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grant_code:"894862"

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Current Database

  • EMDB [41]

Current status

  • REL [41]

Sample type

  • Complex [41]
  • Ligand [22]
  • Protein [22]
  • DNA [18]
  • RNA [1]

Organism

  • Homo sapiens [22]
  • Sus scrofa [12]
  • Synthetic construct [10]
  • Saccharomyces cerevisiae [10]
  • Human mastadenovirus c [9]
  • Sus scrofa [9]
  • Unidentified adenovirus [1]
  • Saccharomyces cerevisiae [1]
  • Trichoplusia ni [1]

EM Method

  • Single-particle [41]

Resolution

  • ≥ 2Å and < 3Å [15]
  • ≥ 3Å and < 4Å [16]
  • ≥ 4Å and < 5Å [5]
  • ≥ 5Å and < 6Å [1]
  • ≥ 6Å and < 8Å [3]
  • ≥ 8Å and < 12Å [1]

Model molecular weight

  • 250-500 kDa [1]
  • 500-1000 kDa [7]
  • 1-2 MDa [14]

Release Date

  • 2021 [41]

Author by name

  • Aibara S [41]
  • Cramer P [41]
  • Schilbach S [33]
  • Dienemann C [16]
  • Grabbe F [10]
  • Agafonov DE [4]
  • Luhrmann R [4]
  • Vos SM [4]
  • Zhang S [4]
  • Luehrmann R [3]
  • Rengachari S [2]
  • Fianu I [1]

Author by ORCID

  • Schilbach S [33]
  • Cramer P [31]
  • Aibara S [27]
  • Zhang S [4]
  • Agafonov DE [4]
  • Vos SM [4]
  • Dienemann C [1]
  • Fianu I [1]
  • Rengachari S [1]

Journal

  • NATURE [22]
  • CELL [10]
  • NUCLEIC ACIDS RES [4]
  • SCIENCE [4]
  • COMMUN BIOL [1]

Software

  • RELION [15]
  • WARP [7]

Microscope

  • FEI TITAN KRIOS [40]
  • FEI TITAN [1]

Electron Source

  • FIELD EMISSION GUN [41]

Film or detector model

  • GATAN K3 BIOQUANTUM 6K X 4K [26]
  • GATAN K2 SUMMIT 4K X 4K [10]
  • GATAN K3 6K X 4K [5]

External links

  • PDB [41]
  • AlphaFold DB [22]
  • ChEBI [22]
  • ChEMBL [22]
  • DrugBank [22]
  • Gene Ontology [22]
  • InterPro [22]
  • PDBe-Kb [22]
  • Pfam [22]
  • UniProt [22]
  • Complex Portal [4]
  • SCOP2 [2]
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Showing 1 - 10 of 41. Page 1 of 5
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EMD-13129
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RNA Polymerase II dimer Class 1
CryoEM
Release date: Oct. 6, 2021
Resolution: 3.5 Å
EM Method: Single-particle
Fitted PDBs: 7ozn
Q-score: 0.387

Aibara S, Dienemann C, Cramer P

Nucleic Acids Res (2021) 49 pp. 10747-10755 [ Pubmed: 34530439 DOI: doi:10.1093/nar/gkab783 ]

EMD-13130
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RNA Polymerase II dimer Class 2
CryoEM
Release date: Oct. 6, 2021
Resolution: 3.8 Å
EM Method: Single-particle
Fitted PDBs: 7ozo
Q-score: 0.325

Aibara S, Dienemann C, Cramer P

Nucleic Acids Res (2021) 49 pp. 10747-10755 [ Pubmed: 34530439 DOI: doi:10.1093/nar/gkab783 ]

EMD-13131
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RNA Polymerase II dimer Class 3
CryoEM
Release date: Oct. 6, 2021
Resolution: 3.8 Å
EM Method: Single-particle
Fitted PDBs: 7ozp
Q-score: 0.328

Aibara S, Dienemann C, Cramer P

Nucleic Acids Res (2021) 49 pp. 10747-10755 [ Pubmed: 34530439 DOI: doi:10.1093/nar/gkab783 ]

EMD-13132
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RNA polymerase II monomer without nucleic acid
CryoEM
Release date: Oct. 6, 2021
Resolution: 3.1 Å
EM Method: Single-particle

Aibara S, Dienemann C, Cramer P

Nucleic Acids Res (2021) 49 pp. 10747-10755 [ Pubmed: 34530439 DOI: doi:10.1093/nar/gkab783 ]

EMD-12719
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Yeast RNA polymerase II transcription pre-initiation complex with initial transcription bubble
CryoEM
Release date: June 16, 2021
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 7o4i
Q-score: 0.4

Schilbach S, Aibara S, Dienemann C, Grabbe F, Cramer P

Cell (2021) 184 pp. 4064-4072.e28 [ Pubmed: 34133942 DOI: doi:10.1016/j.cell.2021.05.012 ]

EMD-12720
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Yeast RNA polymerase II transcription pre-initiation complex consensus
CryoEM
Release date: June 16, 2021
Resolution: 2.9 Å
EM Method: Single-particle
Fitted PDBs: 7o4j
Q-score: 0.518

