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grant_code:"DP2EB020402"

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Current Database

  • EMDB [20]

Current status

  • REL [20]

Sample type

  • Complex [20]
  • Protein [20]
  • Ligand [10]
  • RNA [1]

Organism

  • Homo sapiens [7]
  • Proteus penneri [2]
  • Thermoplasma acidophilum [2]
  • Pseudomonas aeruginosa [2]
  • Yersinia pestis [2]
  • Oryctolagus cuniculus [2]
  • Mus musculus [1]
  • Saccharomyces cerevisiae [1]
  • Saccharomyces cerevisiae [1]
  • Escherichia coli [1]
  • Drosophila melanogaster [1]
  • Callithrix jacchus [1]
  • Equus caballus [1]

EM Method

  • Single-particle [20]

Resolution

  • < 2Å [1]
  • ≥ 2Å and < 3Å [5]
  • ≥ 3Å and < 4Å [11]
  • ≥ 4Å and < 5Å [3]

Model molecular weight

  • 50-100 kDa [3]
  • 100-250 kDa [2]
  • 250-500 kDa [13]
  • 500-1000 kDa [2]

Release Date

  • 2020 [5]
  • 2019 [5]
  • 2018 [5]
  • 2017 [5]

Author by name

  • Lander GC [20]
  • Herzik Jr Ma [13]
  • Wu M [13]
  • Herzik MA [9]
  • Hirschi M [8]
  • Borschel WF [6]
  • Lee SY [6]
  • Song AS [5]
  • Zubcevic L [5]
  • Puchades C [3]
  • Shin M [3]
  • Wiseman RL [3]
  • Adjei E [2]
  • Asmita A [2]
  • Davidson AR [2]
  • Golden SM [2]
  • Karzai AW [2]
  • Lu WT [2]
  • Puri N [2]
  • Santiago-frangos A [2]
  • Wiedenheft B [2]
  • Wilkinson R [2]
  • Giuliano CJ [1]
  • Glynn SE [1]
  • Rampello AJ [1]
  • Ren D [1]
  • Roll-mecak A [1]
  • Sandate CR [1]
  • Suo Y [1]
  • Szyk A [1]
  • Wie J [1]
  • Zehr EA [1]

Author by ORCID

  • Lander GC [17]
  • Wu M [13]
  • Herzik Jr Ma [10]
  • Lee SY [5]
  • Hirschi M [5]
  • Zubcevic L [5]
  • Song AS [5]
  • Wiseman RL [3]
  • Shin M [3]
  • Puchades C [3]
  • Adjei E [2]
  • Wilkinson R [2]
  • Wiedenheft B [2]
  • Santiago-frangos A [2]
  • Davidson AR [2]
  • Asmita A [2]
  • Glynn SE [1]
  • Giuliano CJ [1]
  • Wie J [1]
  • Sandate CR [1]
  • Roll-mecak A [1]

Journal

  • NAT COMMUN [10]
  • NAT METHODS [3]
  • J STRUCT BIOL X [2]
  • SCI ADV [2]
  • NAT STRUCT MOL BIOL [1]
  • NATURE [1]
  • SCIENCE [1]

Software

  • RELION [17]
  • CTFFIND [3]
  • CRYOSPARC [1]

Microscope

  • FEI TALOS ARCTICA [17]
  • FEI TITAN KRIOS [3]

Electron Source

  • FIELD EMISSION GUN [20]

Film or detector model

  • GATAN K2 SUMMIT 4K X 4K [20]

External links

  • PDB [20]
  • UniProt [20]
  • AlphaFold DB [18]
  • Gene Ontology [17]
  • InterPro [17]
  • PDBe-Kb [17]
  • Pfam [14]
  • ChEBI [10]
  • ChEMBL [8]
  • DrugBank [8]
  • EMPIAR [8]
  • CATH [7]
  • Complex Portal [7]
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Showing 1 - 10 of 20. Page 1 of 2
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EMD-21516
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3D View
Cryo-EM structure of anti-CRISPR AcrIF9, bound to the type I-F crRNA-guided CRISPR surveillance complex
CryoEM
Release date: May 13, 2020
Resolution: 3.9 Å
EM Method: Single-particle
Fitted PDBs: 6w1x
Q-score: 0.36
Similar entry percentile: 39%

Hirschi M, Lu WT, Santiago-Frangos A, Wilkinson R, Golden SM, Davidson AR, Lander GC, Wiedenheft B

