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grant_code:"GRMH-GL"

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Current Database

  • EMDB [10]

Current status

  • REL [10]

Sample type

  • Complex [10]
  • Ligand [10]
  • Protein [10]

Organism

  • Severe acute respiratory syndrome coronavirus [10]
  • Homo sapiens [10]

EM Method

  • Single-particle [10]

Resolution

  • ≥ 3Å and < 4Å [3]
  • ≥ 4Å and < 5Å [5]
  • ≥ 6Å and < 8Å [2]

Model molecular weight

  • 50-100 kDa [1]
  • 100-250 kDa [3]
  • 250-500 kDa [1]
  • 500-1000 kDa [5]

Release Date

  • 2023 [10]

Author by name

  • Chen L [10]
  • Chen Q [10]
  • Chen X [10]
  • Feng C [10]
  • Gao X [10]
  • Guo L [10]
  • He J [10]
  • Hu F [10]
  • Hu P [10]
  • Huang Y [10]
  • Ke B [10]
  • Ke C [10]
  • Li F [10]
  • Li J [10]
  • Li Z [10]
  • Liang D [10]
  • Lin X [10]
  • Liu B [10]
  • Liu C [10]
  • Liu L [10]
  • Liu X [10]
  • Pei R [10]
  • Peng X [10]
  • Shi J [10]
  • Shi Q [10]
  • Su M [10]
  • Tang G [10]
  • Tang X [10]
  • Wang M [10]
  • Wang Q [10]
  • Wang Y [10]
  • Xiang H [10]
  • Xie C [10]
  • Xiong X [10]
  • Yan Q [10]
  • Yang N [10]
  • Yu H [10]
  • Zhang Y [10]
  • Zheng P [10]

Author by ORCID

  • Gao X [10]
  • Yu H [10]
  • Chen X [10]
  • Xiong X [10]
  • Tang X [10]
  • Liu L [10]
  • He J [10]
  • Chen L [10]
  • Liu C [10]
  • Shi J [10]
  • Li F [10]
  • Wang M [10]

Journal

  • NAT COMMUN [10]

Software

  • RELION [8]
  • CRYOSPARC [4]

Microscope

  • FEI TALOS ARCTICA [8]
  • FEI TITAN KRIOS [2]

Electron Source

  • FIELD EMISSION GUN [10]

Film or detector model

  • GATAN K3 6K X 4K [8]
  • FEI FALCON IV 4K X 4K [2]

External links

  • AlphaFold DB [10]
  • ChEBI [10]
  • ChEMBL [10]
  • Complex Portal [10]
  • InterPro [10]
  • PDB [10]
  • PDBe-Kb [10]
  • Pfam [10]
  • UniProt [10]
  • Gene Ontology [6]
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EMD-34649
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3D View
SARS-CoV-2 Omicron BA.1 spike trimer 6P in complex with 1 YB9-258 Fab 1 RBD up
Release date: Jan. 25, 2023
Resolution: 6.21 Å
EM Method: Single-particle
Fitted PDBs: 8hc2
Q-score: 0.154

Yu H, Liu B, Zhang Y, Gao X, Wang Q, Xiang H, Peng X, Xie C, Wang Y, Hu P, Shi J, Shi Q, Zheng P, Feng C, Tang G, Liu X, Guo L, Lin X, Li J, Liu C, Huang Y, Yang N, Chen Q, Li Z, Su M, Yan Q, Pei R, Chen X, Liu L, Hu F, Liang D, Ke B, Ke C, Li F, He J, Wang M, Chen L, Xiong X, Tang X

Nat Commun (2023) 14 pp. 1058-1058 [ Pubmed: 36828833 DOI: doi:10.1038/s41467-023-36761-0 ]

