Protein [6788]
  • Ligand [4232]
  • RNA [1354]
  • DNA [1022]
  • Cellular component [583]
  • Virus [521]
  • Cell [206]
  • Other [54]
  • Tissue [3]

Organism

  • Homo sapiens [3479]
  • Synthetic construct [1435]
  • Escherichia coli [852]
  • Saccharomyces cerevisiae [669]
  • Mus musculus [620]
  • Escherichia coli [386]
  • Oryctolagus cuniculus [350]
  • Rattus norvegicus [254]
  • Xenopus laevis [233]
  • Sus scrofa [196]
  • Bos taurus [179]
  • Saccharomyces cerevisiae [159]
  • Severe acute respiratory syndrome coronavirus [147]
  • Enterobacteria phage m13 [136]
  • Lama glama [134]
  • Leishmania tarentolae [128]
  • Saccharomyces cerevisiae [125]
  • Human immunodeficiency virus 1 [120]
  • Gallus gallus [85]
  • Danio rerio [76]
  • Tetrahymena thermophila [72]
  • Arabidopsis thaliana [59]
  • Drosophila melanogaster [56]
  • Chlamydomonas reinhardtii [52]
  • Mycobacterium tuberculosis [45]
  • Mycolicibacterium smegmatis [42]
  • Trichomonas vaginalis [41]
  • Enterobacteria phage t4 [40]
  • Streptococcus pyogenes [39]
  • Adeno-associated virus [38]
  • Salpingoeca rosetta (strain atcc 50818 / bsb-021) [38]
  • Phomopsis amygdali [36]
  • Pseudomonas aeruginosa [36]
  • Schizosaccharomyces pombe [33]
  • Bacillus subtilis [32]
  • Saccharolobus solfataricus [32]
  • Parengyodontium album [32]
  • Saccharomyces cerevisiae [31]
  • Escherichia virus t7 [30]
  • Azotobacter vinelandii [30]
  • Middle east respiratory syndrome-related coronavirus [29]
  • Thermotoga maritima [29]
  • Caenorhabditis elegans [27]
  • Azotobacter vinelandii [26]
  • Vibrio cholerae [26]
  • Listeria innocua [24]
  • Schizosaccharomyces pombe [24]
  • Influenza a virus [23]
  • Pseudomonas aeruginosa [23]
  • Escherichia phage lambda [23]
  • (no species) [22]
  • Human herpesvirus 1 [21]
  • Pyrococcus furiosus [21]
  • Mycobacterium phage bxb1 [21]
  • Human herpesvirus 1 [19]
  • Dickeya dadantii [19]
  • Dna molecule [19]
  • Legionella pneumophila [19]
  • Trypanosoma brucei [19]
  • Streptococcus pyogenes [18]
  • Caldimonas thermodepolymerans [18]
  • Caulobacter vibrioides [18]
  • (no species) [17]
  • Cypovirus 1 [17]
  • Staphylococcus aureus [17]
  • Thermoanaerobaculum aquaticum [17]
  • Chikungunya virus [17]
  • Methylococcus capsulatus [16]
  • Thermus thermophilus [16]
  • Strongylocentrotus purpuratus [16]
  • Synechocystis sp. pcc 6803 [15]
  • Streptococcus thermophilus [15]
  • Chaetomium thermophilum [15]
  • Streptomyces lasalocidi [15]
  • Mycobacterium tuberculosis [15]
  • Macaca mulatta [15]
  • Bacillus subtilis [14]
  • Peltigera membranacea [14]
  • Fusarium vanettenii [14]
  • Parus major [14]
  • Hepacivirus c [13]
  • Indiana vesiculovirus [13]
  • Taura syndrome virus [13]
  • Acetivibrio thermocellus [13]
  • Aquifex aeolicus [13]
  • Plasmodium falciparum [13]
  • Adeno-associated dependoparvovirus a [12]
  • Sulfolobus monocaudavirus smv1 [12]
  • Clostridioides difficile [12]
  • Spirochaeta thermophila [12]
  • Saccharopolyspora erythraea [12]
  • Helicobacter pylori [12]
  • Trichoplusia ni [12]
  • Xenopus borealis [12]
  • Human herpesvirus 1 [11]
  • Epstein-barr virus (strain gd1) [11]
  • Thermotoga maritima [11]
  • Agrobacterium phage milano [11]
  • Enquatrovirus n4 [11]
  • Candida albicans [11]

EM Method

  • Single-particle [8751]
  • Tomography [1017]
  • Helical reconstruction [434]
  • Subtomogram averaging [413]
  • Electron Crystallography [61]

Resolution

  • < 2Å [83]
  • ≥ 2Å and < 3Å [2231]
  • ≥ 3Å and < 4Å [4684]
  • ≥ 4Å and < 5Å [1059]
  • ≥ 5Å and < 6Å [292]
  • ≥ 6Å and < 8Å [488]
  • ≥ 8Å and < 12Å [376]
  • ≥ 12Å and < 16Å [166]
  • ≥ 16Å and < 20Å [66]
  • ≥ 20Å and < 30Å [308]
  • ≥ 30Å [658]

Model molecular weight

  • 0-50 kDa [115]
  • 50-100 kDa [298]
  • 100-250 kDa [1765]
  • 250-500 kDa [1747]
  • 500-1000 kDa [759]
  • 1-2 MDa [351]
  • 2-5 MDa [549]
  • 5-10 MDa [67]
  • > 10 MDa [55]

Release Date

  • 2026 [1414]
  • 2025 [2479]
  • 2024 [1689]
  • 2023 [1315]
  • 2022 [1187]
  • 2021 [790]
  • 2020 [716]
  • 2019 [439]
  • 2018 [340]
  • 2017 [202]
  • 2016 [105]

