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grant_code:"AS-CDA-109- L08"

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Current Database

  • EMDB [34]

Current status

  • REL [34]

Sample type

  • Cellular component [18]
  • Protein [17]
  • Complex [16]
  • Ligand [10]

Organism

  • Porcine epidemic diarrhea virus [18]
  • Homo sapiens [16]
  • Saccharomyces cerevisiae [5]

EM Method

  • Single-particle [29]
  • Subtomogram averaging [5]

Resolution

  • ≥ 3Å and < 4Å [18]
  • ≥ 4Å and < 5Å [4]
  • ≥ 5Å and < 6Å [2]
  • ≥ 6Å and < 8Å [3]
  • ≥ 8Å and < 12Å [2]
  • ≥ 16Å and < 20Å [1]
  • ≥ 20Å and < 30Å [3]
  • ≥ 30Å [1]

Model molecular weight

  • 100-250 kDa [2]
  • 250-500 kDa [4]
  • 1-2 MDa [4]

Release Date

  • 2025 [1]
  • 2024 [15]
  • 2022 [18]

Author by name

  • Chang YC [34]
  • Draczkowski P [34]
  • Hsu SD [34]
  • Hsu STD [34]
  • Wang YS [34]
  • Chang CY [18]
  • Chang HW [18]
  • Cheng YH [18]
  • Chien YC [18]
  • Huang CY [18]
  • Khoo KH [18]
  • Tsai YX [18]
  • Wang CH [18]
  • Wu YM [18]
  • Yang TJ [18]
  • Chen SN [16]
  • Chen T [16]
  • Huang JYC [16]
  • Lin S [16]
  • Lin SY [16]
  • Shih HA [16]
  • Tsai MC [16]
  • Viner R [16]
  • Wu KP [16]

Author by ORCID

  • Chang YC [34]
  • Wang YS [34]
  • Hsu SD [34]
  • Draczkowski P [34]
  • Chang CY [18]
  • Chang HW [18]
  • Cheng YH [18]
  • Huang CY [18]
  • Chien YC [18]
  • Chang YC [18]
  • Tsai YX [18]
  • Yang TJ [18]
  • Khoo KH [18]
  • Shih HA [16]
  • Wu KP [16]
  • Chen T [16]
  • Lin S [16]
  • Viner R [16]

Journal

  • NAT COMMUN [34]

Software

  • RELION [33]
  • CRYOSPARC [28]
  • CTFFIND [23]
  • DYNAMO [5]
  • MATLAB [5]
  • UCSF CHIMERA [5]
  • UCSF CHIMERAX [1]

Microscope

  • FEI TITAN KRIOS [33]
  • TFS KRIOS [1]

Electron Source

  • FIELD EMISSION GUN [34]

Film or detector model

  • GATAN K3 6K X 4K [34]

External links

  • ChEBI [10]
  • ChEMBL [10]
  • Gene Ontology [10]
  • InterPro [10]
  • PDB [10]
  • PDBe-Kb [10]
  • Pfam [10]
  • UniProt [10]
  • AlphaFold DB [4]
  • Complex Portal [4]
  • DrugBank [4]
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EMD-36764
Download Map
3D View
Cryo-EM structure of human 26S RP Ed state bound to K11/K48-branched ubiquitin Ub chain composed of four Ub.
Release date: Jan. 22, 2025
Resolution: 3.8 Å
EM Method: Single-particle
Fitted PDBs: 8k0g
Q-score: 0.416

Draczkowski P, Chen SN, Chen T, Wang YS, Shih HA, Huang JYC, Tsai MC, Lin SY, Lin S, Viner R, Chang YC, Wu KP, Hsu SD

Nat Commun (2025) 16 pp. 9094-9094 [ DOI: doi:10.1038/s41467-025-64719-x Pubmed: 41093839 ]

EMD-36645
Composite map
Download Map
3D View
Cryo-EM structure of human 26S RP Eb state bound to K11/K48-branched ubiquitin Ub chain composed of four Ub.
Release date: Dec. 25, 2024
Resolution: 3.8 Å
EM Method: Single-particle
Fitted PDBs: 8jti
Q-score: 0.423

Draczkowski P, Chen SN, Chen T, Wang YS, Shih HA, Huang JYC, Tsai MC, Lin SY, Lin S, Viner R, Chang YC, Wu KP, Hsu SD

