Electron Microscopy Data Bank

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grant_funding_details:"National Institutes of Health/National Institute of Diabetes and Digestive and Kidney Disease (NIH/NIDDK)"

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Current Database

Current status

Sample type

Organism

Synthetic construct [548]
Homo sapiens [319]
Mus musculus [124]
Rattus norvegicus [35]
Escherichia coli [28]
Xenopus laevis [28]
Geobacillus stearothermophilus [24]
Cricetus cricetus [18]
Saccharomyces cerevisiae [9]
Thermothelomyces thermophilus [9]
Escherichia coli [9]
Bos taurus [9]
Pseudomonas virus pa223 [8]
Human immunodeficiency virus 1 [7]
Staphylococcus aureus [7]
Sus scrofa [5]
Mesocricetus auratus [4]
Adeno-associated dependoparvovirus a [4]
Legionella pneumophila [4]
Vibrio cholerae [4]
Gallus gallus [4]
Human immunodeficiency virus [3]
Lactobacillus acidophilus [3]
Helicobacter pylori [3]
Lama glama [3]
Hepacivirus c [2]
Cupriavidus metallidurans [2]
Carlito syrichta [2]
Methylococcus capsulatus [2]
Methylococcus capsulatus [2]
Saccharomyces cerevisiae [2]
Myotis lucifugus [2]
Trichoplusia ni [2]
Musca domestica [2]
Equus caballus [2]
Photorhabdus khanii [1]
Methylococcus capsulatus [1]
Vibrio parahaemolyticus [1]
Vibrio cholerae [1]
Fish lymphocystis disease virus [1]
Arabidopsis thaliana [1]
Enterovirus a [1]
(no species) [1]
(no species) [1]
Spodoptera frugiperda [1]
Phage #d [1]
Helicobacter pylori [1]
Oryctolagus cuniculus [1]

EM Method

Resolution

Model molecular weight

Release Date

Author by name

Liu J [567]
Ren G [558]
Zhang M [542]
Hu Z [345]
Gang O [343]
Wang S [343]
Wu H [343]
Andersen ES [186]
Geary C [186]
Mcrae EKS [186]
Yang W [116]
Gellert M [80]
Li J [63]
Liu L [61]
Chen X [57]
Wang H [51]
Cisneros-aguirre M [48]
Merkell A [48]
Stark JM [48]
Hinshaw JE [39]
Bennett CF [36]
Burger N [36]
Djurabekova A [36]
Gygi SP [36]
Latorre-muro P [36]
Liao M [36]
Paulo JA [36]
Puigserver P [36]
Sharma V [36]
Shin Y-C [36]
Shin YC [36]
Song K [36]
Xu C [36]
Zdorevskyi O [36]
Mohammed BM [33]
Roth BL [31]
Gumpper RH [27]
Zhang J [27]
Bustamante C [26]
Canari-chumpitaz C [26]
Diaz-celis C [26]
Kim J [26]
Li CL [26]
Nogales E [26]
Onoa B [26]
Requejo KI [26]
Shyng SL [26]
Vien M [26]
Wang DN [26]
Canagarajah B [25]
Bhoge BA [24]
Degenhardt MFS [24]
Lee Y-T [24]
Liu Y [24]
Skeparnias I [24]
Stagno JR [24]
Stanton AE [24]
Strub MP [24]
Wang Y-X [24]
Cao C [23]
Nyenhuis SB [23]
Skiniotis G [23]
Ali I [22]
Ananda VY [22]
Chan DC [22]
Chao LH [22]
Cui Y [22]
Fry MY [22]
Ge Y [22]
Ha LL [22]
Hakim P [22]
Inde Z [22]
Kleinstiver BP [22]
Krumm BE [22]
Landoni JC [22]
Luce BE [22]
Lugo CM [22]
Mcdonald JL [22]
Navarro PP [22]
Qin X [22]
Rath S [22]
Sarosiek KA [22]
Zhang S [22]
Li Y [21]
Fay JF [20]
He F [20]
Sung MW [20]
Basore K [19]
Di Cera E [19]
Driggers CM [19]
Gao Y [19]
Gu TJ [19]
Li L [19]
Marden JJ [19]
Mathiesen JM [19]
Papasergi-scott MM [19]
Rahman SN [19]
Robertson MJ [19]
Seven AB [19]
Wu C [19]