Author by name

  • Liu J [932]
  • Ren G [809]
  • Zhang M [568]
  • Wang S [405]
  • Wu H [365]
  • Hu Z [355]
  • Gang O [343]
  • Zhou ZH [293]
  • Lei D [254]
  • Brown A [246]
  • Li H [246]
  • Lyumkis D [241]
  • Williamson JR [241]
  • Zhang K [224]
  • Wang Y [218]
  • Li S [217]
  • Chiu W [208]
  • Klinge S [197]
  • Wu C [189]
  • Andersen ES [186]
  • Geary C [186]
  • Mcrae EKS [186]
  • Sheng K [180]
  • Lee J [179]
  • Li Y [179]
  • Zhang R [177]
  • Louder RK [173]
  • Cheng Y [165]
  • Park G [164]
  • Wang F [164]
  • Egelman EH [163]
  • Dong X [159]
  • Zhang J [141]
  • Zhao Y [140]
  • Wang C [138]
  • Frank J [137]
  • Wang J [137]
  • Su H [135]
  • Zhou L [135]
  • Nogales E [133]
  • Huang C [132]
  • Castro C [131]
  • Castro CE [131]
  • He Y [131]
  • Huang CM [131]
  • Marras A [131]
  • Marras AE [131]
  • Smith J [131]
  • Su HJ [131]
  • Huang W [130]
  • Zhang Z [128]
  • Doran MH [127]
  • Beneke T [126]
  • Fochler S [126]
  • Gluenz E [126]
  • Wheeler RJ [126]
  • Dominguez R [122]
  • Zeng J [122]
  • Buzovetsky O [121]
  • Niu Q [121]
  • Rabuck-gibbons JN [120]
  • Veesler D [118]
  • Zhang Y [118]
  • Kollman JM [117]
  • Agard DA [116]
  • Kossiakoff AA [116]
  • Darst SA [115]
  • Zhang X [115]
  • Chai P [114]
  • Li X [112]
  • Yang J [109]
  • Korostelev AA [108]
  • Hite RK [105]
  • Liu H [103]
  • Lander GC [100]
  • Sun C [97]
  • Li Z [95]
  • Carragher B [94]
  • Chen J [94]
  • Potter CS [94]
  • Taylor DW [94]
  • Liu Y [93]
  • Mckenna R [93]
  • Wang L [93]
  • Chipman P [91]
  • Murakami K [91]
  • Wang H [91]
  • Chen Z [90]
  • Yu Z [90]
  • Davis JH [88]
  • Han GW [87]
  • Karakas E [87]
  • Du J [86]
  • Fort C [86]
  • Schmid MF [86]
  • Walker BJ [86]
  • Kaelber JT [84]
  • Anderson JR [83]
  • Li Q [83]
  • Marmorstein R [83]

Author by ORCID

  • Ren G [783]
  • Liu J [691]
  • Brown A [242]
  • Zhou ZH [231]
  • Lyumkis D [213]
  • Chiu W [188]
  • Andersen ES [186]
  • Geary C [186]
  • Klinge S [183]
  • Zhang M [170]
  • Williamson JR [162]
  • Lei D [162]
  • Cheng Y [157]
  • Zhou L [131]
  • Castro CE [131]
  • Marras AE [131]
  • Su HJ [131]
  • Zhang R [131]
  • Doran MH [126]
  • Beneke T [125]
  • Wheeler RJ [125]
  • Gluenz E [125]
  • Fochler S [125]
  • Zeng J [121]
  • Niu Q [120]
  • Dominguez R [116]
  • Korostelev AA [102]
  • Egelman EH [101]
  • Hite RK [99]
  • Huang W [98]
  • Agard DA [97]
  • Wang F [92]
  • Chipman P [87]
  • Sun C [86]
  • Li H [86]
  • Kollman JM [85]
  • Fort C [85]
  • Zhang K [82]
  • Nogales E [82]
  • Taylor DW [82]
  • Darst SA [81]
  • Lei M [80]
  • Frank J [79]
  • Leung MR [79]
  • Kossiakoff AA [79]
  • Yang J [78]
  • Chai P [78]
  • Mckenna R [78]
  • Demo G [78]
  • Du J [78]
  • Davis JH [77]
  • Park YJ [77]
  • Aricescu AR [77]
  • Zeev-ben-mordehai T [76]
  • Noteborn WEM [76]
  • Lishko PV [75]
  • Marmorstein R [75]
  • Karakas E [74]
  • Kaelber JT [74]
  • Bai XC [74]
  • Palmer NJ [74]
  • Fromme JC [73]
  • Kwong PD [73]
  • Lander GC [73]
  • Kreutzberger MAB [72]
  • Pestova TV [71]
  • Walls AC [70]
  • Li X [69]
  • Leschziner AE [69]
  • Li H [69]
  • Rice WJ [68]
  • Schmid MF [67]
  • Frost A [67]
  • Molodtsov V [65]
  • Li N [65]
  • Veesler D [64]
  • Barrie KR [64]
  • Ebright RH [63]
  • Mietzsch M [62]
  • Malinauskas T [62]
  • Murakami K [61]
  • Lu W [61]
  • Hellen CUT [61]
  • Das R [60]
  • Han Y [60]
  • Gorman J [59]
  • Rebowski G [58]
  • Chen M [58]
  • Gati C [58]
  • He Y [57]
  • Ludtke SJ [57]
  • Tang Q [57]
  • Louder RK [57]
  • Nicastro D [56]
  • He Y [56]
  • Brown ZP [56]
  • Baker D [54]
  • Boczkowska M [54]
  • Schultz K [53]
  • Gagnon MG [53]