Nat Commun (2025) 16 pp. 9094-9094 [ DOI: doi:10.1038/s41467-025-64719-x Pubmed: 41093839 ]

EMD-36598
Download Map
3D View
Cryo-EM structure of human 26S proteasomal RP subcomplex Ea state without any bound substrate.
Release date: Dec. 18, 2024
Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 8jri
Q-score: 0.443

Draczkowski P, Chen SN, Chen T, Wang YS, Shih HA, Huang JYC, Tsai MC, Lin SY, Lin S, Viner R, Chang YC, Wu KP, Hsu SD

Nat Commun (2025) 16 pp. 9094-9094 [ DOI: doi:10.1038/s41467-025-64719-x Pubmed: 41093839 ]

EMD-36605
Download Map
3D View
Cryo-EM structure of human 26S proteasomal RP subcomplex Ea state bound to K11/K48-branched ubiquitin Ub chain composed of three Ub.
Release date: Dec. 18, 2024
Resolution: 3.6 Å
EM Method: Single-particle
Fitted PDBs: 8jrt
Q-score: 0.423

Draczkowski P, Chen SN, Chen T, Wang YS, Shih HA, Huang JYC, Tsai MC, Lin SY, Lin S, Viner R, Chang YC, Wu KP, Hsu SD

Nat Commun (2025) 16 pp. 9094-9094 [ DOI: doi:10.1038/s41467-025-64719-x Pubmed: 41093839 ]

EMD-37327
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3D View
Local refinement cryo-EM map of human 26S RP Eb state bound to K11/K48-branched ubiquitin Ub chain composed of four Ub, focused on Rpn3/Rpn7 region.
Release date: Sept. 4, 2024
Resolution: 3.9 Å
EM Method: Single-particle

Draczkowski P, Chen SN, Chen T, Wang YS, Shih HA, Huang JYC, Tsai MC, Lin SY, Lin S, Viner R, Chang YC, Wu KP, Hsu SD

Nat Commun (2025) 16 pp. 9094-9094 [ DOI: doi:10.1038/s41467-025-64719-x Pubmed: 41093839 ]

EMD-37328
Download Map
3D View
Local refinement cryo-EM map of human 26S RP Eb state bound to K11/K48-branched ubiquitin Ub chain composed of four Ub, focused on AAA ATPase subcomplex.
Release date: Sept. 4, 2024
Resolution: 3.7 Å
EM Method: Single-particle

Draczkowski P, Chen SN, Chen T, Wang YS, Shih HA, Huang JYC, Tsai MC, Lin SY, Lin S, Viner R, Chang YC, Wu KP, Hsu SD

Nat Commun (2025) 16 pp. 9094-9094 [ DOI: doi:10.1038/s41467-025-64719-x Pubmed: 41093839 ]

EMD-37334
Download Map
3D View
Consensus cryo-EM map of human 26S RP Ed state bound to K11/K48-branched ubiquitin Ub chain composed of four Ub.
Release date: Sept. 4, 2024
Resolution: 3.8 Å
EM Method: Single-particle

Draczkowski P, Chen SN, Chen T, Wang YS, Shih HA, Huang JYC, Tsai MC, Lin SY, Lin S, Viner R, Chang YC, Wu KP, Hsu SD

Nat Commun (2025) 16 pp. 9094-9094 [ DOI: doi:10.1038/s41467-025-64719-x Pubmed: 41093839 ]

EMD-37335
Download Map
3D View
Local refinement cryo-EM map of human 26S RP Ed state bound to K11/K48-branched ubiquitin Ub chain composed of four Ub, focused on the Ub binding region.
Release date: Sept. 4, 2024
Resolution: 3.7 Å
EM Method: Single-particle

Draczkowski P, Chen SN, Chen T, Wang YS, Shih HA, Huang JYC, Tsai MC, Lin SY, Lin S, Viner R, Chang YC, Wu KP, Hsu SD

Nat Commun (2025) 16 pp. 9094-9094 [ DOI: doi:10.1038/s41467-025-64719-x Pubmed: 41093839 ]

EMD-37341
Download Map
3D View
Local refinement cryo-EM map of human 26S RP Ed state bound to K11/K48-branched ubiquitin Ub chain composed of four Ub, focused on the RP lid.
Release date: Sept. 4, 2024
Resolution: 3.7 Å
EM Method: Single-particle