EMD-34650
Download Map
3D View
SARS-CoV-2 Omicron BA.1 spike trimer 6P in complex with 2 YB9-258 Fabs 2 RBD up
Release date: Jan. 25, 2023
Resolution: 4.35 Å
EM Method: Single-particle
Fitted PDBs: 8hc3
Q-score: 0.224

Yu H, Liu B, Zhang Y, Gao X, Wang Q, Xiang H, Peng X, Xie C, Wang Y, Hu P, Shi J, Shi Q, Zheng P, Feng C, Tang G, Liu X, Guo L, Lin X, Li J, Liu C, Huang Y, Yang N, Chen Q, Li Z, Su M, Yan Q, Pei R, Chen X, Liu L, Hu F, Liang D, Ke B, Ke C, Li F, He J, Wang M, Chen L, Xiong X, Tang X

Nat Commun (2023) 14 pp. 1058-1058 [ Pubmed: 36828833 DOI: doi:10.1038/s41467-023-36761-0 ]

EMD-34651
Download Map
3D View
SARS-CoV-2 wildtype spike trimer 6P in complex with 3 YB9-258 Fabs and 3 R1-32 Fabs 3 RBD up
Release date: Jan. 25, 2023
Resolution: 3.54 Å
EM Method: Single-particle
Fitted PDBs: 8hc4
Q-score: 0.221

Yu H, Liu B, Zhang Y, Gao X, Wang Q, Xiang H, Peng X, Xie C, Wang Y, Hu P, Shi J, Shi Q, Zheng P, Feng C, Tang G, Liu X, Guo L, Lin X, Li J, Liu C, Huang Y, Yang N, Chen Q, Li Z, Su M, Yan Q, Pei R, Chen X, Liu L, Hu F, Liang D, Ke B, Ke C, Li F, He J, Wang M, Chen L, Xiong X, Tang X

Nat Commun (2023) 14 pp. 1058-1058 [ Pubmed: 36828833 DOI: doi:10.1038/s41467-023-36761-0 ]

EMD-34652
Download Map
3D View
SARS-CoV-2 wildtype S1 in complex with YB9-258 Fab and R1-32 Fab
Release date: Jan. 25, 2023
Resolution: 3.43 Å
EM Method: Single-particle
Fitted PDBs: 8hc5
Q-score: 0.282

Yu H, Liu B, Zhang Y, Gao X, Wang Q, Xiang H, Peng X, Xie C, Wang Y, Hu P, Shi J, Shi Q, Zheng P, Feng C, Tang G, Liu X, Guo L, Lin X, Li J, Liu C, Huang Y, Yang N, Chen Q, Li Z, Su M, Yan Q, Pei R, Chen X, Liu L, Hu F, Liang D, Ke B, Ke C, Li F, He J, Wang M, Chen L, Xiong X, Tang X

Nat Commun (2023) 14 pp. 1058-1058 [ Pubmed: 36828833 DOI: doi:10.1038/s41467-023-36761-0 ]

EMD-34653
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3D View
SARS-CoV-2 Omicron BA.1 spike trimer 6P in complex with YB9-258 Fab, focused refinement of Fab region
Release date: Jan. 25, 2023
Resolution: 4.69 Å
EM Method: Single-particle
Fitted PDBs: 8hc6
Q-score: 0.221

Yu H, Liu B, Zhang Y, Gao X, Wang Q, Xiang H, Peng X, Xie C, Wang Y, Hu P, Shi J, Shi Q, Zheng P, Feng C, Tang G, Liu X, Guo L, Lin X, Li J, Liu C, Huang Y, Yang N, Chen Q, Li Z, Su M, Yan Q, Pei R, Chen X, Liu L, Hu F, Liang D, Ke B, Ke C, Li F, He J, Wang M, Chen L, Xiong X, Tang X

Nat Commun (2023) 14 pp. 1058-1058 [ Pubmed: 36828833 DOI: doi:10.1038/s41467-023-36761-0 ]