Nat Commun (2020) 11 pp. 2730-2730 [ Pubmed: 32483187 DOI: doi:10.1038/s41467-020-16512-1 ]

EMD-21517
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3D View
Cryo-EM structure of anti-CRISPR AcrIF9 and dsDNA, bound to the type I-F crRNA-guided CRISPR surveillance complex
CryoEM
Release date: May 13, 2020
Resolution: 4.2 Å
EM Method: Single-particle
Fitted PDBs: 6whi
Q-score: 0.373
Similar entry percentile: 64%

Hirschi M, Lu WT, Santiago-Frangos A, Wilkinson R, Golden SM, Davidson AR, Lander GC, Wiedenheft B

Nat Commun (2020) 11 pp. 2730-2730 [ Pubmed: 32483187 DOI: doi:10.1038/s41467-020-16512-1 ]

EMD-21023
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3D View
Raw data
EMPIAR-10338
Single-particle cryo-EM reconstruction of rabbit muscle aldolase using 200 keV
CryoEM
Release date: Feb. 12, 2020
Resolution: 2.13 Å
EM Method: Single-particle
Fitted PDBs: 6v20

Wu M, Lander GC, Herzik Jr MA

J Struct Biol X (2020) 4 pp. 100020-100020 [ Pubmed: 32647824 DOI: doi:10.1016/j.yjsbx.2020.100020 ]

EMD-21024
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3D View
Raw data
EMPIAR-10337
Single-particle cryo-EM reconstruction of mouse heavy chain apoferritin at 200 keV
CryoEM
Release date: Feb. 12, 2020
Resolution: 1.75 Å
EM Method: Single-particle
Fitted PDBs: 6v21

Wu M, Lander GC, Herzik Jr MA

J Struct Biol X (2020) 4 pp. 100020-100020 [ Pubmed: 32647824 DOI: doi:10.1016/j.yjsbx.2020.100020 ]

EMD-21009
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3D View
Lon Protease from Yersinia pestis
CryoEM
Release date: Jan. 22, 2020
Resolution: 3.8 Å
EM Method: Single-particle
Fitted PDBs: 6v11
Q-score: 0.405
Similar entry percentile: 51%

Shin M, Puchades C, Asmita A, Puri N, Adjei E, Wiseman RL, Karzai AW, Lander GC

Sci Adv (2020) 6 pp. eaba8404-eaba8404 [ Pubmed: 32490208 DOI: doi:10.1126/sciadv.aba8404 ]

EMD-20226
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Spastin hexamer in complex with substrate
CryoEM
Release date: June 12, 2019
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 6p07
Q-score: 0.462
Similar entry percentile: 45%

Sandate CR, Szyk A, Zehr EA, Lander GC, Roll-Mecak A

Nat Struct Mol Biol (2019) 26 pp. 671-678 [ DOI: doi:10.1038/s41594-019-0257-3 Pubmed: 31285604 ]

EMD-20133
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Lon Protease from Yersinia pestis with Y2853 substrate
CryoEM
Release date: May 1, 2019
Resolution: 3.0 Å
EM Method: Single-particle
Fitted PDBs: 6on2
Q-score: 0.537
Similar entry percentile: 73%

Shin M, Puchades C, Asmita A, Puri N, Adjei E, Wiseman RL, Karzai AW, Lander GC

Sci Adv (2020) 6 pp. eaba8404-eaba8404 [ Pubmed: 32490208 DOI: doi:10.1126/sciadv.aba8404 ]

EMD-0406
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3D View
Raw data
EMPIAR-10249
Single-particle cryo-EM reconstruction of horse liver alcohol dehydrogenase using 200 keV
CryoEM
Release date: March 13, 2019
Resolution: 2.9 Å
EM Method: Single-particle
Fitted PDBs: 6nbb

Herzik Jr MA, Wu M, Lander GC

Nat Commun (2019) 10 pp. 1032-1032 [ DOI: doi:10.1038/s41467-019-08991-8 Pubmed: 30833564 ]

EMD-0407
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3D View
Raw data
EMPIAR-10250
Single-particle cryo-EM reconstruction of human methemoglobin using 200 keV, state 1
CryoEM
Release date: March 13, 2019
Resolution: 2.8 Å
EM Method: Single-particle
Fitted PDBs: 6nbc

Herzik Jr MA, Wu M, Lander GC

Nat Commun (2019) 10 pp. 1032-1032 [ DOI: doi:10.1038/s41467-019-08991-8 Pubmed: 30833564 ]

