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grant_code:"S10OD021741"

Filter By

Current Database

  • EMDB [61]

Current status

  • REL [61]

Sample type

  • Complex [57]
  • Protein [46]
  • Ligand [36]
  • RNA [12]
  • Cell [4]

Organism

  • Homo sapiens [31]
  • Mus musculus [12]
  • Escherichia coli [10]
  • Sus scrofa [8]
  • Severe acute respiratory syndrome coronavirus [6]
  • Saccharomyces cerevisiae [4]
  • Parus major [4]
  • Oryctolagus cuniculus [4]
  • Chaetomium thermophilum [3]
  • Bos taurus [1]

EM Method

  • Single-particle [57]
  • Helical reconstruction [4]

Resolution

  • < 2Å [1]
  • ≥ 2Å and < 3Å [19]
  • ≥ 3Å and < 4Å [32]
  • ≥ 6Å and < 8Å [2]
  • ≥ 8Å and < 12Å [7]

Model molecular weight

  • 100-250 kDa [20]
  • 250-500 kDa [9]
  • 500-1000 kDa [9]
  • 1-2 MDa [2]
  • 2-5 MDa [5]

Release Date

  • 2024 [7]
  • 2022 [5]
  • 2021 [16]
  • 2020 [18]
  • 2019 [12]
  • 2018 [1]
  • 2017 [2]

Author by name

  • Cheng Y [43]
  • Asarnow D [23]
  • Campbell MG [12]
  • Baron JL [10]
  • Bondesson AJ [10]
  • Cormier A [10]
  • Ito S [10]
  • Julius D [10]
  • Lou J [10]
  • Marks JD [10]
  • Nishimura SL [10]
  • Seed RI [10]
  • Dang S [8]
  • Ansel KM [7]
  • Borah A [7]
  • Bulkley D [7]
  • Carpenter C [7]
  • Fish L [7]
  • Gilbert LA [7]
  • Goodarzi H [7]
  • Goudreau J [7]
  • Khoroshkin M [7]
  • Navickas A [7]
  • Palka C [7]
  • Winters A [7]
  • Yousefi K [7]
  • Yu J [7]
  • Zhou S [7]
  • Zhou SK [7]
  • Ary B [6]
  • Bohn M [6]
  • Chan CEZ [6]
  • Connelly E [6]
  • Craik CS [6]
  • Faust B [6]
  • Hanson BJ [6]
  • Hu Y [6]
  • Huang CW [6]
  • Lee CY [6]
  • Lee WH [6]
  • Manglik A [6]
  • Maurer-stroh S [6]
  • Minhat RA [6]
  • Myasnikov AG [6]
  • Ng PML [6]
  • Ngoh EZX [6]
  • Pizzorno A [6]
  • Renia L [6]
  • Rosa-calatrava M [6]
  • Seah SGK [6]
  • Soh MK [6]
  • Tan HC [6]
  • Teo FJ [6]
  • Terrier O [6]
  • Wang B [6]
  • Wang CI [6]
  • Yeap YYC [6]
  • Young NJ [6]
  • Agard DA [5]
  • Asarnow DE [5]
  • Beachy PA [5]
  • Fraser JS [5]
  • Frost A [5]
  • Fujimori DG [5]
  • Klepacki D [5]
  • Lee DJ [5]
  • Mankin AS [5]
  • Sharma A [5]
  • Stojkovic V [5]
  • Sun M [5]
  • Szal T [5]
  • Tsai K [5]
  • Vazquez-laslop N [5]
  • Walter P [5]
  • Wang L [5]
  • Young ID [5]
  • Zhang Y [5]
  • Cheng T [4]
  • Ding K [4]
  • Diver MM [4]
  • Elnatan D [4]
  • Feng S [4]
  • Han TW [4]
  • Hatakeyama J [4]
  • Iwasa JH [4]
  • Jan LY [4]
  • Jan YN [4]
  • Jin P [4]
  • Li J [4]
  • Liu YX [4]
  • Ma Y [4]
  • Mann RK [4]
  • Mccullough J [4]
  • Moss 3Rd Fr [4]
  • Nguyen HC [4]
  • Sundquist WI [4]
  • Talledge N [4]
  • Vershinin MD [4]
  • Wang Q [4]
  • Wang Y [4]

