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author:"Zalk R"

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Current Database

  • EMDB [75]

Current status

  • REL [75]

Sample type

  • Protein [59]
  • Complex [57]
  • Ligand [42]
  • Cell [10]
  • Virus [4]
  • Cellular component [3]
  • Sample [1]

Organism

  • Homo sapiens [39]
  • Oryctolagus cuniculus [26]
  • Mus musculus [6]
  • Ruminococcus bromii [5]
  • Simian virus 40 [4]
  • (no species) [4]
  • Camelus dromedarius [4]
  • Halobacterium salinarum [3]
  • Leishmania mexicana [2]
  • Lachnospira multipara [1]
  • Bacillus anthracis [1]
  • (no species) [1]
  • Agathobacter ruminis [1]
  • Anaeramoeba ignava [1]
  • Pseudobutyrivibrio sp. [1]
  • Escherichia virus t3 [1]
  • Promethearchaeia archaeon [1]
  • Listeria monocytogenes [1]
  • Magnetospirillum gryphiswaldense [1]
  • Bacteroides caccae [1]
  • Saccharomyces cerevisiae [1]
  • Roseburia intestinalis [1]
  • Bacteroides cellulosilyticus [1]
  • Caenorhabditis elegans [1]
  • Bacteroides thetaiotaomicron [1]
  • Butyrivibrio fibrisolvens [1]
  • Escherichia coli [1]
  • Wolinella succinogenes [1]

EM Method

  • Single-particle [57]
  • Tomography [10]
  • Helical reconstruction [7]
  • Subtomogram averaging [1]

Resolution

  • ≥ 2Å and < 3Å [11]
  • ≥ 3Å and < 4Å [20]
  • ≥ 4Å and < 5Å [22]
  • ≥ 5Å and < 6Å [2]
  • ≥ 6Å and < 8Å [6]
  • ≥ 8Å and < 12Å [1]
  • ≥ 12Å and < 16Å [2]
  • ≥ 20Å and < 30Å [1]

Model molecular weight

  • 50-100 kDa [2]
  • 100-250 kDa [10]
  • 250-500 kDa [3]
  • 500-1000 kDa [11]
  • 1-2 MDa [23]
  • 2-5 MDa [5]

Release Date

  • 2026 [3]
  • 2025 [13]
  • 2024 [5]
  • 2023 [11]
  • 2022 [1]
  • 2021 [8]
  • 2020 [4]
  • 2019 [4]
  • 2016 [25]
  • 2014 [1]

Author by name

  • Zalk R [75]
  • Clarke OB [26]
  • Frank J [26]
  • Grassucci RA [26]
  • Hendrickson WA [26]
  • Marks AR [26]
  • Des Georges A [26]
  • Condon KJ [25]
  • Yuan Q [25]
  • Frank GA [14]
  • Medalia O [14]
  • Mizrahi I [14]
  • Morais S [14]
  • Wimmer BH [14]
  • Zarivach R [14]
  • Guez-haddad J [7]
  • Hons M [7]
  • Khazma T [7]
  • Opatowsky Y [7]
  • Shahar A [7]
  • Isupov MN [6]
  • Meyron-holtz EG [6]
  • Abelya G [5]
  • Alon G [5]
  • Alon-zchut G [5]
  • Amit I [5]
  • Bayer EA [5]
  • Becher D [5]
  • Davidov G [5]
  • Grossman-haham I [5]
  • Huynh TT [5]
  • Izbicki B [5]
  • Levin L [5]
  • Lisibach M [5]
  • Papo N [5]
  • Pfister B [5]
  • Shagidov D [5]
  • Shaibi S [5]
  • Simoni S [5]
  • Spektor L [5]
  • Tatli M [5]
  • Todtli P [5]
  • Tovar-herrera O [5]
  • Trautwein-schult A [5]
  • Weizmann Y [5]
  • Zalutsky MR [5]
  • Dessau M [4]
  • Kler S [4]
  • Kopatz I [4]
  • Levi-kalisman Y [4]
  • Mim C [4]
  • Shkolnisky Y [4]
  • Sporny M [4]
  • Yaron A [4]
  • Zlotkin-rivkin E [4]
  • Eichler J [3]
  • Grossman A [3]
  • Mashni L [3]
  • Sain R [3]
  • Sofer S [3]
  • Upcher A [3]
  • Vershinin Z [3]
  • Weitman M [3]
  • Bose P [2]
  • Cohen-schwartz S [2]
  • Dabas H [2]
  • Dahan I [2]
  • Feng C [2]
  • Hammarlund M [2]
  • Hoelzgen F [2]
  • Kass I [2]
  • Alcalay R [1]
  • Arad E [1]
  • Asher NB [1]
  • Azulay G [1]
  • Batushansky A [1]
  • Ben-asher N [1]
  • Bernheim-groswasser A [1]
  • Bershtein S [1]
  • Borovok I [1]
  • Bou-abdallah F [1]
  • Boumaiza M [1]
  • Debs G [1]
  • Debs GE [1]
  • Ding F [1]
  • Dror S [1]
  • Elad N [1]
  • Elia N [1]
  • Engel L [1]
  • Garau G [1]
  • Gheber L [1]
  • Golan-vaishenker Y [1]
  • Goldstein-levitin A [1]
  • Grosmann-haham I [1]
  • Gueta N [1]
  • Halbi G [1]
  • Herskovits AA [1]
  • Holdengraber V [1]
  • Jartoux B [1]
  • Jelinek R [1]

