Electron Microscopy Data Bank

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author:"Zhang R"

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Current Database

Current status

Sample type

Organism

Homo sapiens [121]
Bos taurus [87]
Sus scrofa [47]
Leishmania tarentolae [34]
Severe acute respiratory syndrome coronavirus [30]
Severe acute respiratory syndrome coronavirus [21]
Chlamydomonas reinhardtii [21]
Synthetic construct [16]
Acetivibrio thermocellus [13]
Mus musculus [11]
Adeno-associated dependoparvovirus a [7]
Dinoroseobacter phage vb_dshs-r4c [7]
Saccharomyces cerevisiae [7]
Toxoplasma gondii [7]
Crithidia fasciculata [6]
Xenopus laevis [6]
Senecavirus a [5]
Escherichia coli [5]
Alphapapillomavirus 9 [4]
(no species) [4]
Lawsonibacter sp. [3]
Candida parapsilosis [3]
Macaca fascicularis [3]
Venezuelan equine encephalitis virus [2]
Human immunodeficiency virus 1 [2]
Chikungunya virus [2]
Chikungunya virus [2]
Saccharomyces cerevisiae [2]
Escherichia coli [2]
Adeno-associated dependoparvovirus a [2]
Amanita phalloides [2]
Severe acute respiratory syndrome coronavirus [2]
Drosophila melanogaster [2]
Drosophila mojavensis [2]
Adeno-associated dependoparvovirus b [2]
Adeno-associated dependoparvovirus a [2]
Influenza a virus [1]
Influenza a virus [1]
Influenza a virus [1]
Varicellovirus humanalpha3 [1]
Escherichia coli [1]
Caenorhabditis elegans [1]
Strongylocentrotus purpuratus [1]
Camelus bactrianus [1]
Oryctolagus cuniculus [1]

EM Method

Resolution

Model molecular weight

Release Date

Author by name

Zhang R [397]
Brown A [193]
Zeng J [164]
Niu Q [125]
Huang W [121]
Leung MR [119]
Zeev-ben-mordehai T [119]
Wang X [79]
Anderson JR [77]
Noteborn WEM [77]
Sun C [77]
Dutcher SK [61]
Smith J [43]
Heck AJR [42]
Hevler JF [42]
Roelofs MC [42]
Zenezini Chiozzi R [42]
Beneke T [40]
Coscia A [40]
Doran MH [40]
Fochler S [40]
Gluenz E [40]
Hoog JL [40]
Lishko PV [40]
Meleppattu S [40]
Ren P [40]
Wheeler RJ [40]
Nogales E [36]
Wang Y [33]
Liu Y [32]
Li T [28]
Li Y [28]
Li X [27]
Li S [24]
Ma M [23]
Li J [22]
Yang Z [22]
Zhou B [22]
Han Y [21]
Yu J [21]
Zhao X [21]
Chen P [20]
Lou Z [20]
Shi X [20]
Wang R [20]
Zhang L [20]
Zhang Q [20]
Cao L [19]
Gao GF [18]
Lin Z [18]
Liu D [18]
Nan X [18]
Qi J [18]
Yang YR [18]
Zhu J [18]
Zhu JY [18]
Zhang Z [17]
Li L [15]
Sun JP [15]
Wang Q [15]
Xiao P [15]
Zhou BN [15]
Alushin GM [14]
Gong W [14]
Liu G [14]
Zhang X [14]
Brownd M [13]
Jagessar KL [13]
Karakas E [13]
Liu K [13]
Mchaourab HS [13]
Moradi M [13]
Polasa A [13]
Rao Z [13]
Stein R [13]
Stein RA [13]
Xie Y [13]
Zhang J [13]
Sun J [12]
Sun Z [12]
Zhang D [12]
Zhang S [12]
Zhang Y [12]
Hu M [11]
Li B [11]
Li H [11]
Sun Y [11]
Wang H [11]
Xu G [11]
Chen Q [10]
Chen Z [10]
Kellogg EH [10]
Lafrance B [10]
Qian P [10]
Su C [10]
Chen Y [9]
Cheng Z [9]
Han P [9]
Jiang Y [9]
Lei W [9]