EMD-34654
Download Map
3D View
SARS-CoV-2 Omicron BA.1 spike trimer 6P complex with YB9-258 Fab, focused refinement of RBD-dimer region
Release date: Jan. 25, 2023
Resolution: 4.54 Å
EM Method: Single-particle
Fitted PDBs: 8hc7
Q-score: 0.234

Yu H, Liu B, Zhang Y, Gao X, Wang Q, Xiang H, Peng X, Xie C, Wang Y, Hu P, Shi J, Shi Q, Zheng P, Feng C, Tang G, Liu X, Guo L, Lin X, Li J, Liu C, Huang Y, Yang N, Chen Q, Li Z, Su M, Yan Q, Pei R, Chen X, Liu L, Hu F, Liang D, Ke B, Ke C, Li F, He J, Wang M, Chen L, Xiong X, Tang X

Nat Commun (2023) 14 pp. 1058-1058 [ Pubmed: 36828833 DOI: doi:10.1038/s41467-023-36761-0 ]

EMD-34655
Download Map
3D View
SARS-CoV-2 Omicron BA.1 spike trimer 6P in complex with YB13-292 Fab, focused refinement of Fab region
Release date: Jan. 25, 2023
Resolution: 3.95 Å
EM Method: Single-particle
Fitted PDBs: 8hc8
Q-score: 0.367

Yu H, Liu B, Zhang Y, Gao X, Wang Q, Xiang H, Peng X, Xie C, Wang Y, Hu P, Shi J, Shi Q, Zheng P, Feng C, Tang G, Liu X, Guo L, Lin X, Li J, Liu C, Huang Y, Yang N, Chen Q, Li Z, Su M, Yan Q, Pei R, Chen X, Liu L, Hu F, Liang D, Ke B, Ke C, Li F, He J, Wang M, Chen L, Xiong X, Tang X

Nat Commun (2023) 14 pp. 1058-1058 [ Pubmed: 36828833 DOI: doi:10.1038/s41467-023-36761-0 ]

EMD-34656
Download Map
3D View
SARS-CoV-2 Omicron BA.1 spike trimer 6P in complex with 3 YB13-292 Fabs 3 RBD down
Release date: Jan. 25, 2023
Resolution: 6.03 Å
EM Method: Single-particle
Fitted PDBs: 8hc9
Q-score: 0.156

Yu H, Liu B, Zhang Y, Gao X, Wang Q, Xiang H, Peng X, Xie C, Wang Y, Hu P, Shi J, Shi Q, Zheng P, Feng C, Tang G, Liu X, Guo L, Lin X, Li J, Liu C, Huang Y, Yang N, Chen Q, Li Z, Su M, Yan Q, Pei R, Chen X, Liu L, Hu F, Liang D, Ke B, Ke C, Li F, He J, Wang M, Chen L, Xiong X, Tang X

Nat Commun (2023) 14 pp. 1058-1058 [ Pubmed: 36828833 DOI: doi:10.1038/s41467-023-36761-0 ]

EMD-34657
Download Map
3D View
SARS-CoV-2 Omicron BA.1 spike trimer 6P in complex with 3 YB13-292 Fabs 1 RBD up
Release date: Jan. 25, 2023
Resolution: 4.35 Å
EM Method: Single-particle
Fitted PDBs: 8hca
Q-score: 0.217

Yu H, Liu B, Zhang Y, Gao X, Wang Q, Xiang H, Peng X, Xie C, Wang Y, Hu P, Shi J, Shi Q, Zheng P, Feng C, Tang G, Liu X, Guo L, Lin X, Li J, Liu C, Huang Y, Yang N, Chen Q, Li Z, Su M, Yan Q, Pei R, Chen X, Liu L, Hu F, Liang D, Ke B, Ke C, Li F, He J, Wang M, Chen L, Xiong X, Tang X

Nat Commun (2023) 14 pp. 1058-1058 [ Pubmed: 36828833 DOI: doi:10.1038/s41467-023-36761-0 ]

