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grant_code:"R01GM117372"

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Current Database

  • EMDB [11]

Current status

  • REL [11]

Sample type

  • Complex [11]
  • Protein [11]
  • Ligand [7]

Organism

  • Homo sapiens [8]
  • Clostridium perfringens [4]
  • Paramecium bursaria chlorella virus 1 [3]
  • Paramecium bursaria chlorella virus cz-2 [3]
  • Xenopus laevis [3]
  • Lama glama [3]
  • Pseudomonas aeruginosa [1]
  • Synthetic construct [1]

EM Method

  • Single-particle [11]

Resolution

  • ≥ 2Å and < 3Å [2]
  • ≥ 3Å and < 4Å [7]
  • ≥ 5Å and < 6Å [1]
  • ≥ 6Å and < 8Å [1]

Model molecular weight

  • 50-100 kDa [5]
  • 100-250 kDa [5]

Release Date

  • 2024 [8]
  • 2022 [3]

Author by name

  • Erramilli SK [11]
  • Kossiakoff AA [11]
  • Gawda T [6]
  • Gorniak I [6]
  • Stephens Z [6]
  • Zimmer J [6]
  • Vecchio AJ [4]
  • Dominik PK [3]
  • Ogbu CP [3]
  • Orlando BJ [3]
  • Roy S [3]
  • Knejski P [1]
  • Knejski PP [1]
  • Rathnayake SS [1]

Author by ORCID

  • Gawda T [6]
  • Zimmer J [6]
  • Gorniak I [6]
  • Kossiakoff AA [6]
  • Erramilli SK [4]
  • Ogbu CP [3]
  • Roy S [3]
  • Vecchio AJ [3]
  • Knejski PP [1]

Journal

  • NAT STRUCT MOL BIOL [6]
  • J BIOL CHEM [3]
  • STRUCTURE [2]

Software

  • CRYOSPARC [8]
  • UCSF CHIMERA [1]

Microscope

  • FEI TITAN KRIOS [8]
  • FEI TALOS ARCTICA [3]

Electron Source

  • FIELD EMISSION GUN [11]

Film or detector model

  • GATAN K3 6K X 4K [6]
  • FEI FALCON III 4K X 4K [3]
  • GATAN K3 BIOQUANTUM 6K X 4K [2]

External links

  • PDB [11]
  • UniProt [11]
  • AlphaFold DB [8]
  • PDBe-Kb [8]
  • ChEBI [7]
  • ChEMBL [7]
  • DrugBank [7]
  • Gene Ontology [7]
  • InterPro [7]
  • Pfam [7]
  • EMPIAR [4]
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Showing 1 - 10 of 11. Page 1 of 2
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EMD-45749
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Cryo-EM structure of human claudin-4 complex with Clostridium perfringens enterotoxin, sFab COP-1, and Nanobody
CryoEM
Release date: Aug. 7, 2024
Resolution: 2.83 Å
EM Method: Single-particle
Fitted PDBs: 9cmi
Q-score: 0.468
Similar entry percentile: 30%

Rathnayake SS, Erramilli SK, Kossiakoff AA, Vecchio AJ

Structure (2024) 32 pp. 1936- [ DOI: doi:10.1016/j.str.2024.09.015 Pubmed: 39383874 ]

EMD-40591
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Xenopus laevis hyaluronan synthase 1
CryoEM
Release date: May 1, 2024
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 8smm
Q-score: 0.504
Similar entry percentile: 66%

Gorniak I, Stephens Z, Erramilli SK, Gawda T, Kossiakoff AA, Zimmer J

Nat Struct Mol Biol (2025) 32 pp. 161-171 [ Pubmed: 39322765 DOI: doi:10.1038/s41594-024-01389-1 ]

EMD-40594
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Xenopus laevis hyaluronan synthase 1, nascent HA polymer bound state
CryoEM
Release date: May 1, 2024
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 8smn
Q-score: 0.557
Similar entry percentile: 88%

Gorniak I, Stephens Z, Erramilli SK, Gawda T, Kossiakoff AA, Zimmer J

Nat Struct Mol Biol (2025) 32 pp. 161-171 [ Pubmed: 39322765 DOI: doi:10.1038/s41594-024-01389-1 ]

EMD-40598
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Xenopus laevis hyaluronan synthase 1, UDP-bound, gating loop inserted state
CryoEM
Release date: May 1, 2024
Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 8smp
Q-score: 0.511
Similar entry percentile: 79%

Gorniak I, Stephens Z, Erramilli SK, Gawda T, Kossiakoff AA, Zimmer J

Nat Struct Mol Biol (2025) 32 pp. 161-171 [ Pubmed: 39322765 DOI: doi:10.1038/s41594-024-01389-1 ]

EMD-40622
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3D View
Raw data
EMPIAR-13328
Chlorella virus Hyaluronan Synthase bound to GlcA extended GlcNAc primer
CryoEM
Release date: May 1, 2024
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 8snc
Q-score: 0.509
Similar entry percentile: 68%

Gorniak I, Stephens Z, Erramilli SK, Gawda T, Kossiakoff AA, Zimmer J

Nat Struct Mol Biol (2025) 32 pp. 161-171 [ Pubmed: 39322765 DOI: doi:10.1038/s41594-024-01389-1 ]

EMD-40623
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Raw data
EMPIAR-13334
Chlorella virus Hyaluronan Synthase bound to GlcNAc primer and UDP-GlcA
CryoEM
Release date: May 1, 2024
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 8snd
Q-score: 0.512
Similar entry percentile: 65%