Author by ORCID

  • Zalk R [27]
  • Des Georges A [26]
  • Mizrahi I [14]
  • Frank GA [14]
  • Morais S [14]
  • Wimmer BH [14]
  • Medalia O [14]
  • Zarivach R [7]
  • Hons M [6]
  • Tovar-herrera O [5]
  • Bayer EA [5]
  • Pfister B [5]
  • Zalutsky MR [5]
  • Trautwein-schult A [5]
  • Izbicki B [5]
  • Lisibach M [5]
  • Mim C [4]
  • Isupov MN [4]
  • Yaron A [4]
  • Dessau M [4]
  • Opatowsky Y [4]
  • Grossman-haham I [3]
  • Eichler J [3]
  • Vershinin Z [3]
  • Upcher A [3]
  • Grossman A [3]
  • Sofer S [3]
  • Kass I [2]
  • Dabas H [2]
  • Batushansky A [1]
  • Mazor O [1]
  • Elad N [1]
  • Cohen-schwartz S [1]
  • Asher NB [1]
  • Boumaiza M [1]
  • Siegler N [1]
  • Junglas B [1]
  • Garau G [1]
  • Jelinek R [1]
  • Pandey H [1]
  • Mancias JD [1]
  • Arad E [1]
  • Sachse C [1]
  • Goldstein-levitin A [1]
  • Singh SK [1]
  • Dror S [1]
  • Elia N [1]
  • Herskovits AA [1]
  • Engel L [1]
  • Wolf SG [1]
  • Jartoux B [1]
  • Debs G [1]
  • Yanir N [1]
  • Sindelar CV [1]
  • Shahar A [1]
  • Koubkova-yu TC [1]
  • Opatowsky Y [1]
  • Melnikov N [1]
  • Bou-abdallah F [1]
  • Stein D [1]
  • Alcalay R [1]
  • Borovok I [1]
  • Ding F [1]
  • Uebe R [1]
  • Zerbib E [1]
  • Schlussel S [1]
  • Mancia F [1]
  • Sadan M [1]
  • Gheber L [1]
  • Bernheim-groswasser A [1]
  • Nachmias D [1]
  • Popov M [1]
  • Gueta N [1]
  • Logvina N [1]

Journal

  • CELL [25]
  • NAT COMMUN [10]
  • MICROLIFE [9]
  • INT J BIOL MACROMOL [5]
  • J AM CHEM SOC [5]
  • NANOSCALE [5]
  • ELIFE [4]
  • CELL REP [2]
  • PROTEIN SCI [2]
  • ACTA CRYSTALLOGR D STRUCT BIOL [1]
  • BIORXIV [1]
  • CELL.MOL.LIFE SCI. [1]
  • EMBO J [1]
  • MBIO [1]
  • NAT MICROBIOL [1]
  • NATURE [1]
  • PNAS [1]
  • SCI ADV [1]

Software

  • RELION [36]
  • IMOD [10]
  • CRYOSPARC [9]
  • GCTF [5]
  • WARP [1]

Microscope

  • FEI POLARA 300 [41]
  • FEI TITAN KRIOS [13]
  • TFS GLACIOS [13]
  • TFS KRIOS [8]

Electron Source

  • FIELD EMISSION GUN [75]