Author by ORCID

Liu J [532]
Ren G [532]
Andersen ES [186]
Geary C [186]
Zhang M [173]
Yang W [95]
Gellert M [65]
Li J [56]
Liu L [48]
Stark JM [48]
Chen X [34]
Mohammed BM [33]
Vien M [26]
Wang DN [26]
Ren G [26]
Canari-chumpitaz C [26]
Requejo KI [26]
Roth BL [25]
Zhang J [24]
Stagno JR [24]
Degenhardt MFS [24]
Inde Z [22]
Ge Y [22]
Chan DC [22]
Landoni JC [22]
Nyenhuis SB [22]
Mcdonald JL [22]
Sarosiek KA [22]
Chao LH [22]
Hinshaw JE [22]
Hakim P [22]
Skiniotis G [22]
Ali I [22]
Qin X [22]
Ha LL [22]
Lugo CM [22]
Cao C [21]
Krumm BE [20]
Driggers CM [19]
He F [19]
Gu TJ [19]
Gao Y [19]
Li L [19]
Rahman SN [19]
Robertson MJ [19]
Papasergi-scott MM [19]
Mathiesen JM [19]
Zaoralova M [19]
Jiang J [17]
Syed ZA [17]
Baena V [17]
Liu Y [17]
Fay JF [17]
Rasmussen HO [16]
Mcrae EKS [16]
Buchanan SK [16]
Zhang S [16]
Boesen T [16]
Botos I [16]
Pedersen JS [16]
Boggild A [16]
Jimah JR [16]
Nguyen MTA [16]
Zuckerman DM [15]
Russo JD [15]
Shyng SL [15]
Kim J [14]
Lee YT [14]
Wang YX [14]
Basore K [13]
Zhou M [13]
Cui Y [13]
Di Cera E [13]
Guo Y [12]
Neubert TA [12]
Cerutti G [12]
Erdjument-bromage H [12]
Kim Y [12]
Katsamba PS [12]
Karakas E [11]
Rice WJ [11]
Shoichet BK [11]
Mindell JA [11]
Wang L [11]
Bhoge BA [10]
Lee Y-T [10]
Sauer DB [10]
Doyle MT [10]
Wang Y-X [10]
Takahashi H [10]
Pommier Y [10]
Yang X [10]
Skeparnias I [10]
Ohlemacher SI [10]
Li CL [10]
Diederichs KA [9]
Celia H [9]
Yang W [9]
Sumner CJ [8]
Im W [8]

Journal

Software

Microscope

Electron Source

Film or detector model

External links

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Showing 1 - 10 of 1127. Page 1 of 113

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EMD-48929

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Structure of VcINDY-alpha ketoglutarate complex in Ci-Ci conformation

CryoEM

Release date: July 29, 2026
Resolution: 2.35 Å
EM Method: Single-particle
Fitted PDBs: 9n5n

Q-score: 0.624
Similar entry percentile: 76%

Li Y, Daab A, Song JM, Marden JJ, Mulligan C, Wang DN

To Be Published

EMD-58071

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Structure of the NaCT-Na-PF2 complex

CryoEM

Release date: July 29, 2026
Resolution: 2.53 Å
EM Method: Single-particle
Fitted PDBs: 30ut

Q-score: 0.512
Similar entry percentile: 32%

Sauer DB, Song J, Marden JJ, Wang B, Sowerby K, Sudar JC, Rice WJ, Wang DN

bioRxiv (2026) [ DOI: doi:10.64898/2026.07.08.737274 Pubmed: 42465234 ]

EMD-58072

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Structure of NaCT in NaCl

CryoEM

Release date: July 29, 2026
Resolution: 2.51 Å
EM Method: Single-particle
Fitted PDBs: 30uu

Q-score: 0.422
Similar entry percentile: 8%

Sauer DB, Song J, Marden JJ, Wang B, Sowerby K, Sudar JC, Rice WJ, Wang DN

bioRxiv (2026) [ DOI: doi:10.64898/2026.07.08.737274 Pubmed: 42465234 ]

EMD-58073

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Structure of NaCT in Choline Chloride

CryoEM

Release date: July 29, 2026
Resolution: 2.49 Å
EM Method: Single-particle
Fitted PDBs: 30uv

Q-score: 0.501
Similar entry percentile: 23%

Sauer DB, Song J, Marden JJ, Wang B, Sowerby K, Sudar JC, Rice WJ, Wang DN

bioRxiv (2026) [ DOI: doi:10.64898/2026.07.08.737274 Pubmed: 42465234 ]

EMD-70938

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Structure of Geobacillus stearothermophilus RNase P ribozyme in complex with precursor tRNA with non-complementary 5 leader sub-conformation 1 of tRNA anticodon arm tilted

CryoEM

Release date: June 10, 2026
Resolution: 2.93 Å
EM Method: Single-particle
Fitted PDBs: 9owo

Q-score: 0.429
Similar entry percentile: 20%

Lee Y-T, Degenhardt MFS, Skeparnias I, Chen S-Y, Bhoge BA, Zhang J, Stagno JR, Wang Y-X