Journal

  • NAT COMMUN [2047]
  • TO BE PUBLISHED [1219]
  • NATURE [1141]
  • NAT STRUCT MOL BIOL [797]
  • BIORXIV [772]
  • PNAS [669]
  • SCI ADV [485]
  • SCIENCE [438]
  • ELIFE [422]
  • CELL [381]
  • MOL CELL [311]
  • STRUCTURE [232]
  • NUCLEIC ACIDS RES [184]
  • EMBO J [144]
  • CELL REP [118]
  • NAT CHEM BIOL [111]
  • SCI REP [102]
  • J MOL BIOL [94]
  • J BIOL CHEM [93]
  • NAT METHODS [86]
  • J VIROL [82]
  • ACTA CRYSTALLOGR D STRUCT BIOL [69]
  • CELL RES [59]
  • COMMUN BIOL [52]
  • BIOCHEMISTRY [51]
  • J CELL BIOL [51]
  • J STRUCT BIOL X [44]
  • J STRUCT BIOL [42]
  • PLOS PATHOG [42]
  • NAT MICROBIOL [37]
  • VIRUSES [35]
  • BIOCHIM BIOPHYS ACTA MOL CELL BIOL LIPIDS [31]
  • MBIO [30]
  • J AM CHEM SOC [29]
  • PROTEIN SCI [26]
  • CELL HOST MICROBE [24]
  • NAT NANOTECHNOL [22]
  • INT J MOL SCI [21]
  • ACS CENT SCI [20]
  • MOL BIOL CELL [20]
  • LIFE SCI ALLIANCE [18]
  • NEURON [18]
  • BLOOD [17]
  • J BACTERIOL [17]
  • IUCRJ [16]
  • RES SQ [16]
  • CELL DISCOV [15]
  • NAT CATAL [14]
  • DEV CELL [13]
  • J GEN VIROL [13]
  • MOL BRAIN [13]
  • RNA [13]
  • GENES DEV [12]
  • J LIPID RES [12]
  • PLOS BIOL [11]
  • CURR BIOL [10]
  • IMMUNITY [10]
  • ACS NANO [9]
  • ISCIENCE [9]
  • NAT PLANTS [8]
  • ADV SCI [7]
  • ANGEW CHEM INT ED ENGL [7]
  • CELL METAB. [7]
  • J EXP MED [7]
  • MOL THER METHODS CLIN DEV [7]
  • MOL.CELL PROTEOMICS [7]
  • ACTA NEUROPATHOL [6]
  • BIOMOLECULES [6]
  • BIOPHYS J [6]
  • CELL CHEM BIOL [6]
  • EMBO REP [6]
  • PNAS NEXUS [6]
  • PROTEOMICS [6]
  • BIOCHIM BIOPHYS ACTA MOL CELL RES [5]
  • INT J BIOL MACROMOL [5]
  • NAT BIOTECHNOL [5]
  • PROTEIN CELL [5]
  • VIROLOGY [5]
  • BIOMACROMOLECULES [4]
  • CELL MICROBIOL [4]
  • CHEM SCI [4]
  • J CELL SCI [4]
  • NANOSCALE [4]
  • NAT CARDIOVASC RES [4]
  • NAT MED [4]
  • NAT PROTOC [4]
  • NPJ DRUG DISCOV [4]
  • SCI TRANSL MED [4]
  • ACS CHEM BIOL [3]
  • ACS MACRO LETT [3]
  • ADV MATER [3]
  • BIOCHEM J [3]
  • CELL REP PHYS SCI [3]
  • CHEMISTRY [3]
  • FASEB J [3]
  • HELIYON [3]
  • J COMPUT CHEM [3]
  • MATTER [3]
  • PLANT CELL [3]
  • PLOS ONE [3]

Software

  • CRYOSPARC [3686]
  • RELION [2313]
  • CTFFIND [568]
  • GCTF [542]
  • IPET [421]
  • TOMOCTF [372]
  • FREALIGN [178]
  • PHENIX [167]
  • CISTEM [147]
  • IMOD [131]
  • COOT [113]
  • EMAN2 [96]
  • UCSF CHIMERAX [90]
  • WARP [83]
  • UCSF CHIMERA [63]
  • EMAN [50]
  • SPIDER [46]
  • AIMLESS [30]
  • DYNAMO [30]
  • PEET [30]
  • CRYOLO [28]
  • MATLAB [26]
  • TOMO3D [26]
  • CRYODRGN [23]
  • ETOMO [22]
  • APPION [21]
  • XMIPP [20]
  • CTFFIND3 [19]
  • CTFTILT [18]
  • AUTO3DEM [17]
  • JSPR [12]
  • EMCLARITY [8]
  • EMIRA [8]
  • ISOLDE [7]
  • PHASER [7]
  • XSCALE [7]
  • AV3 [6]
  • IHRSR [6]
  • REFMAC [6]
  • SPARX [6]
  • SPHIRE [6]
  • XDS [6]
  • EMREADY [5]
  • MOTIONCORR2 [5]
  • CTFFIND4 [4]
  • I3 [4]
  • PYTOM [4]
  • TOM TOOLBOX [4]
  • BSOFT [3]
  • FREALIX [3]
  • IMIRS [3]
  • MPSA [3]
  • NOVACTF [3]
  • SERIALEM [3]
  • TOMOALIGN [3]
  • ACE [2]
  • CTFPHASEFLIP [2]
  • DEEPEMHANCER [2]
  • EAMN [2]
  • EPU [2]
  • GCTF/RELION [2]
  • MOLREP [2]
  • SPARX/EMAN2 [2]
  • STOPGAP [2]
  • 3DMOD [1]
  • ACE, CTFFIND3 [1]
  • APPION HELIX BOXER [1]
  • CFTFIND [1]
  • CRYOSP [1]
  • DIALS [1]
  • E2CTF.PY [1]
  • ELITE3D [1]
  • EMAN BOXER [1]
  • EMAN, JSPR [1]
  • FREALIGNX [1]
  • GERELION [1]
  • IHRSH [1]
  • IMAGIC [1]
  • LEGINON [1]
  • M [1]
  • MATLAB SCRIPTS [1]
  • PHENIX.REFINE [1]
  • POINTLESS [1]
  • PROTOMO [1]
  • REION [1]
  • RELION2.1 [1]
  • ROSETTA [1]
  • RSREF [1]
  • SCIPION [1]
  • SPDER [1]
  • THUNDER [1]