Film or detector model

  • GATAN K2 SUMMIT 4K X 4K [49]
  • FEI FALCON IV 4K X 4K [8]
  • GATAN K3 6K X 4K [7]
  • TFS FALCON 4I 4K X 4K [5]
  • GATAN K2 QUANTUM 4K X 4K [2]
  • GATAN K3 BIOQUANTUM 6K X 4K [2]
  • GATAN K2 4K X 4K [1]
  • GATAN K3 BIOCONTINUUM 6K X 4K [1]

External links

  • PDB [75]
  • UniProt [49]
  • AlphaFold DB [47]
  • PDBe-Kb [42]
  • ChEBI [41]
  • DrugBank [41]
  • InterPro [41]
  • Gene Ontology [40]
  • Pfam [39]
  • ChEMBL [37]
  • Complex Portal [36]
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EMD-53927
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3D View
Cryo-ET of endothelial cells cultured on electrospun gelatin fibers
CryoEM
Release date: May 6, 2026
EM Method: Tomography

Tcherner Elad S, Vilensky R, Asher NB, Logvina N, Zalk R, Zussman E, Engel L

Nanoscale (2025) 17 pp. 14687-14695 [ DOI: doi:10.1039/d4nr05508j Pubmed: 40462761 ]

EMD-55773
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3D View
Leishmania mexicana secreted acid phosphatase
CryoEM
Release date: April 29, 2026
Resolution: 3.0 Å
EM Method: Single-particle
Fitted PDBs: 9tbj
Q-score: 0.543

Bose P, Dahan I, Upcher A, Zalk R, Grossman-Haham I

Protein Sci (2026) 35 pp. e70591-e70591 [ DOI: doi:10.1002/pro.70591 Pubmed: 42010818 ]

EMD-56536
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Leishmania mexicana secreted acid phosphatase at pH 5.6
CryoEM
Release date: April 29, 2026
Resolution: 3.7 Å
EM Method: Single-particle
Fitted PDBs: 28ik
Q-score: 0.46

Bose P, Dahan I, Upcher A, Zalk R, Grossman-Haham I

Protein Sci (2026) 35 pp. e70591-e70591 [ DOI: doi:10.1002/pro.70591 Pubmed: 42010818 ]

EMD-51772
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Cryo-EM structure of Heterooligomeric Bacterioferritin
CryoEM
Release date: Oct. 29, 2025
Resolution: 2.86 Å
EM Method: Single-particle
Fitted PDBs: 9h1u
Q-score: 0.6

Stein D, Jartoux B, Dror S, Uebe R, Koubkova-Yu TC, Zalk R, Shahar A, Zarivach R, Frank GA

PNAS (2026) 123 pp. e2504561123-e2504561123 [ DOI: doi:10.1073/pnas.2504561123 Pubmed: 41609675 ]

EMD-53097
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Structure of the GH13 domain of Ruminococcus bromii Amy4
CryoEM
Release date: Oct. 22, 2025
Resolution: 2.8 Å
EM Method: Single-particle
Fitted PDBs: 9qf3
Q-score: 0.48

Wimmer BH, Morais S, Amit I, Tovar-Herrera O, Tatli M, Trautwein-Schult A, Pfister B, Zalk R, Todtli P, Simoni S, Lisibach M, Levin L, Becher D, Bayer EA, Medalia O, Mizrahi I

Nat Commun (2025) 16 pp. 10763-10763 [ DOI: doi:10.1038/s41467-025-65800-1 Pubmed: 41298524 ]

EMD-53101
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Structure of the GH13 and MucBP domains of Ruminococcus bromii Amy10
CryoEM
Release date: Oct. 22, 2025
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 9qf8
Q-score: 0.443

Wimmer BH, Morais S, Amit I, Tovar-Herrera O, Tatli M, Trautwein-Schult A, Pfister B, Zalk R, Todtli P, Simoni S, Lisibach M, Levin L, Becher D, Bayer EA, Medalia O, Mizrahi I

Nat Commun (2025) 16 pp. 10763-10763 [ DOI: doi:10.1038/s41467-025-65800-1 Pubmed: 41298524 ]

EMD-53102
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Structure of the GH13 domain of Ruminococcus bromii Amy16
CryoEM
Release date: Oct. 22, 2025
Resolution: 4.6 Å
EM Method: Single-particle
Fitted PDBs: 9qf9
Q-score: 0.173