Author by ORCID

  • Cheng Y [38]
  • Campbell MG [12]
  • Lou J [10]
  • Cormier A [10]
  • Seed RI [10]
  • Nishimura SL [10]
  • Baron JL [10]
  • Dang S [8]
  • Gilbert LA [7]
  • Asarnow D [7]
  • Winters A [7]
  • Zhou SK [7]
  • Goodarzi H [7]
  • Yu J [7]
  • Navickas A [7]
  • Ansel KM [7]
  • Julius D [6]
  • Hu Y [5]
  • Terrier O [5]
  • Bohn M [5]
  • Mankin AS [5]
  • Fujimori DG [5]
  • Faust B [5]
  • Fraser JS [5]
  • Walter P [5]
  • Rosa-calatrava M [5]
  • Wang L [5]
  • Renia L [5]
  • Connelly E [5]
  • Maurer-stroh S [5]
  • Beachy PA [5]
  • Zhang Y [5]
  • Vazquez-laslop N [5]
  • Young ID [5]
  • Diver MM [4]
  • Mccullough J [4]
  • Asarnow DE [4]
  • Hatakeyama J [4]
  • Ding K [4]
  • Mann RK [4]
  • Van Der Wijst J [4]
  • Liu YX [4]
  • Talledge N [4]
  • Nguyen HC [4]
  • Moss 3Rd Fr [4]
  • Sharma A [4]
  • Van Goor Mk [4]
  • Frost A [4]
  • Wang Q [4]
  • Kokontis CY [2]
  • Bulkley DP [2]
  • Toutkoushian H [2]
  • Myasnikov AG [2]
  • Autzen HE [2]
  • Sharma A [1]
  • Agard DA [1]

Journal

  • CELL [17]
  • NAT STRUCT MOL BIOL [9]
  • NAT METHODS [7]
  • SCIENCE [6]
  • ELIFE [5]
  • PROTEIN SCI [5]
  • CELL REP [4]
  • NATURE [4]
  • PNAS [4]
  • TO BE PUBLISHED [4]
  • ACTA CRYSTALLOGR D STRUCT BIOL [2]
  • J STRUCT BIOL [1]

Software

  • CRYOSPARC [25]
  • RELION [15]
  • CISTEM [6]

Microscope

  • FEI TITAN KRIOS [56]
  • FEI POLARA 300 [2]
  • TFS GLACIOS [2]
  • FEI TECNAI F20 [1]

Electron Source

  • FIELD EMISSION GUN [61]

Film or detector model

  • GATAN K2 SUMMIT 4K X 4K [38]
  • GATAN K3 BIOQUANTUM 6K X 4K [16]
  • GATAN K3 6K X 4K [7]

External links

  • PDB [61]
  • AlphaFold DB [46]
  • PDBe-Kb [46]
  • UniProt [46]
  • Gene Ontology [45]
  • InterPro [45]
  • Pfam [41]
  • ChEBI [36]
  • DrugBank [31]
  • ChEMBL [28]
  • EMPIAR [25]
  • Complex Portal [11]
Sort by: Download
Showing 1 - 10 of 61. Page 1 of 7
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EMD-42275
Download Map
3D View
RORC mRNA 3 UTR riboswitch class A
CryoEM
Release date: Sept. 18, 2024
Resolution: 10.0 Å
EM Method: Single-particle

Khoroshkin M, Asarnow D, Zhou S, Navickas A, Winters A, Goudreau J, Zhou SK, Yu J, Palka C, Fish L, Borah A, Yousefi K, Carpenter C, Ansel KM, Cheng Y, Gilbert LA, Goodarzi H

Nat Methods (2024) [ Pubmed: 39014073 DOI: doi:10.1038/s41592-024-02335-1 ]

EMD-42276
Download Map
3D View
RORC mRNA 3 UTR riboswitch class B
CryoEM
Release date: Sept. 18, 2024
Resolution: 10.0 Å
EM Method: Single-particle