Author by ORCID

Brown A [175]
Zeng J [145]
Zhang R [134]
Niu Q [107]
Leung MR [105]
Huang W [64]
Sun C [63]
Zeev-ben-mordehai T [63]
Noteborn WEM [63]
Roelofs MC [42]
Heck AJR [42]
Zenezini Chiozzi R [42]
Ren P [40]
Beneke T [40]
Wheeler RJ [40]
Doran MH [40]
Coscia A [40]
Lishko PV [40]
Meleppattu S [40]
Gluenz E [40]
Fochler S [40]
Nogales E [22]
Zhou B [18]
Xiao P [15]
Alushin GM [14]
Lou Z [14]
Li X [14]
Karakas E [13]
Stein RA [13]
Moradi M [13]
Mchaourab HS [13]
Polasa A [13]
Zhang R [13]
Jagessar KL [13]
Lafrance B [10]
Yang L [9]
Zhang X [9]
Gong W [9]
Sun JP [9]
Liu G [9]
Dutcher SK [8]
Gui M [8]
Mizuno N [8]
Gu Y [8]
Li S [8]
Li B [8]
Roostalu J [8]
Zheng Q [8]
Biertumpfel C [8]
Qi J [8]
Cai L [7]
Martinez-sanchez A [7]
Zhang J [7]
Petry S [7]
Cada AK [7]
Li T [7]
Xia N [7]
Zhang R [7]
Zhong ED [6]
Greber BJ [6]
Cui M [6]
Chen Q [6]
Berger B [6]
Mccollum CO [6]
Zhang Z [6]
Yan R [6]
Davis JH [6]
Lafrance BJ [6]
Ju B [6]
Ma H [6]
Cheng Z [6]
Normanno D [6]
Henkin G [6]
Liu F [6]
Howes SC [5]
Rice LM [5]
Westermann S [5]
Baker D [5]
Su C [5]
Cheng L [5]
Mcmanus CT [5]
Lander GC [5]
Wang H [5]
Wang Y [4]
Xie M [4]
Eshun-wilson L [4]
Cheng G [4]
Eisert RJ [4]
Zhou B [4]
Cai G [4]
Chen X [4]
Zhang S [4]
Tian Y [4]
Han P [4]
Yin J [4]
Fan J [4]
Chen X [4]
Gao GF [4]
Jiang D [4]
Zhang J [4]

Journal

Software

Microscope

Electron Source

Film or detector model

EMPIAR Experiment type

EMPIAR Image category

External links

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Showing 1 - 10 of 398. Page 1 of 40

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EMDB [397]
EMPIAR [1]

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EMD-71751

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Cryo-ET reconstruction of a regenerating axon after axotomy showing branching microtubules primary mouse thalamus neuronal explant, control

Release date: Dec. 3, 2025
EM Method: Tomography

Bodakuntla S, Taira K, Yamada Y, Alvarez-Brecht P, Cada AK, Basnet N, Zhang R, Martinez-Sanchez A, Biertumpfel C, Mizuno N

Nature (2025) [ DOI: doi:10.1038/s41586-025-09654-z Pubmed: 41224993 ]

EMD-71752

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Cryo-ET reconstruction of a regenerating axon after axotomy showing branching microtubules primary mouse thalamus neuronal explant

Release date: Dec. 3, 2025
EM Method: Tomography

Bodakuntla S, Taira K, Yamada Y, Alvarez-Brecht P, Cada AK, Basnet N, Zhang R, Martinez-Sanchez A, Biertumpfel C, Mizuno N

Nature (2025) [ DOI: doi:10.1038/s41586-025-09654-z Pubmed: 41224993 ]

EMD-71753

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3D View

Cryo-ET reconstruction of a regenerating axon after axotomy showing polymerizing microtubules primary mouse thalamus neuronal explant

Release date: Dec. 3, 2025
EM Method: Tomography

Bodakuntla S, Taira K, Yamada Y, Alvarez-Brecht P, Cada AK, Basnet N, Zhang R, Martinez-Sanchez A, Biertumpfel C, Mizuno N

Nature (2025) [ DOI: doi:10.1038/s41586-025-09654-z Pubmed: 41224993 ]

EMD-71754

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Cryo-ET reconstruction of a regenerating axon 24 h after axotomy primary mouse thalamus neuronal explant

Release date: Dec. 3, 2025
EM Method: Tomography

Bodakuntla S, Taira K, Yamada Y, Alvarez-Brecht P, Cada AK, Basnet N, Zhang R, Martinez-Sanchez A, Biertumpfel C, Mizuno N

Nature (2025) [ DOI: doi:10.1038/s41586-025-09654-z Pubmed: 41224993 ]

EMD-71755

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Cryo-ET reconstruction of a regenerating axon 24 h after axotomy primary mouse thalamus neuronal explant

Release date: Dec. 3, 2025
EM Method: Tomography

Bodakuntla S, Taira K, Yamada Y, Alvarez-Brecht P, Cada AK, Basnet N, Zhang R, Martinez-Sanchez A, Biertumpfel C, Mizuno N