Microscope

  • FEI TITAN KRIOS [5482]
  • TFS KRIOS [3099]
  • FEI TALOS ARCTICA [718]
  • TFS GLACIOS [353]
  • ZEISS LIBRA120PLUS [294]
  • FEI POLARA 300 [136]
  • FEI TECNAI F30 [120]
  • FEI TITAN [115]
  • FEI TECNAI F20 [91]
  • TFS TALOS [61]
  • FEI TECNAI ARCTICA [53]
  • FEI TECNAI 12 [37]
  • JEOL 3200FSC [33]
  • JEOL 2200FS [25]
  • JEOL 3200FS [16]
  • FEI TECNAI 20 [13]
  • JEOL CRYO ARM 300 [12]
  • JEOL 2100F [7]
  • FEI TECNAI SPIRIT [6]
  • JEOL 2100 [6]
  • TFS TALOS F200C [3]
  • TFS TITAN THEMIS [3]
  • FEI/PHILIPS CM10 [2]
  • FEI/PHILIPS CM120T [2]
  • FEI TECNAI SPHERA [1]
  • JEOL 1400 [1]
  • TFS TUNDRA [1]

Electron Source

  • FIELD EMISSION GUN [10301]
  • LAB6 [340]
  • OTHER [35]

Film or detector model

  • GATAN K3 6K X 4K [3599]
  • GATAN K3 BIOQUANTUM 6K X 4K [2634]
  • GATAN K2 SUMMIT 4K X 4K [2283]
  • FEI FALCON IV 4K X 4K [723]
  • GATAN ULTRASCAN 4000 4K X 4K [343]
  • TFS FALCON 4I 4K X 4K [293]
  • GATAN K2 QUANTUM 4K X 4K [208]
  • FEI FALCON III 4K X 4K [195]
  • GATAN K3 BIOCONTINUUM 6K X 4K [103]
  • FEI FALCON II 4K X 4K [76]
  • DIRECT ELECTRON DE-20 5K X 3K [46]
  • FEI CETA 4K X 4K [36]
  • GATAN K2 BASE 4K X 4K [33]
  • OTHER [28]
  • TVIPS TEMCAM-F416 4K X 4K [23]
  • DIRECT ELECTRON DE-64 8K X 8K [21]
  • GATAN ULTRASCAN 1000 2K X 2K [11]
  • TVIPS TEMCAM-F216 2K X 2K [8]
  • DIRECT ELECTRON APOLLO 4K X 4K [6]
  • DIRECT ELECTRON DE-16 4K X 4K [6]
  • FEI EAGLE 4K X 4K [5]
  • FEI FALCON I 4K X 4K [5]
  • AGFA SCIENTA FILM [4]
  • DIRECT ELECTRON DE-10 5K X 4K [4]
  • GATAN MULTISCAN [4]
  • KODAK SO-163 FILM [4]
  • DIRECT ELECTRON DE-12 4K X 3K [3]
  • TVIPS TEMCAM-F224 2K X 2K [3]
  • GATAN K2 4K X 4K [1]
  • GATAN K2 IS 4K X 4K [1]
  • GATAN ULTRASCAN 10000 10K X 10K [1]
  • TVIPS TEMCAM-F415 4K X 4K [1]

External links

  • PDB [10186]
  • UniProt [6021]
  • PDBe-Kb [5552]
  • AlphaFold DB [5374]
  • Gene Ontology [4608]
  • InterPro [4603]
  • Pfam [4343]
  • ChEBI [3614]
  • ChEMBL [3260]
  • DrugBank [3201]
  • Complex Portal [1664]
  • EMPIAR [1358]
  • SCOP2 [98]
  • CATH [81]
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EMD-49374
Download Map
3D View
Human SRCAP-CFDP1-nucleosome complex in the poised state of the H2A.Z histone exchange reaction composite structure
Composite map
CryoEM
Release date: Aug. 12, 2026
Resolution: 3.8 Å
EM Method: Single-particle
Fitted PDBs: 9nfv
Q-score: 0.355
Similar entry percentile: 32%

Park G, Wu C, Louder RK

Sci Adv (2026) 12 pp. eaei7728-eaei7728 [ DOI: doi:10.1126/sciadv.aei7728 Pubmed: 42536744 ]

EMD-49375
Download Map
3D View
Human SRCAP-CFDP1-nucleosome complex in the activated state of the H2A.Z histone exchange reaction composite structure
Composite map
CryoEM
Release date: Aug. 12, 2026
Resolution: 3.8 Å
EM Method: Single-particle
Fitted PDBs: 9nfw
Q-score: 0.358
Similar entry percentile: 32%

Park G, Wu C, Louder RK

Sci Adv (2026) 12 pp. eaei7728-eaei7728 [ DOI: doi:10.1126/sciadv.aei7728 Pubmed: 42536744 ]

EMD-49376
Download Map
3D View
Human SRCAP-CFDP1-hexasome complex in the evicted state of the H2A.Z histone exchange reaction composite structure
Composite map
CryoEM
Release date: Aug. 12, 2026
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 9nfx
Q-score: 0.46
Similar entry percentile: 49%

Park G, Wu C, Louder RK

Sci Adv (2026) 12 pp. eaei7728-eaei7728 [ DOI: doi:10.1126/sciadv.aei7728 Pubmed: 42536744 ]

EMD-49377
Download Map
3D View
Human SRCAP-CFDP1-prenucleosome complex in the pre-inserted state of the H2A.Z histone exchange reaction composite structure
Composite map
CryoEM
Release date: Aug. 12, 2026
Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 9nfy
Q-score: 0.441
Similar entry percentile: 45%

Park G, Wu C, Louder RK

Sci Adv (2026) 12 pp. eaei7728-eaei7728 [ DOI: doi:10.1126/sciadv.aei7728 Pubmed: 42536744 ]

EMD-49378
Download Map
3D View
Human SRCAP-nucleosome complex in the fully inserted state of the H2A.Z histone exchange reaction composite structure
Composite map
CryoEM
Release date: Aug. 12, 2026
Resolution: 3.8 Å
EM Method: Single-particle
Fitted PDBs: 9nfz
Q-score: 0.406
Similar entry percentile: 52%

Park G, Wu C, Louder RK

Sci Adv (2026) 12 pp. eaei7728-eaei7728 [ DOI: doi:10.1126/sciadv.aei7728 Pubmed: 42536744 ]