Draczkowski P, Chen SN, Chen T, Wang YS, Shih HA, Huang JYC, Tsai MC, Lin SY, Lin S, Viner R, Chang YC, Wu KP, Hsu SD

Nat Commun (2025) 16 pp. 9094-9094 [ DOI: doi:10.1038/s41467-025-64719-x Pubmed: 41093839 ]

EMD-37344
Download Map
3D View
Local refinement cryo-EM map of human 26S RP Ed state bound to K11/K48-branched ubiquitin Ub chain composed of four Ub, focused on AAA ATPase subcomplex.
Release date: Sept. 4, 2024
Resolution: 3.6 Å
EM Method: Single-particle

Draczkowski P, Chen SN, Chen T, Wang YS, Shih HA, Huang JYC, Tsai MC, Lin SY, Lin S, Viner R, Chang YC, Wu KP, Hsu SD

Nat Commun (2025) 16 pp. 9094-9094 [ DOI: doi:10.1038/s41467-025-64719-x Pubmed: 41093839 ]

Sort by: Download
Showing 1 - 10 of 34. Page 1 of 4
Display:
Statistics
×

Download











































Preview first 10
Download

Filter By

Current Database

  • EMDB [34]

Current status

  • REL [34]

Sample type

  • Cellular component [18]
  • Protein [17]
  • Complex [16]
  • Ligand [10]

Organism

  • Porcine epidemic diarrhea virus [18]
  • Homo sapiens [16]
  • Saccharomyces cerevisiae [5]

EM Method

  • Single-particle [29]
  • Subtomogram averaging [5]

Resolution

  • ≥ 3Å and < 4Å [18]
  • ≥ 4Å and < 5Å [4]
  • ≥ 5Å and < 6Å [2]
  • ≥ 6Å and < 8Å [3]
  • ≥ 8Å and < 12Å [2]
  • ≥ 16Å and < 20Å [1]
  • ≥ 20Å and < 30Å [3]
  • ≥ 30Å [1]

Model molecular weight

  • 100-250 kDa [2]
  • 250-500 kDa [4]
  • 1-2 MDa [4]

Release Date

  • 2025 [1]
  • 2024 [15]
  • 2022 [18]

Author by name

  • Chang YC [34]
  • Draczkowski P [34]
  • Hsu SD [34]
  • Hsu STD [34]
  • Wang YS [34]
  • Chang CY [18]
  • Chang HW [18]
  • Cheng YH [18]
  • Chien YC [18]
  • Huang CY [18]
  • Khoo KH [18]
  • Tsai YX [18]
  • Wang CH [18]
  • Wu YM [18]
  • Yang TJ [18]
  • Chen SN [16]
  • Chen T [16]
  • Huang JYC [16]
  • Lin S [16]
  • Lin SY [16]
  • Shih HA [16]
  • Tsai MC [16]
  • Viner R [16]
  • Wu KP [16]

Author by ORCID

  • Chang YC [34]
  • Wang YS [34]
  • Hsu SD [34]
  • Draczkowski P [34]
  • Chang CY [18]
  • Chang HW [18]
  • Cheng YH [18]
  • Huang CY [18]
  • Chien YC [18]
  • Chang YC [18]
  • Tsai YX [18]
  • Yang TJ [18]
  • Khoo KH [18]
  • Shih HA [16]
  • Wu KP [16]
  • Chen T [16]
  • Lin S [16]
  • Viner R [16]

Journal

  • NAT COMMUN [34]

Software

  • RELION [33]
  • CRYOSPARC [28]
  • CTFFIND [23]
  • DYNAMO [5]
  • MATLAB [5]
  • UCSF CHIMERA [5]
  • UCSF CHIMERAX [1]

Microscope

  • FEI TITAN KRIOS [33]
  • TFS KRIOS [1]

Electron Source

  • FIELD EMISSION GUN [34]

Film or detector model

  • GATAN K3 6K X 4K [34]

External links

  • ChEBI [10]
  • ChEMBL [10]
  • Gene Ontology [10]
  • InterPro [10]
  • PDB [10]
  • PDBe-Kb [10]
  • Pfam [10]
  • UniProt [10]
  • AlphaFold DB [4]
  • Complex Portal [4]
  • DrugBank [4]