Gorniak I, Stephens Z, Erramilli SK, Gawda T, Kossiakoff AA, Zimmer J

Nat Struct Mol Biol (2025) 32 pp. 161-171 [ Pubmed: 39322765 DOI: doi:10.1038/s41594-024-01389-1 ]

EMD-40624
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Raw data
EMPIAR-13337
Chlorella virus Hyaluronan Synthase bound to GlcA extended GlcNAc primer and UDP
CryoEM
Release date: May 1, 2024
Resolution: 3.0 Å
EM Method: Single-particle
Fitted PDBs: 8sne
Q-score: 0.546
Similar entry percentile: 77%

Gorniak I, Stephens Z, Erramilli SK, Gawda T, Kossiakoff AA, Zimmer J

Nat Struct Mol Biol (2025) 32 pp. 161-171 [ Pubmed: 39322765 DOI: doi:10.1038/s41594-024-01389-1 ]

EMD-41255
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Raw data
EMPIAR-11627
Cryo-EM structure of Pseudomonas aeruginosa TonB-dependent transporter PhuR in complex with synthetic antibody and heme
CryoEM
Release date: Jan. 31, 2024
Resolution: 2.5 Å
EM Method: Single-particle
Fitted PDBs: 8the
Q-score: 0.664
Similar entry percentile: 94%

Knejski PP, Erramilli SK, Kossiakoff AA

Structure (2024) 32 pp. 411- [ DOI: doi:10.1016/j.str.2024.01.007 Pubmed: 38325368 ]

EMD-25836
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CryoEM Structure of sFab COP-3 Complex with human claudin-4 and Clostridium perfringens enterotoxin C-terminal domain focused map
CryoEM
Release date: Aug. 10, 2022
Resolution: 3.8 Å
EM Method: Single-particle

Orlando BJ, Dominik PK, Roy S, Ogbu CP, Erramilli SK, Kossiakoff AA, Vecchio AJ

J Biol Chem (2022) 298 pp. 102357-102357 [ DOI: doi:10.1016/j.jbc.2022.102357 Pubmed: 35952760 ]

EMD-25834
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CryoEM Structure of sFab COP-2 Complex with human claudin-4 and Clostridium perfringens enterotoxin C-terminal domain
CryoEM
Release date: Feb. 9, 2022
Resolution: 6.9 Å
EM Method: Single-particle
Fitted PDBs: 7tdm
Q-score: 0.197
Similar entry percentile: 73%

Orlando BJ, Dominik PK, Roy S, Ogbu CP, Erramilli SK, Kossiakoff AA, Vecchio AJ

J Biol Chem (2022) 298 pp. 102357-102357 [ DOI: doi:10.1016/j.jbc.2022.102357 Pubmed: 35952760 ]

Sort by: Download
Showing 1 - 10 of 11. Page 1 of 2
Display:
Statistics
×

Download


Preview 10 entries View All Download file

Filter By

Current Database

  • EMDB [11]

Current status

  • REL [11]

Sample type

  • Complex [11]
  • Protein [11]
  • Ligand [7]

Organism

  • Homo sapiens [8]
  • Clostridium perfringens [4]
  • Paramecium bursaria chlorella virus 1 [3]
  • Paramecium bursaria chlorella virus cz-2 [3]
  • Xenopus laevis [3]
  • Lama glama [3]
  • Pseudomonas aeruginosa [1]
  • Synthetic construct [1]

EM Method

  • Single-particle [11]

Resolution

  • ≥ 2Å and < 3Å [2]
  • ≥ 3Å and < 4Å [7]
  • ≥ 5Å and < 6Å [1]
  • ≥ 6Å and < 8Å [1]

Model molecular weight

  • 50-100 kDa [5]
  • 100-250 kDa [5]

Release Date

  • 2024 [8]
  • 2022 [3]

Author by name

  • Erramilli SK [11]
  • Kossiakoff AA [11]
  • Gawda T [6]
  • Gorniak I [6]
  • Stephens Z [6]
  • Zimmer J [6]
  • Vecchio AJ [4]
  • Dominik PK [3]
  • Ogbu CP [3]
  • Orlando BJ [3]
  • Roy S [3]
  • Knejski P [1]
  • Knejski PP [1]
  • Rathnayake SS [1]

Author by ORCID

  • Gawda T [6]
  • Zimmer J [6]
  • Gorniak I [6]
  • Kossiakoff AA [6]
  • Erramilli SK [4]
  • Ogbu CP [3]
  • Roy S [3]
  • Vecchio AJ [3]
  • Knejski PP [1]

Journal

  • NAT STRUCT MOL BIOL [6]
  • J BIOL CHEM [3]
  • STRUCTURE [2]

Software

  • CRYOSPARC [8]
  • UCSF CHIMERA [1]

Microscope

  • FEI TITAN KRIOS [8]
  • FEI TALOS ARCTICA [3]

Electron Source

  • FIELD EMISSION GUN [11]

Film or detector model

  • GATAN K3 6K X 4K [6]
  • FEI FALCON III 4K X 4K [3]
  • GATAN K3 BIOQUANTUM 6K X 4K [2]

External links

  • PDB [11]
  • UniProt [11]
  • AlphaFold DB [8]
  • PDBe-Kb [8]
  • ChEBI [7]
  • ChEMBL [7]
  • DrugBank [7]
  • Gene Ontology [7]
  • InterPro [7]
  • Pfam [7]
  • EMPIAR [4]