EMD-49379
Download Map
3D View
Human SRCAP-nucleosome complex in the pre-dissociation state of the H2A.Z histone exchange reaction composite structure
Composite map
CryoEM
Release date: Aug. 12, 2026
Resolution: 3.9 Å
EM Method: Single-particle
Fitted PDBs: 9ng0
Q-score: 0.395
Similar entry percentile: 54%

Park G, Wu C, Louder RK

Sci Adv (2026) 12 pp. eaei7728-eaei7728 [ DOI: doi:10.1126/sciadv.aei7728 Pubmed: 42536744 ]

EMD-49423
Download Map
3D View
Human SRCAP-CFDP1-nucleosome complex in the poised state of the H2A.Z histone exchange reaction consensus map filtered by local resolution
Consensus map
CryoEM
Release date: Aug. 12, 2026
Resolution: 3.8 Å
EM Method: Single-particle

Park G, Wu C, Louder RK

Sci Adv (2026) 12 pp. eaei7728-eaei7728 [ DOI: doi:10.1126/sciadv.aei7728 Pubmed: 42536744 ]

EMD-49424
Download Map
3D View
RuvBL core from poised state of SRCAP-CFDP1-nucleosome complex focused refinement
CryoEM
Focused map
Release date: Aug. 12, 2026
Resolution: 3.5 Å
EM Method: Single-particle

Park G, Wu C, Louder RK

Sci Adv (2026) 12 pp. eaei7728-eaei7728 [ DOI: doi:10.1126/sciadv.aei7728 Pubmed: 42536744 ]

EMD-49425
Download Map
3D View
Arp6-ZnHIT1 module from poised state of SRCAP-CFDP1-nucleosome complex focused refinement
CryoEM
Focused map
Release date: Aug. 12, 2026
Resolution: 4.0 Å
EM Method: Single-particle

Park G, Wu C, Louder RK

Sci Adv (2026) 12 pp. eaei7728-eaei7728 [ DOI: doi:10.1126/sciadv.aei7728 Pubmed: 42536744 ]

EMD-49426
Download Map
3D View
ATPase module from poised state of SRCAP-CFDP1-nucleosome complex focused refinement
Focused map
CryoEM
Release date: Aug. 12, 2026
Resolution: 4.3 Å
EM Method: Single-particle

Park G, Wu C, Louder RK

Sci Adv (2026) 12 pp. eaei7728-eaei7728 [ DOI: doi:10.1126/sciadv.aei7728 Pubmed: 42536744 ]

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Current Database

  • EMDB [10676]

Current status

  • REL [10676]

Sample type

  • Complex [9432]
  • Protein [6788]
  • Ligand [4232]
  • RNA [1354]
  • DNA [1022]
  • Cellular component [583]
  • Virus [521]
  • Cell [206]
  • Other [54]
  • Tissue [3]

Organism

  • Homo sapiens [3479]
  • Synthetic construct [1435]
  • Escherichia coli [852]
  • Saccharomyces cerevisiae [669]
  • Mus musculus [620]
  • Escherichia coli [386]
  • Oryctolagus cuniculus [350]
  • Rattus norvegicus [254]
  • Xenopus laevis [233]
  • Sus scrofa [196]
  • Bos taurus [179]
  • Saccharomyces cerevisiae [159]
  • Severe acute respiratory syndrome coronavirus [147]
  • Enterobacteria phage m13 [136]
  • Lama glama [134]
  • Leishmania tarentolae [128]
  • Saccharomyces cerevisiae [125]
  • Human immunodeficiency virus 1 [120]
  • Gallus gallus [85]
  • Danio rerio [76]
  • Tetrahymena thermophila [72]
  • Arabidopsis thaliana [59]
  • Drosophila melanogaster [56]
  • Chlamydomonas reinhardtii [52]
  • Mycobacterium tuberculosis [45]
  • Mycolicibacterium smegmatis [42]
  • Trichomonas vaginalis [41]
  • Enterobacteria phage t4 [40]
  • Streptococcus pyogenes [39]
  • Adeno-associated virus [38]
  • Salpingoeca rosetta (strain atcc 50818 / bsb-021) [38]
  • Phomopsis amygdali [36]
  • Pseudomonas aeruginosa [36]
  • Schizosaccharomyces pombe [33]
  • Bacillus subtilis [32]
  • Saccharolobus solfataricus [32]
  • Parengyodontium album [32]
  • Saccharomyces cerevisiae [31]
  • Escherichia virus t7 [30]
  • Azotobacter vinelandii [30]
  • Middle east respiratory syndrome-related coronavirus [29]
  • Thermotoga maritima [29]
  • Caenorhabditis elegans [27]
  • Azotobacter vinelandii [26]
  • Vibrio cholerae [26]
  • Listeria innocua [24]
  • Schizosaccharomyces pombe [24]
  • Influenza a virus [23]
  • Pseudomonas aeruginosa [23]
  • Escherichia phage lambda [23]
  • (no species) [22]
  • Human herpesvirus 1 [21]
  • Pyrococcus furiosus [21]
  • Mycobacterium phage bxb1 [21]
  • Human herpesvirus 1 [19]
  • Dickeya dadantii [19]
  • Dna molecule [19]
  • Legionella pneumophila [19]
  • Trypanosoma brucei [19]
  • Streptococcus pyogenes [18]
  • Caldimonas thermodepolymerans [18]
  • Caulobacter vibrioides [18]
  • (no species) [17]
  • Cypovirus 1 [17]
  • Staphylococcus aureus [17]
  • Thermoanaerobaculum aquaticum [17]
  • Chikungunya virus [17]
  • Methylococcus capsulatus [16]
  • Thermus thermophilus [16]
  • Strongylocentrotus purpuratus [16]
  • Synechocystis sp. pcc 6803 [15]
  • Streptococcus thermophilus [15]
  • Chaetomium thermophilum [15]
  • Streptomyces lasalocidi [15]
  • Mycobacterium tuberculosis [15]
  • Macaca mulatta [15]
  • Bacillus subtilis [14]
  • Peltigera membranacea [14]
  • Fusarium vanettenii [14]
  • Parus major [14]
  • Hepacivirus c [13]
  • Indiana vesiculovirus [13]
  • Taura syndrome virus [13]
  • Acetivibrio thermocellus [13]
  • Aquifex aeolicus [13]
  • Plasmodium falciparum [13]
  • Adeno-associated dependoparvovirus a [12]
  • Sulfolobus monocaudavirus smv1 [12]
  • Clostridioides difficile [12]
  • Spirochaeta thermophila [12]
  • Saccharopolyspora erythraea [12]
  • Helicobacter pylori [12]
  • Trichoplusia ni [12]
  • Xenopus borealis [12]
  • Human herpesvirus 1 [11]
  • Epstein-barr virus (strain gd1) [11]
  • Thermotoga maritima [11]
  • Agrobacterium phage milano [11]
  • Enquatrovirus n4 [11]
  • Candida albicans [11]