Khoroshkin M, Asarnow D, Zhou S, Navickas A, Winters A, Goudreau J, Zhou SK, Yu J, Palka C, Fish L, Borah A, Yousefi K, Carpenter C, Ansel KM, Cheng Y, Gilbert LA, Goodarzi H

Nat Methods (2024) [ Pubmed: 39014073 DOI: doi:10.1038/s41592-024-02335-1 ]

EMD-42277
Download Map
3D View
RORC mRNA 3 UTR riboswitch class C
CryoEM
Release date: Sept. 18, 2024
Resolution: 10.0 Å
EM Method: Single-particle

Khoroshkin M, Asarnow D, Zhou S, Navickas A, Winters A, Goudreau J, Zhou SK, Yu J, Palka C, Fish L, Borah A, Yousefi K, Carpenter C, Ansel KM, Cheng Y, Gilbert LA, Goodarzi H

Nat Methods (2024) [ Pubmed: 39014073 DOI: doi:10.1038/s41592-024-02335-1 ]

EMD-42400
Download Map
3D View
RORC mRNA 3 UTR riboswitch A97G/G98A mutant class C
CryoEM
Release date: July 31, 2024
Resolution: 9.9 Å
EM Method: Single-particle

Khoroshkin M, Asarnow D, Zhou S, Navickas A, Winters A, Goudreau J, Zhou SK, Yu J, Palka C, Fish L, Borah A, Yousefi K, Carpenter C, Ansel KM, Cheng Y, Gilbert LA, Goodarzi H

Nat Methods (2024) 21 pp. 1634-1645 [ Pubmed: 39014073 DOI: doi:10.1038/s41592-024-02335-1 ]

EMD-42401
Download Map
3D View
RORC mRNA 3 UTR riboswitch 77-GA mutant class A
CryoEM
Release date: July 31, 2024
Resolution: 10.1 Å
EM Method: Single-particle

Khoroshkin M, Asarnow D, Zhou S, Navickas A, Winters A, Goudreau J, Zhou SK, Yu J, Palka C, Fish L, Borah A, Yousefi K, Carpenter C, Ansel KM, Cheng Y, Gilbert LA, Goodarzi H

Nat Methods (2024) 21 pp. 1634-1645 [ Pubmed: 39014073 DOI: doi:10.1038/s41592-024-02335-1 ]

EMD-42403
Download Map
3D View
RORC mRNA 3 UTR riboswitch 117-AC mutant class C
CryoEM
Release date: July 31, 2024
Resolution: 9.9 Å
EM Method: Single-particle

Khoroshkin M, Asarnow D, Zhou S, Navickas A, Winters A, Goudreau J, Zhou SK, Yu J, Palka C, Fish L, Borah A, Yousefi K, Carpenter C, Ansel KM, Cheng Y, Gilbert LA, Goodarzi H

Nat Methods (2024) 21 pp. 1634-1645 [ Pubmed: 39014073 DOI: doi:10.1038/s41592-024-02335-1 ]

EMD-42404
Download Map
3D View
RORC mRNA 3 UTR riboswitch 117-AC mutant class B
CryoEM
Release date: July 31, 2024
Resolution: 10.2 Å
EM Method: Single-particle

Khoroshkin M, Asarnow D, Zhou S, Navickas A, Winters A, Goudreau J, Zhou SK, Yu J, Palka C, Fish L, Borah A, Yousefi K, Carpenter C, Ansel KM, Cheng Y, Gilbert LA, Goodarzi H

Nat Methods (2024) 21 pp. 1634-1645 [ Pubmed: 39014073 DOI: doi:10.1038/s41592-024-02335-1 ]

EMD-26674
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3D View
Human mitochondrial AAA protein ATAD1 with a catalytic dead mutation in complex with a peptide substrate closed conformation
CryoEM
Release date: June 15, 2022
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 7upr
Q-score: 0.444

Wang L, Toutkoushian H, Belyy V, Kokontis CY, Walter P

eLife (2022) 11 [ DOI: doi:10.7554/eLife.73941 Pubmed: 35550246 ]

EMD-26675
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3D View
Human mitochondrial AAA protein ATAD1 with a catalytic dead mutation in complex with a peptide substrate open conformation
CryoEM
Release date: June 15, 2022
Resolution: 3.5 Å
EM Method: Single-particle
Fitted PDBs: 7upt
Q-score: 0.404