Nature (2025) [ DOI: doi:10.1038/s41586-025-09654-z Pubmed: 41224993 ]

EMD-71840

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Cryo-ET subtomogram averaging of a stress fiber from a regenerating axon

Release date: Dec. 3, 2025
Resolution: 27.7 Å
EM Method: Subtomogram averaging

Bodakuntla S, Taira K, Yamada Y, Alvarez-Brecht P, Cada AK, Basnet N, Zhang R, Martinez-Sanchez A, Biertumpfel C, Mizuno N

Nature (2025) [ DOI: doi:10.1038/s41586-025-09654-z Pubmed: 41224993 ]

EMD-72715

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Cryo-EM structure of conoid fiber from Toxoplasma gondii 24-nm repeat

Release date: Dec. 3, 2025
Resolution: 3.14 Å
EM Method: Single-particle
Fitted PDBs: 9y9z

Zeng J, Fu Y, Qian P, Sibley LD, Zhang R

To Be Published

EMD-72717

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Cryo-EM structure of intraconoidal microtubule 2 ICMT2 from Toxoplasma gondii 8-nm repeat

Release date: Dec. 3, 2025
Resolution: 3.52 Å
EM Method: Single-particle
Fitted PDBs: 9ya1

Zeng J, Fu Y, Qian P, Niu Q, Beatty WL, Brown A, Sibley LD, Zhang R

Nat Struct Mol Biol (2025) [ DOI: doi:10.1038/s41594-025-01728-w ]

EMD-72718

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Cryo-EM structure of intraconoidal microtubule 1 ICMT1 from Toxoplasma gondii 8-nm repeat

Release date: Dec. 3, 2025
Resolution: 3.34 Å
EM Method: Single-particle
Fitted PDBs: 9ya2

Zeng J, Fu Y, Qian P, Niu Q, Beatty WL, Brown A, Sibley LD, Zhang R

Nat Struct Mol Biol (2025) [ DOI: doi:10.1038/s41594-025-01728-w ]

EMD-72719

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Cryo-EM structure of the apical region of subpellicular microtubule SPMT from Toxoplasma gondii 8-nm repeat

Release date: Dec. 3, 2025
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 9ya3

Zeng J, Fu Y, Qian P, Niu Q, Beatty WL, Brown A, Sibley LD, Zhang R

Nat Struct Mol Biol (2025) [ DOI: doi:10.1038/s41594-025-01728-w ]

Sort by: Download

Showing 1 - 10 of 398. Page 1 of 40

Display:

Statistics

Download

Select database:

EMDB [397]
EMPIAR [1]

Format:

Select the script type:

Shell (Unix-based) Batch (Windows-based)

Preview first 10

Download

Filter By

Current Database

Current status

Sample type

Organism

Homo sapiens [121]
Bos taurus [87]
Sus scrofa [47]
Leishmania tarentolae [34]
Severe acute respiratory syndrome coronavirus [30]
Severe acute respiratory syndrome coronavirus [21]
Chlamydomonas reinhardtii [21]
Synthetic construct [16]
Acetivibrio thermocellus [13]
Mus musculus [11]
Adeno-associated dependoparvovirus a [7]
Dinoroseobacter phage vb_dshs-r4c [7]
Saccharomyces cerevisiae [7]
Toxoplasma gondii [7]
Crithidia fasciculata [6]
Xenopus laevis [6]
Senecavirus a [5]
Escherichia coli [5]
Alphapapillomavirus 9 [4]
(no species) [4]
Lawsonibacter sp. [3]
Candida parapsilosis [3]
Macaca fascicularis [3]
Venezuelan equine encephalitis virus [2]
Human immunodeficiency virus 1 [2]
Chikungunya virus [2]
Chikungunya virus [2]
Saccharomyces cerevisiae [2]
Escherichia coli [2]
Adeno-associated dependoparvovirus a [2]
Amanita phalloides [2]
Severe acute respiratory syndrome coronavirus [2]
Drosophila melanogaster [2]
Drosophila mojavensis [2]
Adeno-associated dependoparvovirus b [2]
Adeno-associated dependoparvovirus a [2]
Influenza a virus [1]
Influenza a virus [1]
Influenza a virus [1]
Varicellovirus humanalpha3 [1]
Escherichia coli [1]
Caenorhabditis elegans [1]
Strongylocentrotus purpuratus [1]
Camelus bactrianus [1]
Oryctolagus cuniculus [1]