EM Method

  • Single-particle [8751]
  • Tomography [1017]
  • Helical reconstruction [434]
  • Subtomogram averaging [413]
  • Electron Crystallography [61]

Resolution

  • < 2Å [83]
  • ≥ 2Å and < 3Å [2231]
  • ≥ 3Å and < 4Å [4684]
  • ≥ 4Å and < 5Å [1059]
  • ≥ 5Å and < 6Å [292]
  • ≥ 6Å and < 8Å [488]
  • ≥ 8Å and < 12Å [376]
  • ≥ 12Å and < 16Å [166]
  • ≥ 16Å and < 20Å [66]
  • ≥ 20Å and < 30Å [308]
  • ≥ 30Å [658]

Model molecular weight

  • 0-50 kDa [115]
  • 50-100 kDa [298]
  • 100-250 kDa [1765]
  • 250-500 kDa [1747]
  • 500-1000 kDa [759]
  • 1-2 MDa [351]
  • 2-5 MDa [549]
  • 5-10 MDa [67]
  • > 10 MDa [55]

Release Date

  • 2026 [1414]
  • 2025 [2479]
  • 2024 [1689]
  • 2023 [1315]
  • 2022 [1187]
  • 2021 [790]
  • 2020 [716]
  • 2019 [439]
  • 2018 [340]
  • 2017 [202]
  • 2016 [105]

Author by name

  • Liu J [932]
  • Ren G [809]
  • Zhang M [568]
  • Wang S [405]
  • Wu H [365]
  • Hu Z [355]
  • Gang O [343]
  • Zhou ZH [293]
  • Lei D [254]
  • Brown A [246]
  • Li H [246]
  • Lyumkis D [241]
  • Williamson JR [241]
  • Zhang K [224]
  • Wang Y [218]
  • Li S [217]
  • Chiu W [208]
  • Klinge S [197]
  • Wu C [189]
  • Andersen ES [186]
  • Geary C [186]
  • Mcrae EKS [186]
  • Sheng K [180]
  • Lee J [179]
  • Li Y [179]
  • Zhang R [177]
  • Louder RK [173]
  • Cheng Y [165]
  • Park G [164]
  • Wang F [164]
  • Egelman EH [163]
  • Dong X [159]
  • Zhang J [141]
  • Zhao Y [140]
  • Wang C [138]
  • Frank J [137]
  • Wang J [137]
  • Su H [135]
  • Zhou L [135]
  • Nogales E [133]
  • Huang C [132]
  • Castro C [131]
  • Castro CE [131]
  • He Y [131]
  • Huang CM [131]
  • Marras A [131]
  • Marras AE [131]
  • Smith J [131]
  • Su HJ [131]
  • Huang W [130]
  • Zhang Z [128]
  • Doran MH [127]
  • Beneke T [126]
  • Fochler S [126]
  • Gluenz E [126]
  • Wheeler RJ [126]
  • Dominguez R [122]
  • Zeng J [122]
  • Buzovetsky O [121]
  • Niu Q [121]
  • Rabuck-gibbons JN [120]
  • Veesler D [118]
  • Zhang Y [118]
  • Kollman JM [117]
  • Agard DA [116]
  • Kossiakoff AA [116]
  • Darst SA [115]
  • Zhang X [115]
  • Chai P [114]
  • Li X [112]
  • Yang J [109]
  • Korostelev AA [108]
  • Hite RK [105]
  • Liu H [103]
  • Lander GC [100]
  • Sun C [97]
  • Li Z [95]
  • Carragher B [94]
  • Chen J [94]
  • Potter CS [94]
  • Taylor DW [94]
  • Liu Y [93]
  • Mckenna R [93]
  • Wang L [93]
  • Chipman P [91]
  • Murakami K [91]
  • Wang H [91]
  • Chen Z [90]
  • Yu Z [90]
  • Davis JH [88]
  • Han GW [87]
  • Karakas E [87]
  • Du J [86]
  • Fort C [86]
  • Schmid MF [86]
  • Walker BJ [86]
  • Kaelber JT [84]
  • Anderson JR [83]
  • Li Q [83]
  • Marmorstein R [83]