Wang L, Toutkoushian H, Belyy V, Kokontis CY, Walter P

eLife (2022) 11 [ DOI: doi:10.7554/eLife.73941 Pubmed: 35550246 ]

EMD-24802
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3D View
Wild-type Escherichia coli stalled ribosome with antibiotic radezolid
CryoEM
Release date: March 2, 2022
Resolution: 2.48 Å
EM Method: Single-particle
Fitted PDBs: 7s1i
Q-score: 0.575

Tsai K, Stojkovic V, Lee DJ, Young ID, Szal T, Klepacki D, Vazquez-Laslop N, Mankin AS, Fraser JS, Fujimori DG

Nat Struct Mol Biol (2022) 29 pp. 162-171 [ DOI: doi:10.1038/s41594-022-00723-9 Pubmed: 35165456 ]

Sort by: Download
Showing 1 - 10 of 61. Page 1 of 7
Display:
Statistics
×

Download











































Preview first 10
Download

Filter By

Current Database

  • EMDB [61]

Current status

  • REL [61]

Sample type

  • Complex [57]
  • Protein [46]
  • Ligand [36]
  • RNA [12]
  • Cell [4]

Organism

  • Homo sapiens [31]
  • Mus musculus [12]
  • Escherichia coli [10]
  • Sus scrofa [8]
  • Severe acute respiratory syndrome coronavirus [6]
  • Saccharomyces cerevisiae [4]
  • Parus major [4]
  • Oryctolagus cuniculus [4]
  • Chaetomium thermophilum [3]
  • Bos taurus [1]

EM Method

  • Single-particle [57]
  • Helical reconstruction [4]

Resolution

  • < 2Å [1]
  • ≥ 2Å and < 3Å [19]
  • ≥ 3Å and < 4Å [32]
  • ≥ 6Å and < 8Å [2]
  • ≥ 8Å and < 12Å [7]

Model molecular weight

  • 100-250 kDa [20]
  • 250-500 kDa [9]
  • 500-1000 kDa [9]
  • 1-2 MDa [2]
  • 2-5 MDa [5]

Release Date

  • 2024 [7]
  • 2022 [5]
  • 2021 [16]
  • 2020 [18]
  • 2019 [12]
  • 2018 [1]
  • 2017 [2]

Author by name

  • Cheng Y [43]
  • Asarnow D [23]
  • Campbell MG [12]
  • Baron JL [10]
  • Bondesson AJ [10]
  • Cormier A [10]
  • Ito S [10]
  • Julius D [10]
  • Lou J [10]
  • Marks JD [10]
  • Nishimura SL [10]
  • Seed RI [10]
  • Dang S [8]
  • Ansel KM [7]
  • Borah A [7]
  • Bulkley D [7]
  • Carpenter C [7]
  • Fish L [7]
  • Gilbert LA [7]
  • Goodarzi H [7]
  • Goudreau J [7]
  • Khoroshkin M [7]
  • Navickas A [7]
  • Palka C [7]
  • Winters A [7]
  • Yousefi K [7]
  • Yu J [7]
  • Zhou S [7]
  • Zhou SK [7]
  • Ary B [6]
  • Bohn M [6]
  • Chan CEZ [6]
  • Connelly E [6]
  • Craik CS [6]
  • Faust B [6]
  • Hanson BJ [6]
  • Hu Y [6]
  • Huang CW [6]
  • Lee CY [6]
  • Lee WH [6]
  • Manglik A [6]
  • Maurer-stroh S [6]
  • Minhat RA [6]
  • Myasnikov AG [6]
  • Ng PML [6]
  • Ngoh EZX [6]
  • Pizzorno A [6]
  • Renia L [6]
  • Rosa-calatrava M [6]
  • Seah SGK [6]
  • Soh MK [6]
  • Tan HC [6]
  • Teo FJ [6]
  • Terrier O [6]
  • Wang B [6]
  • Wang CI [6]
  • Yeap YYC [6]
  • Young NJ [6]
  • Agard DA [5]
  • Asarnow DE [5]
  • Beachy PA [5]
  • Fraser JS [5]
  • Frost A [5]
  • Fujimori DG [5]
  • Klepacki D [5]
  • Lee DJ [5]
  • Mankin AS [5]
  • Sharma A [5]
  • Stojkovic V [5]
  • Sun M [5]
  • Szal T [5]
  • Tsai K [5]
  • Vazquez-laslop N [5]
  • Walter P [5]
  • Wang L [5]
  • Young ID [5]
  • Zhang Y [5]
  • Cheng T [4]
  • Ding K [4]
  • Diver MM [4]
  • Elnatan D [4]
  • Feng S [4]
  • Han TW [4]
  • Hatakeyama J [4]
  • Iwasa JH [4]
  • Jan LY [4]
  • Jan YN [4]
  • Jin P [4]
  • Li J [4]
  • Liu YX [4]
  • Ma Y [4]
  • Mann RK [4]
  • Mccullough J [4]
  • Moss 3Rd Fr [4]
  • Nguyen HC [4]
  • Sundquist WI [4]
  • Talledge N [4]
  • Vershinin MD [4]
  • Wang Q [4]
  • Wang Y [4]