To Be Published

EMD-70939

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Structure of Geobacillus stearothermophilus RNase P ribozyme in complex with precursor tRNA with non-complementary 5 leader sub-conformation 2 of tRNA anticodon arm tilted

CryoEM

Release date: June 10, 2026
Resolution: 2.94 Å
EM Method: Single-particle
Fitted PDBs: 9owp

Q-score: 0.427
Similar entry percentile: 20%

Lee Y-T, Degenhardt MFS, Skeparnias I, Chen S-Y, Bhoge BA, Zhang J, Stagno JR, Wang Y-X

To Be Published

EMD-70942

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Structure of Geobacillus stearothermophilus RNase P holoenzyme in 5 mM Mg2

CryoEM

Release date: June 10, 2026
Resolution: 2.87 Å
EM Method: Single-particle
Fitted PDBs: 9ows

Q-score: 0.394
Similar entry percentile: 11%

Lee Y-T, Degenhardt MFS, Skeparnias I, Chen S-Y, Bhoge BA, Zhang J, Stagno JR, Wang Y-X

To Be Published

EMD-70943

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Structure of Geobacillus stearothermophilus RNase P holoenzyme in complex with precursor tRNA in 5 mM Ca2

CryoEM

Release date: June 10, 2026
Resolution: 2.82 Å
EM Method: Single-particle
Fitted PDBs: 9owt

Q-score: 0.446
Similar entry percentile: 22%

Lee Y-T, Degenhardt MFS, Skeparnias I, Chen S-Y, Bhoge BA, Zhang J, Stagno JR, Wang Y-X

To Be Published

EMD-70944

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Structure of Geobacillus stearothermophilus RNase P holoenzyme in complex with precursor tRNA in 1 mM Ca2

CryoEM

Release date: June 10, 2026
Resolution: 2.93 Å
EM Method: Single-particle
Fitted PDBs: 9owu

Q-score: 0.402
Similar entry percentile: 14%

Lee Y-T, Degenhardt MFS, Skeparnias I, Chen S-Y, Bhoge BA, Zhang J, Stagno JR, Wang Y-X

To Be Published

EMD-70945

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Structure of Geobacillus stearothermophilus RNase P holoenzyme in complex with mature tRNA in 5 mM Ca2

CryoEM

Release date: June 10, 2026
Resolution: 3.02 Å
EM Method: Single-particle
Fitted PDBs: 9owv

Q-score: 0.389
Similar entry percentile: 13%

Lee Y-T, Degenhardt MFS, Skeparnias I, Chen S-Y, Bhoge BA, Zhang J, Stagno JR, Wang Y-X

To Be Published

Sort by: Download

Showing 1 - 10 of 1127. Page 1 of 113

Display:

Statistics

Filter By

Current Database

Current status

Sample type

Organism

Synthetic construct [548]
Homo sapiens [319]
Mus musculus [124]
Rattus norvegicus [35]
Escherichia coli [28]
Xenopus laevis [28]
Geobacillus stearothermophilus [24]
Cricetus cricetus [18]
Saccharomyces cerevisiae [9]
Thermothelomyces thermophilus [9]
Escherichia coli [9]
Bos taurus [9]
Pseudomonas virus pa223 [8]
Human immunodeficiency virus 1 [7]
Staphylococcus aureus [7]
Sus scrofa [5]
Mesocricetus auratus [4]
Adeno-associated dependoparvovirus a [4]
Legionella pneumophila [4]
Vibrio cholerae [4]
Gallus gallus [4]
Human immunodeficiency virus [3]
Lactobacillus acidophilus [3]
Helicobacter pylori [3]
Lama glama [3]
Hepacivirus c [2]
Cupriavidus metallidurans [2]
Carlito syrichta [2]
Methylococcus capsulatus [2]
Methylococcus capsulatus [2]
Saccharomyces cerevisiae [2]
Myotis lucifugus [2]
Trichoplusia ni [2]
Musca domestica [2]
Equus caballus [2]
Photorhabdus khanii [1]
Methylococcus capsulatus [1]
Vibrio parahaemolyticus [1]
Vibrio cholerae [1]
Fish lymphocystis disease virus [1]
Arabidopsis thaliana [1]
Enterovirus a [1]
(no species) [1]
(no species) [1]
Spodoptera frugiperda [1]
Phage #d [1]
Helicobacter pylori [1]
Oryctolagus cuniculus [1]