EM Method

Resolution

Model molecular weight

Release Date

Author by name

Zhang R [397]
Brown A [193]
Zeng J [164]
Niu Q [125]
Huang W [121]
Leung MR [119]
Zeev-ben-mordehai T [119]
Wang X [79]
Anderson JR [77]
Noteborn WEM [77]
Sun C [77]
Dutcher SK [61]
Smith J [43]
Heck AJR [42]
Hevler JF [42]
Roelofs MC [42]
Zenezini Chiozzi R [42]
Beneke T [40]
Coscia A [40]
Doran MH [40]
Fochler S [40]
Gluenz E [40]
Hoog JL [40]
Lishko PV [40]
Meleppattu S [40]
Ren P [40]
Wheeler RJ [40]
Nogales E [36]
Wang Y [33]
Liu Y [32]
Li T [28]
Li Y [28]
Li X [27]
Li S [24]
Ma M [23]
Li J [22]
Yang Z [22]
Zhou B [22]
Han Y [21]
Yu J [21]
Zhao X [21]
Chen P [20]
Lou Z [20]
Shi X [20]
Wang R [20]
Zhang L [20]
Zhang Q [20]
Cao L [19]
Gao GF [18]
Lin Z [18]
Liu D [18]
Nan X [18]
Qi J [18]
Yang YR [18]
Zhu J [18]
Zhu JY [18]
Zhang Z [17]
Li L [15]
Sun JP [15]
Wang Q [15]
Xiao P [15]
Zhou BN [15]
Alushin GM [14]
Gong W [14]
Liu G [14]
Zhang X [14]
Brownd M [13]
Jagessar KL [13]
Karakas E [13]
Liu K [13]
Mchaourab HS [13]
Moradi M [13]
Polasa A [13]
Rao Z [13]
Stein R [13]
Stein RA [13]
Xie Y [13]
Zhang J [13]
Sun J [12]
Sun Z [12]
Zhang D [12]
Zhang S [12]
Zhang Y [12]
Hu M [11]
Li B [11]
Li H [11]
Sun Y [11]
Wang H [11]
Xu G [11]
Chen Q [10]
Chen Z [10]
Kellogg EH [10]
Lafrance B [10]
Qian P [10]
Su C [10]
Chen Y [9]
Cheng Z [9]
Han P [9]
Jiang Y [9]
Lei W [9]

Author by ORCID

Brown A [175]
Zeng J [145]
Zhang R [134]
Niu Q [107]
Leung MR [105]
Huang W [64]
Sun C [63]
Zeev-ben-mordehai T [63]
Noteborn WEM [63]
Roelofs MC [42]
Heck AJR [42]
Zenezini Chiozzi R [42]
Ren P [40]
Beneke T [40]
Wheeler RJ [40]
Doran MH [40]
Coscia A [40]
Lishko PV [40]
Meleppattu S [40]
Gluenz E [40]
Fochler S [40]
Nogales E [22]
Zhou B [18]
Xiao P [15]
Alushin GM [14]
Lou Z [14]
Li X [14]
Karakas E [13]
Stein RA [13]
Moradi M [13]
Mchaourab HS [13]
Polasa A [13]
Zhang R [13]
Jagessar KL [13]
Lafrance B [10]
Yang L [9]
Zhang X [9]
Gong W [9]
Sun JP [9]
Liu G [9]
Dutcher SK [8]
Gui M [8]
Mizuno N [8]
Gu Y [8]
Li S [8]
Li B [8]
Roostalu J [8]
Zheng Q [8]
Biertumpfel C [8]
Qi J [8]
Cai L [7]
Martinez-sanchez A [7]
Zhang J [7]
Petry S [7]
Cada AK [7]
Li T [7]
Xia N [7]
Zhang R [7]
Zhong ED [6]
Greber BJ [6]
Cui M [6]
Chen Q [6]
Berger B [6]
Mccollum CO [6]
Zhang Z [6]
Yan R [6]
Davis JH [6]
Lafrance BJ [6]
Ju B [6]
Ma H [6]
Cheng Z [6]
Normanno D [6]
Henkin G [6]
Liu F [6]
Howes SC [5]
Rice LM [5]
Westermann S [5]
Baker D [5]
Su C [5]
Cheng L [5]
Mcmanus CT [5]
Lander GC [5]
Wang H [5]
Wang Y [4]
Xie M [4]
Eshun-wilson L [4]
Cheng G [4]
Eisert RJ [4]
Zhou B [4]
Cai G [4]
Chen X [4]
Zhang S [4]
Tian Y [4]
Han P [4]
Yin J [4]
Fan J [4]
Chen X [4]
Gao GF [4]
Jiang D [4]
Zhang J [4]

Journal

Software

Microscope

Electron Source

Film or detector model

EMPIAR Experiment type

EMPIAR Image category

External links