Author by ORCID

  • Cheng Y [38]
  • Campbell MG [12]
  • Lou J [10]
  • Cormier A [10]
  • Seed RI [10]
  • Nishimura SL [10]
  • Baron JL [10]
  • Dang S [8]
  • Gilbert LA [7]
  • Asarnow D [7]
  • Winters A [7]
  • Zhou SK [7]
  • Goodarzi H [7]
  • Yu J [7]
  • Navickas A [7]
  • Ansel KM [7]
  • Julius D [6]
  • Hu Y [5]
  • Terrier O [5]
  • Bohn M [5]
  • Mankin AS [5]
  • Fujimori DG [5]
  • Faust B [5]
  • Fraser JS [5]
  • Walter P [5]
  • Rosa-calatrava M [5]
  • Wang L [5]
  • Renia L [5]
  • Connelly E [5]
  • Maurer-stroh S [5]
  • Beachy PA [5]
  • Zhang Y [5]
  • Vazquez-laslop N [5]
  • Young ID [5]
  • Diver MM [4]
  • Mccullough J [4]
  • Asarnow DE [4]
  • Hatakeyama J [4]
  • Ding K [4]
  • Mann RK [4]
  • Van Der Wijst J [4]
  • Liu YX [4]
  • Talledge N [4]
  • Nguyen HC [4]
  • Moss 3Rd Fr [4]
  • Sharma A [4]
  • Van Goor Mk [4]
  • Frost A [4]
  • Wang Q [4]
  • Kokontis CY [2]
  • Bulkley DP [2]
  • Toutkoushian H [2]
  • Myasnikov AG [2]
  • Autzen HE [2]
  • Sharma A [1]
  • Agard DA [1]

Journal

  • CELL [17]
  • NAT STRUCT MOL BIOL [9]
  • NAT METHODS [7]
  • SCIENCE [6]
  • ELIFE [5]
  • PROTEIN SCI [5]
  • CELL REP [4]
  • NATURE [4]
  • PNAS [4]
  • TO BE PUBLISHED [4]
  • ACTA CRYSTALLOGR D STRUCT BIOL [2]
  • J STRUCT BIOL [1]

Software

  • CRYOSPARC [25]
  • RELION [15]
  • CISTEM [6]

Microscope

  • FEI TITAN KRIOS [56]
  • FEI POLARA 300 [2]
  • TFS GLACIOS [2]
  • FEI TECNAI F20 [1]

Electron Source

  • FIELD EMISSION GUN [61]

Film or detector model

  • GATAN K2 SUMMIT 4K X 4K [38]
  • GATAN K3 BIOQUANTUM 6K X 4K [16]
  • GATAN K3 6K X 4K [7]

External links

  • PDB [61]
  • AlphaFold DB [46]
  • PDBe-Kb [46]
  • UniProt [46]
  • Gene Ontology [45]
  • InterPro [45]
  • Pfam [41]
  • ChEBI [36]
  • DrugBank [31]
  • ChEMBL [28]
  • EMPIAR [25]
  • Complex Portal [11]