Author by ORCID

  • Ren G [783]
  • Liu J [691]
  • Brown A [242]
  • Zhou ZH [231]
  • Lyumkis D [213]
  • Chiu W [188]
  • Andersen ES [186]
  • Geary C [186]
  • Klinge S [183]
  • Zhang M [170]
  • Williamson JR [162]
  • Lei D [162]
  • Cheng Y [157]
  • Zhou L [131]
  • Castro CE [131]
  • Marras AE [131]
  • Su HJ [131]
  • Zhang R [131]
  • Doran MH [126]
  • Beneke T [125]
  • Wheeler RJ [125]
  • Gluenz E [125]
  • Fochler S [125]
  • Zeng J [121]
  • Niu Q [120]
  • Dominguez R [116]
  • Korostelev AA [102]
  • Egelman EH [101]
  • Hite RK [99]
  • Huang W [98]
  • Agard DA [97]
  • Wang F [92]
  • Chipman P [87]
  • Sun C [86]
  • Li H [86]
  • Kollman JM [85]
  • Fort C [85]
  • Zhang K [82]
  • Nogales E [82]
  • Taylor DW [82]
  • Darst SA [81]
  • Lei M [80]
  • Frank J [79]
  • Leung MR [79]
  • Kossiakoff AA [79]
  • Yang J [78]
  • Chai P [78]
  • Mckenna R [78]
  • Demo G [78]
  • Du J [78]
  • Davis JH [77]
  • Park YJ [77]
  • Aricescu AR [77]
  • Zeev-ben-mordehai T [76]
  • Noteborn WEM [76]
  • Lishko PV [75]
  • Marmorstein R [75]
  • Karakas E [74]
  • Kaelber JT [74]
  • Bai XC [74]
  • Palmer NJ [74]
  • Fromme JC [73]
  • Kwong PD [73]
  • Lander GC [73]
  • Kreutzberger MAB [72]
  • Pestova TV [71]
  • Walls AC [70]
  • Li X [69]
  • Leschziner AE [69]
  • Li H [69]
  • Rice WJ [68]
  • Schmid MF [67]
  • Frost A [67]
  • Molodtsov V [65]
  • Li N [65]
  • Veesler D [64]
  • Barrie KR [64]
  • Ebright RH [63]
  • Mietzsch M [62]
  • Malinauskas T [62]
  • Murakami K [61]
  • Lu W [61]
  • Hellen CUT [61]
  • Das R [60]
  • Han Y [60]
  • Gorman J [59]
  • Rebowski G [58]
  • Chen M [58]
  • Gati C [58]
  • He Y [57]
  • Ludtke SJ [57]
  • Tang Q [57]
  • Louder RK [57]
  • Nicastro D [56]
  • He Y [56]
  • Brown ZP [56]
  • Baker D [54]
  • Boczkowska M [54]
  • Schultz K [53]
  • Gagnon MG [53]

Journal

  • NAT COMMUN [2047]
  • TO BE PUBLISHED [1219]
  • NATURE [1141]
  • NAT STRUCT MOL BIOL [797]
  • BIORXIV [772]
  • PNAS [669]
  • SCI ADV [485]
  • SCIENCE [438]
  • ELIFE [422]
  • CELL [381]
  • MOL CELL [311]
  • STRUCTURE [232]
  • NUCLEIC ACIDS RES [184]
  • EMBO J [144]
  • CELL REP [118]
  • NAT CHEM BIOL [111]
  • SCI REP [102]
  • J MOL BIOL [94]
  • J BIOL CHEM [93]
  • NAT METHODS [86]
  • J VIROL [82]
  • ACTA CRYSTALLOGR D STRUCT BIOL [69]
  • CELL RES [59]
  • COMMUN BIOL [52]
  • BIOCHEMISTRY [51]
  • J CELL BIOL [51]
  • J STRUCT BIOL X [44]
  • J STRUCT BIOL [42]
  • PLOS PATHOG [42]
  • NAT MICROBIOL [37]
  • VIRUSES [35]
  • BIOCHIM BIOPHYS ACTA MOL CELL BIOL LIPIDS [31]
  • MBIO [30]
  • J AM CHEM SOC [29]
  • PROTEIN SCI [26]
  • CELL HOST MICROBE [24]
  • NAT NANOTECHNOL [22]
  • INT J MOL SCI [21]
  • ACS CENT SCI [20]
  • MOL BIOL CELL [20]
  • LIFE SCI ALLIANCE [18]
  • NEURON [18]
  • BLOOD [17]
  • J BACTERIOL [17]
  • IUCRJ [16]
  • RES SQ [16]
  • CELL DISCOV [15]
  • NAT CATAL [14]
  • DEV CELL [13]
  • J GEN VIROL [13]
  • MOL BRAIN [13]
  • RNA [13]
  • GENES DEV [12]
  • J LIPID RES [12]
  • PLOS BIOL [11]
  • CURR BIOL [10]
  • IMMUNITY [10]
  • ACS NANO [9]
  • ISCIENCE [9]
  • NAT PLANTS [8]
  • ADV SCI [7]
  • ANGEW CHEM INT ED ENGL [7]
  • CELL METAB. [7]
  • J EXP MED [7]
  • MOL THER METHODS CLIN DEV [7]
  • MOL.CELL PROTEOMICS [7]
  • ACTA NEUROPATHOL [6]
  • BIOMOLECULES [6]
  • BIOPHYS J [6]
  • CELL CHEM BIOL [6]
  • EMBO REP [6]
  • PNAS NEXUS [6]
  • PROTEOMICS [6]
  • BIOCHIM BIOPHYS ACTA MOL CELL RES [5]
  • INT J BIOL MACROMOL [5]
  • NAT BIOTECHNOL [5]
  • PROTEIN CELL [5]
  • VIROLOGY [5]
  • BIOMACROMOLECULES [4]
  • CELL MICROBIOL [4]
  • CHEM SCI [4]
  • J CELL SCI [4]
  • NANOSCALE [4]
  • NAT CARDIOVASC RES [4]
  • NAT MED [4]
  • NAT PROTOC [4]
  • NPJ DRUG DISCOV [4]
  • SCI TRANSL MED [4]
  • ACS CHEM BIOL [3]
  • ACS MACRO LETT [3]
  • ADV MATER [3]
  • BIOCHEM J [3]
  • CELL REP PHYS SCI [3]
  • CHEMISTRY [3]
  • FASEB J [3]
  • HELIYON [3]
  • J COMPUT CHEM [3]
  • MATTER [3]
  • PLANT CELL [3]
  • PLOS ONE [3]