EMD-34658
Download Map
3D View
SARS-CoV-2 Omicron BA.1 spike trimer 6P in complex with 3 YB13-292 Fabs 2 RBD up
Release date: Jan. 25, 2023
Resolution: 4.18 Å
EM Method: Single-particle
Fitted PDBs: 8hcb
Q-score: 0.256

Yu H, Liu B, Zhang Y, Gao X, Wang Q, Xiang H, Peng X, Xie C, Wang Y, Hu P, Shi J, Shi Q, Zheng P, Feng C, Tang G, Liu X, Guo L, Lin X, Li J, Liu C, Huang Y, Yang N, Chen Q, Li Z, Su M, Yan Q, Pei R, Chen X, Liu L, Hu F, Liang D, Ke B, Ke C, Li F, He J, Wang M, Chen L, Xiong X, Tang X

Nat Commun (2023) 14 pp. 1058-1058 [ Pubmed: 36828833 DOI: doi:10.1038/s41467-023-36761-0 ]

Sort by: Download
Showing 1 - 10 of 10. Page 1 of 1
Display:
Statistics
×

Download











































Preview first 10
Download

Filter By

Current Database

  • EMDB [10]

Current status

  • REL [10]

Sample type

  • Complex [10]
  • Ligand [10]
  • Protein [10]

Organism

  • Severe acute respiratory syndrome coronavirus [10]
  • Homo sapiens [10]

EM Method

  • Single-particle [10]

Resolution

  • ≥ 3Å and < 4Å [3]
  • ≥ 4Å and < 5Å [5]
  • ≥ 6Å and < 8Å [2]

Model molecular weight

  • 50-100 kDa [1]
  • 100-250 kDa [3]
  • 250-500 kDa [1]
  • 500-1000 kDa [5]

Release Date

  • 2023 [10]

Author by name

  • Chen L [10]
  • Chen Q [10]
  • Chen X [10]
  • Feng C [10]
  • Gao X [10]
  • Guo L [10]
  • He J [10]
  • Hu F [10]
  • Hu P [10]
  • Huang Y [10]
  • Ke B [10]
  • Ke C [10]
  • Li F [10]
  • Li J [10]
  • Li Z [10]
  • Liang D [10]
  • Lin X [10]
  • Liu B [10]
  • Liu C [10]
  • Liu L [10]
  • Liu X [10]
  • Pei R [10]
  • Peng X [10]
  • Shi J [10]
  • Shi Q [10]
  • Su M [10]
  • Tang G [10]
  • Tang X [10]
  • Wang M [10]
  • Wang Q [10]
  • Wang Y [10]
  • Xiang H [10]
  • Xie C [10]
  • Xiong X [10]
  • Yan Q [10]
  • Yang N [10]
  • Yu H [10]
  • Zhang Y [10]
  • Zheng P [10]

Author by ORCID

  • Gao X [10]
  • Yu H [10]
  • Chen X [10]
  • Xiong X [10]
  • Tang X [10]
  • Liu L [10]
  • He J [10]
  • Chen L [10]
  • Liu C [10]
  • Shi J [10]
  • Li F [10]
  • Wang M [10]

Journal

  • NAT COMMUN [10]

Software

  • RELION [8]
  • CRYOSPARC [4]

Microscope

  • FEI TALOS ARCTICA [8]
  • FEI TITAN KRIOS [2]

Electron Source

  • FIELD EMISSION GUN [10]

Film or detector model

  • GATAN K3 6K X 4K [8]
  • FEI FALCON IV 4K X 4K [2]

External links

  • AlphaFold DB [10]
  • ChEBI [10]
  • ChEMBL [10]
  • Complex Portal [10]
  • InterPro [10]
  • PDB [10]
  • PDBe-Kb [10]
  • Pfam [10]
  • UniProt [10]
  • Gene Ontology [6]