EM Method

Resolution

Model molecular weight

Release Date

Author by name

Liu J [567]
Ren G [558]
Zhang M [542]
Hu Z [345]
Gang O [343]
Wang S [343]
Wu H [343]
Andersen ES [186]
Geary C [186]
Mcrae EKS [186]
Yang W [116]
Gellert M [80]
Li J [63]
Liu L [61]
Chen X [57]
Wang H [51]
Cisneros-aguirre M [48]
Merkell A [48]
Stark JM [48]
Hinshaw JE [39]
Bennett CF [36]
Burger N [36]
Djurabekova A [36]
Gygi SP [36]
Latorre-muro P [36]
Liao M [36]
Paulo JA [36]
Puigserver P [36]
Sharma V [36]
Shin Y-C [36]
Shin YC [36]
Song K [36]
Xu C [36]
Zdorevskyi O [36]
Mohammed BM [33]
Roth BL [31]
Gumpper RH [27]
Zhang J [27]
Bustamante C [26]
Canari-chumpitaz C [26]
Diaz-celis C [26]
Kim J [26]
Li CL [26]
Nogales E [26]
Onoa B [26]
Requejo KI [26]
Shyng SL [26]
Vien M [26]
Wang DN [26]
Canagarajah B [25]
Bhoge BA [24]
Degenhardt MFS [24]
Lee Y-T [24]
Liu Y [24]
Skeparnias I [24]
Stagno JR [24]
Stanton AE [24]
Strub MP [24]
Wang Y-X [24]
Cao C [23]
Nyenhuis SB [23]
Skiniotis G [23]
Ali I [22]
Ananda VY [22]
Chan DC [22]
Chao LH [22]
Cui Y [22]
Fry MY [22]
Ge Y [22]
Ha LL [22]
Hakim P [22]
Inde Z [22]
Kleinstiver BP [22]
Krumm BE [22]
Landoni JC [22]
Luce BE [22]
Lugo CM [22]
Mcdonald JL [22]
Navarro PP [22]
Qin X [22]
Rath S [22]
Sarosiek KA [22]
Zhang S [22]
Li Y [21]
Fay JF [20]
He F [20]
Sung MW [20]
Basore K [19]
Di Cera E [19]
Driggers CM [19]
Gao Y [19]
Gu TJ [19]
Li L [19]
Marden JJ [19]
Mathiesen JM [19]
Papasergi-scott MM [19]
Rahman SN [19]
Robertson MJ [19]
Seven AB [19]
Wu C [19]

Author by ORCID

Liu J [532]
Ren G [532]
Andersen ES [186]
Geary C [186]
Zhang M [173]
Yang W [95]
Gellert M [65]
Li J [56]
Liu L [48]
Stark JM [48]
Chen X [34]
Mohammed BM [33]
Vien M [26]
Wang DN [26]
Ren G [26]
Canari-chumpitaz C [26]
Requejo KI [26]
Roth BL [25]
Zhang J [24]
Stagno JR [24]
Degenhardt MFS [24]
Inde Z [22]
Ge Y [22]
Chan DC [22]
Landoni JC [22]
Nyenhuis SB [22]
Mcdonald JL [22]
Sarosiek KA [22]
Chao LH [22]
Hinshaw JE [22]
Hakim P [22]
Skiniotis G [22]
Ali I [22]
Qin X [22]
Ha LL [22]
Lugo CM [22]
Cao C [21]
Krumm BE [20]
Driggers CM [19]
He F [19]
Gu TJ [19]
Gao Y [19]
Li L [19]
Rahman SN [19]
Robertson MJ [19]
Papasergi-scott MM [19]
Mathiesen JM [19]
Zaoralova M [19]
Jiang J [17]
Syed ZA [17]
Baena V [17]
Liu Y [17]
Fay JF [17]
Rasmussen HO [16]
Mcrae EKS [16]
Buchanan SK [16]
Zhang S [16]
Boesen T [16]
Botos I [16]
Pedersen JS [16]
Boggild A [16]
Jimah JR [16]
Nguyen MTA [16]
Zuckerman DM [15]
Russo JD [15]
Shyng SL [15]
Kim J [14]
Lee YT [14]
Wang YX [14]
Basore K [13]
Zhou M [13]
Cui Y [13]
Di Cera E [13]
Guo Y [12]
Neubert TA [12]
Cerutti G [12]
Erdjument-bromage H [12]
Kim Y [12]
Katsamba PS [12]
Karakas E [11]
Rice WJ [11]
Shoichet BK [11]
Mindell JA [11]
Wang L [11]
Bhoge BA [10]
Lee Y-T [10]
Sauer DB [10]
Doyle MT [10]
Wang Y-X [10]
Takahashi H [10]
Pommier Y [10]
Yang X [10]
Skeparnias I [10]
Ohlemacher SI [10]
Li CL [10]
Diederichs KA [9]
Celia H [9]
Yang W [9]
Sumner CJ [8]
Im W [8]

Journal

Software

Microscope

Electron Source

Film or detector model

External links