EMD-0408
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3D View
Raw data
EMPIAR-10250
Single-particle cryo-EM reconstruction of human methemoglobin using 200 keV, state 2
CryoEM
Release date: Feb. 13, 2019
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 6nbd

Herzik Jr MA, Wu M, Lander GC

Nat Commun (2019) 10 pp. 1032-1032 [ DOI: doi:10.1038/s41467-019-08991-8 Pubmed: 30833564 ]

Sort by: Download
Showing 1 - 10 of 20. Page 1 of 2
Display:
Statistics
×

Download


Preview 10 entries View All Download file

Filter By

Current Database

  • EMDB [20]

Current status

  • REL [20]

Sample type

  • Complex [20]
  • Protein [20]
  • Ligand [10]
  • RNA [1]

Organism

  • Homo sapiens [7]
  • Proteus penneri [2]
  • Thermoplasma acidophilum [2]
  • Pseudomonas aeruginosa [2]
  • Yersinia pestis [2]
  • Oryctolagus cuniculus [2]
  • Mus musculus [1]
  • Saccharomyces cerevisiae [1]
  • Saccharomyces cerevisiae [1]
  • Escherichia coli [1]
  • Drosophila melanogaster [1]
  • Callithrix jacchus [1]
  • Equus caballus [1]

EM Method

  • Single-particle [20]

Resolution

  • < 2Å [1]
  • ≥ 2Å and < 3Å [5]
  • ≥ 3Å and < 4Å [11]
  • ≥ 4Å and < 5Å [3]

Model molecular weight

  • 50-100 kDa [3]
  • 100-250 kDa [2]
  • 250-500 kDa [13]
  • 500-1000 kDa [2]

Release Date

  • 2020 [5]
  • 2019 [5]
  • 2018 [5]
  • 2017 [5]

Author by name

  • Lander GC [20]
  • Herzik Jr Ma [13]
  • Wu M [13]
  • Herzik MA [9]
  • Hirschi M [8]
  • Borschel WF [6]
  • Lee SY [6]
  • Song AS [5]
  • Zubcevic L [5]
  • Puchades C [3]
  • Shin M [3]
  • Wiseman RL [3]
  • Adjei E [2]
  • Asmita A [2]
  • Davidson AR [2]
  • Golden SM [2]
  • Karzai AW [2]
  • Lu WT [2]
  • Puri N [2]
  • Santiago-frangos A [2]
  • Wiedenheft B [2]
  • Wilkinson R [2]
  • Giuliano CJ [1]
  • Glynn SE [1]
  • Rampello AJ [1]
  • Ren D [1]
  • Roll-mecak A [1]
  • Sandate CR [1]
  • Suo Y [1]
  • Szyk A [1]
  • Wie J [1]
  • Zehr EA [1]

Author by ORCID

  • Lander GC [17]
  • Wu M [13]
  • Herzik Jr Ma [10]
  • Lee SY [5]
  • Hirschi M [5]
  • Zubcevic L [5]
  • Song AS [5]
  • Wiseman RL [3]
  • Shin M [3]
  • Puchades C [3]
  • Adjei E [2]
  • Wilkinson R [2]
  • Wiedenheft B [2]
  • Santiago-frangos A [2]
  • Davidson AR [2]
  • Asmita A [2]
  • Glynn SE [1]
  • Giuliano CJ [1]
  • Wie J [1]
  • Sandate CR [1]
  • Roll-mecak A [1]

Journal

  • NAT COMMUN [10]
  • NAT METHODS [3]
  • J STRUCT BIOL X [2]
  • SCI ADV [2]
  • NAT STRUCT MOL BIOL [1]
  • NATURE [1]
  • SCIENCE [1]

Software

  • RELION [17]
  • CTFFIND [3]
  • CRYOSPARC [1]

Microscope

  • FEI TALOS ARCTICA [17]
  • FEI TITAN KRIOS [3]

Electron Source

  • FIELD EMISSION GUN [20]

Film or detector model

  • GATAN K2 SUMMIT 4K X 4K [20]

External links

  • PDB [20]
  • UniProt [20]
  • AlphaFold DB [18]
  • Gene Ontology [17]
  • InterPro [17]
  • PDBe-Kb [17]
  • Pfam [14]
  • ChEBI [10]
  • ChEMBL [8]
  • DrugBank [8]
  • EMPIAR [8]
  • CATH [7]
  • Complex Portal [7]