Wimmer BH, Morais S, Amit I, Tovar-Herrera O, Tatli M, Trautwein-Schult A, Pfister B, Zalk R, Todtli P, Simoni S, Lisibach M, Levin L, Becher D, Bayer EA, Medalia O, Mizrahi I

Nat Commun (2025) 16 pp. 10763-10763 [ DOI: doi:10.1038/s41467-025-65800-1 Pubmed: 41298524 ]

EMD-53103
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Structure of the GH13 and MucBP domains of Ruminococcus bromii Amy12
CryoEM
Release date: Oct. 22, 2025
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 9qfa
Q-score: 0.493

Wimmer BH, Morais S, Amit I, Tovar-Herrera O, Tatli M, Trautwein-Schult A, Pfister B, Zalk R, Todtli P, Simoni S, Lisibach M, Levin L, Becher D, Bayer EA, Medalia O, Mizrahi I

Nat Commun (2025) 16 pp. 10763-10763 [ DOI: doi:10.1038/s41467-025-65800-1 Pubmed: 41298524 ]

EMD-53104
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Ruminococcus bromii ribosome
CryoEM
Release date: Oct. 22, 2025
Resolution: 14.0 Å
EM Method: Subtomogram averaging

Wimmer BH, Morais S, Amit I, Tovar-Herrera O, Tatli M, Trautwein-Schult A, Pfister B, Zalk R, Todtli P, Simoni S, Lisibach M, Levin L, Becher D, Bayer EA, Medalia O, Mizrahi I

Nat Commun (2025) 16 pp. 10763-10763 [ DOI: doi:10.1038/s41467-025-65800-1 Pubmed: 41298524 ]

EMD-52437
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PSMA in complex with nanobody 37
CryoEM
Release date: July 23, 2025
Resolution: 2.71 Å
EM Method: Single-particle
Fitted PDBs: 9hvl
Q-score: 0.575

Alon-Zchut G, Zalk R, Huynh TT, Zalutsky MR, Weizmann Y, Zarivach R, Papo N

Int J Biol Macromol (2025) 320 pp. 145693-145693 [ Pubmed: 40609945 DOI: doi:10.1016/j.ijbiomac.2025.145693 ]

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Showing 1 - 10 of 75. Page 1 of 8
Display:
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Filter By

Current Database

  • EMDB [75]

Current status

  • REL [75]

Sample type

  • Protein [59]
  • Complex [57]
  • Ligand [42]
  • Cell [10]
  • Virus [4]
  • Cellular component [3]
  • Sample [1]

Organism

  • Homo sapiens [39]
  • Oryctolagus cuniculus [26]
  • Mus musculus [6]
  • Ruminococcus bromii [5]
  • Simian virus 40 [4]
  • (no species) [4]
  • Camelus dromedarius [4]
  • Halobacterium salinarum [3]
  • Leishmania mexicana [2]
  • Lachnospira multipara [1]
  • Bacillus anthracis [1]
  • (no species) [1]
  • Agathobacter ruminis [1]
  • Anaeramoeba ignava [1]
  • Pseudobutyrivibrio sp. [1]
  • Escherichia virus t3 [1]
  • Promethearchaeia archaeon [1]
  • Listeria monocytogenes [1]
  • Magnetospirillum gryphiswaldense [1]
  • Bacteroides caccae [1]
  • Saccharomyces cerevisiae [1]
  • Roseburia intestinalis [1]
  • Bacteroides cellulosilyticus [1]
  • Caenorhabditis elegans [1]
  • Bacteroides thetaiotaomicron [1]
  • Butyrivibrio fibrisolvens [1]
  • Escherichia coli [1]
  • Wolinella succinogenes [1]

EM Method

  • Single-particle [57]
  • Tomography [10]
  • Helical reconstruction [7]
  • Subtomogram averaging [1]

Resolution

  • ≥ 2Å and < 3Å [11]
  • ≥ 3Å and < 4Å [20]
  • ≥ 4Å and < 5Å [22]
  • ≥ 5Å and < 6Å [2]
  • ≥ 6Å and < 8Å [6]
  • ≥ 8Å and < 12Å [1]
  • ≥ 12Å and < 16Å [2]
  • ≥ 20Å and < 30Å [1]

Model molecular weight

  • 50-100 kDa [2]
  • 100-250 kDa [10]
  • 250-500 kDa [3]
  • 500-1000 kDa [11]
  • 1-2 MDa [23]
  • 2-5 MDa [5]