Software

  • CRYOSPARC [3686]
  • RELION [2313]
  • CTFFIND [568]
  • GCTF [542]
  • IPET [421]
  • TOMOCTF [372]
  • FREALIGN [178]
  • PHENIX [167]
  • CISTEM [147]
  • IMOD [131]
  • COOT [113]
  • EMAN2 [96]
  • UCSF CHIMERAX [90]
  • WARP [83]
  • UCSF CHIMERA [63]
  • EMAN [50]
  • SPIDER [46]
  • AIMLESS [30]
  • DYNAMO [30]
  • PEET [30]
  • CRYOLO [28]
  • MATLAB [26]
  • TOMO3D [26]
  • CRYODRGN [23]
  • ETOMO [22]
  • APPION [21]
  • XMIPP [20]
  • CTFFIND3 [19]
  • CTFTILT [18]
  • AUTO3DEM [17]
  • JSPR [12]
  • EMCLARITY [8]
  • EMIRA [8]
  • ISOLDE [7]
  • PHASER [7]
  • XSCALE [7]
  • AV3 [6]
  • IHRSR [6]
  • REFMAC [6]
  • SPARX [6]
  • SPHIRE [6]
  • XDS [6]
  • EMREADY [5]
  • MOTIONCORR2 [5]
  • CTFFIND4 [4]
  • I3 [4]
  • PYTOM [4]
  • TOM TOOLBOX [4]
  • BSOFT [3]
  • FREALIX [3]
  • IMIRS [3]
  • MPSA [3]
  • NOVACTF [3]
  • SERIALEM [3]
  • TOMOALIGN [3]
  • ACE [2]
  • CTFPHASEFLIP [2]
  • DEEPEMHANCER [2]
  • EAMN [2]
  • EPU [2]
  • GCTF/RELION [2]
  • MOLREP [2]
  • SPARX/EMAN2 [2]
  • STOPGAP [2]
  • 3DMOD [1]
  • ACE, CTFFIND3 [1]
  • APPION HELIX BOXER [1]
  • CFTFIND [1]
  • CRYOSP [1]
  • DIALS [1]
  • E2CTF.PY [1]
  • ELITE3D [1]
  • EMAN BOXER [1]
  • EMAN, JSPR [1]
  • FREALIGNX [1]
  • GERELION [1]
  • IHRSH [1]
  • IMAGIC [1]
  • LEGINON [1]
  • M [1]
  • MATLAB SCRIPTS [1]
  • PHENIX.REFINE [1]
  • POINTLESS [1]
  • PROTOMO [1]
  • REION [1]
  • RELION2.1 [1]
  • ROSETTA [1]
  • RSREF [1]
  • SCIPION [1]
  • SPDER [1]
  • THUNDER [1]

Microscope

  • FEI TITAN KRIOS [5482]
  • TFS KRIOS [3099]
  • FEI TALOS ARCTICA [718]
  • TFS GLACIOS [353]
  • ZEISS LIBRA120PLUS [294]
  • FEI POLARA 300 [136]
  • FEI TECNAI F30 [120]
  • FEI TITAN [115]
  • FEI TECNAI F20 [91]
  • TFS TALOS [61]
  • FEI TECNAI ARCTICA [53]
  • FEI TECNAI 12 [37]
  • JEOL 3200FSC [33]
  • JEOL 2200FS [25]
  • JEOL 3200FS [16]
  • FEI TECNAI 20 [13]
  • JEOL CRYO ARM 300 [12]
  • JEOL 2100F [7]
  • FEI TECNAI SPIRIT [6]
  • JEOL 2100 [6]
  • TFS TALOS F200C [3]
  • TFS TITAN THEMIS [3]
  • FEI/PHILIPS CM10 [2]
  • FEI/PHILIPS CM120T [2]
  • FEI TECNAI SPHERA [1]
  • JEOL 1400 [1]
  • TFS TUNDRA [1]

Electron Source

  • FIELD EMISSION GUN [10301]
  • LAB6 [340]
  • OTHER [35]

Film or detector model

  • GATAN K3 6K X 4K [3599]
  • GATAN K3 BIOQUANTUM 6K X 4K [2634]
  • GATAN K2 SUMMIT 4K X 4K [2283]
  • FEI FALCON IV 4K X 4K [723]
  • GATAN ULTRASCAN 4000 4K X 4K [343]
  • TFS FALCON 4I 4K X 4K [293]
  • GATAN K2 QUANTUM 4K X 4K [208]
  • FEI FALCON III 4K X 4K [195]
  • GATAN K3 BIOCONTINUUM 6K X 4K [103]
  • FEI FALCON II 4K X 4K [76]
  • DIRECT ELECTRON DE-20 5K X 3K [46]
  • FEI CETA 4K X 4K [36]
  • GATAN K2 BASE 4K X 4K [33]
  • OTHER [28]
  • TVIPS TEMCAM-F416 4K X 4K [23]
  • DIRECT ELECTRON DE-64 8K X 8K [21]
  • GATAN ULTRASCAN 1000 2K X 2K [11]
  • TVIPS TEMCAM-F216 2K X 2K [8]
  • DIRECT ELECTRON APOLLO 4K X 4K [6]
  • DIRECT ELECTRON DE-16 4K X 4K [6]
  • FEI EAGLE 4K X 4K [5]
  • FEI FALCON I 4K X 4K [5]
  • AGFA SCIENTA FILM [4]
  • DIRECT ELECTRON DE-10 5K X 4K [4]
  • GATAN MULTISCAN [4]
  • KODAK SO-163 FILM [4]
  • DIRECT ELECTRON DE-12 4K X 3K [3]
  • TVIPS TEMCAM-F224 2K X 2K [3]
  • GATAN K2 4K X 4K [1]
  • GATAN K2 IS 4K X 4K [1]
  • GATAN ULTRASCAN 10000 10K X 10K [1]
  • TVIPS TEMCAM-F415 4K X 4K [1]

External links

  • PDB [10186]
  • UniProt [6021]
  • PDBe-Kb [5552]
  • AlphaFold DB [5374]
  • Gene Ontology [4608]
  • InterPro [4603]
  • Pfam [4343]
  • ChEBI [3614]
  • ChEMBL [3260]
  • DrugBank [3201]
  • Complex Portal [1664]
  • EMPIAR [1358]
  • SCOP2 [98]
  • CATH [81]