Schilbach S, Aibara S, Dienemann C, Grabbe F, Cramer P

Cell (2021) 184 pp. 4064-4072.e28 [ Pubmed: 34133942 DOI: doi:10.1016/j.cell.2021.05.012 ]

EMD-12721
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Yeast TFIIH in the contracted state within the pre-initiation complex
CryoEM
Release date: June 16, 2021
Resolution: 3.6 Å
EM Method: Single-particle
Fitted PDBs: 7o4k
Q-score: 0.433

Schilbach S, Aibara S, Dienemann C, Grabbe F, Cramer P

Cell (2021) 184 pp. 4064-4072.e28 [ Pubmed: 34133942 DOI: doi:10.1016/j.cell.2021.05.012 ]

EMD-12722
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Yeast TFIIH in the expanded state within the pre-initiation complex
CryoEM
Release date: June 16, 2021
Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 7o4l
Q-score: 0.44

Schilbach S, Aibara S, Dienemann C, Grabbe F, Cramer P

Cell (2021) 184 pp. 4064-4072.e28 [ Pubmed: 34133942 DOI: doi:10.1016/j.cell.2021.05.012 ]

EMD-12723
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Focused refinement of the upstream complex region of a RNA polymerase II transcription pre-initiation assembly
CryoEM
Release date: June 16, 2021
Resolution: 3.2 Å
EM Method: Single-particle

Schilbach S, Aibara S, Dienemann C, Grabbe F, Cramer P

Cell (2021) 184 pp. 4064-4072.e28 [ Pubmed: 34133942 DOI: doi:10.1016/j.cell.2021.05.012 ]

EMD-12724
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3D View
Focused refinement of RNA polymerase II 10-subunit - TFIIB - TFIIF region of a transcription pre-initiation assembly
CryoEM
Release date: June 16, 2021
Resolution: 2.8 Å
EM Method: Single-particle

Schilbach S, Aibara S, Dienemann C, Grabbe F, Cramer P

Cell (2021) 184 pp. 4064-4072.e28 [ Pubmed: 34133942 DOI: doi:10.1016/j.cell.2021.05.012 ]

Sort by: Download
Showing 1 - 10 of 41. Page 1 of 5
Display:
Statistics
×

Download











































Preview first 10
Download

Filter By

Current Database

  • EMDB [41]

Current status

  • REL [41]

Sample type

  • Complex [41]
  • Ligand [22]
  • Protein [22]
  • DNA [18]
  • RNA [1]

Organism

  • Homo sapiens [22]
  • Sus scrofa [12]
  • Synthetic construct [10]
  • Saccharomyces cerevisiae [10]
  • Human mastadenovirus c [9]
  • Sus scrofa [9]
  • Unidentified adenovirus [1]
  • Saccharomyces cerevisiae [1]
  • Trichoplusia ni [1]

EM Method

  • Single-particle [41]

Resolution

  • ≥ 2Å and < 3Å [15]
  • ≥ 3Å and < 4Å [16]
  • ≥ 4Å and < 5Å [5]
  • ≥ 5Å and < 6Å [1]
  • ≥ 6Å and < 8Å [3]
  • ≥ 8Å and < 12Å [1]

Model molecular weight

  • 250-500 kDa [1]
  • 500-1000 kDa [7]
  • 1-2 MDa [14]

Release Date

  • 2021 [41]

Author by name

  • Aibara S [41]
  • Cramer P [41]
  • Schilbach S [33]
  • Dienemann C [16]
  • Grabbe F [10]
  • Agafonov DE [4]
  • Luhrmann R [4]
  • Vos SM [4]
  • Zhang S [4]
  • Luehrmann R [3]
  • Rengachari S [2]
  • Fianu I [1]

Author by ORCID

  • Schilbach S [33]
  • Cramer P [31]
  • Aibara S [27]
  • Zhang S [4]
  • Agafonov DE [4]
  • Vos SM [4]
  • Dienemann C [1]
  • Fianu I [1]
  • Rengachari S [1]

Journal

  • NATURE [22]
  • CELL [10]
  • NUCLEIC ACIDS RES [4]
  • SCIENCE [4]
  • COMMUN BIOL [1]

Software

  • RELION [15]
  • WARP [7]

Microscope

  • FEI TITAN KRIOS [40]
  • FEI TITAN [1]

Electron Source

  • FIELD EMISSION GUN [41]

Film or detector model

  • GATAN K3 BIOQUANTUM 6K X 4K [26]
  • GATAN K2 SUMMIT 4K X 4K [10]
  • GATAN K3 6K X 4K [5]

External links

  • PDB [41]
  • AlphaFold DB [22]
  • ChEBI [22]
  • ChEMBL [22]
  • DrugBank [22]
  • Gene Ontology [22]
  • InterPro [22]
  • PDBe-Kb [22]
  • Pfam [22]
  • UniProt [22]
  • Complex Portal [4]
  • SCOP2 [2]