Release Date

  • 2026 [3]
  • 2025 [13]
  • 2024 [5]
  • 2023 [11]
  • 2022 [1]
  • 2021 [8]
  • 2020 [4]
  • 2019 [4]
  • 2016 [25]
  • 2014 [1]

Author by name

  • Zalk R [75]
  • Clarke OB [26]
  • Frank J [26]
  • Grassucci RA [26]
  • Hendrickson WA [26]
  • Marks AR [26]
  • Des Georges A [26]
  • Condon KJ [25]
  • Yuan Q [25]
  • Frank GA [14]
  • Medalia O [14]
  • Mizrahi I [14]
  • Morais S [14]
  • Wimmer BH [14]
  • Zarivach R [14]
  • Guez-haddad J [7]
  • Hons M [7]
  • Khazma T [7]
  • Opatowsky Y [7]
  • Shahar A [7]
  • Isupov MN [6]
  • Meyron-holtz EG [6]
  • Abelya G [5]
  • Alon G [5]
  • Alon-zchut G [5]
  • Amit I [5]
  • Bayer EA [5]
  • Becher D [5]
  • Davidov G [5]
  • Grossman-haham I [5]
  • Huynh TT [5]
  • Izbicki B [5]
  • Levin L [5]
  • Lisibach M [5]
  • Papo N [5]
  • Pfister B [5]
  • Shagidov D [5]
  • Shaibi S [5]
  • Simoni S [5]
  • Spektor L [5]
  • Tatli M [5]
  • Todtli P [5]
  • Tovar-herrera O [5]
  • Trautwein-schult A [5]
  • Weizmann Y [5]
  • Zalutsky MR [5]
  • Dessau M [4]
  • Kler S [4]
  • Kopatz I [4]
  • Levi-kalisman Y [4]
  • Mim C [4]
  • Shkolnisky Y [4]
  • Sporny M [4]
  • Yaron A [4]
  • Zlotkin-rivkin E [4]
  • Eichler J [3]
  • Grossman A [3]
  • Mashni L [3]
  • Sain R [3]
  • Sofer S [3]
  • Upcher A [3]
  • Vershinin Z [3]
  • Weitman M [3]
  • Bose P [2]
  • Cohen-schwartz S [2]
  • Dabas H [2]
  • Dahan I [2]
  • Feng C [2]
  • Hammarlund M [2]
  • Hoelzgen F [2]
  • Kass I [2]
  • Alcalay R [1]
  • Arad E [1]
  • Asher NB [1]
  • Azulay G [1]
  • Batushansky A [1]
  • Ben-asher N [1]
  • Bernheim-groswasser A [1]
  • Bershtein S [1]
  • Borovok I [1]
  • Bou-abdallah F [1]
  • Boumaiza M [1]
  • Debs G [1]
  • Debs GE [1]
  • Ding F [1]
  • Dror S [1]
  • Elad N [1]
  • Elia N [1]
  • Engel L [1]
  • Garau G [1]
  • Gheber L [1]
  • Golan-vaishenker Y [1]
  • Goldstein-levitin A [1]
  • Grosmann-haham I [1]
  • Gueta N [1]
  • Halbi G [1]
  • Herskovits AA [1]
  • Holdengraber V [1]
  • Jartoux B [1]
  • Jelinek R [1]

Author by ORCID

  • Zalk R [27]
  • Des Georges A [26]
  • Mizrahi I [14]
  • Frank GA [14]
  • Morais S [14]
  • Wimmer BH [14]
  • Medalia O [14]
  • Zarivach R [7]
  • Hons M [6]
  • Tovar-herrera O [5]
  • Bayer EA [5]
  • Pfister B [5]
  • Zalutsky MR [5]
  • Trautwein-schult A [5]
  • Izbicki B [5]
  • Lisibach M [5]
  • Mim C [4]
  • Isupov MN [4]
  • Yaron A [4]
  • Dessau M [4]
  • Opatowsky Y [4]
  • Grossman-haham I [3]
  • Eichler J [3]
  • Vershinin Z [3]
  • Upcher A [3]
  • Grossman A [3]
  • Sofer S [3]
  • Kass I [2]
  • Dabas H [2]
  • Batushansky A [1]
  • Mazor O [1]
  • Elad N [1]
  • Cohen-schwartz S [1]
  • Asher NB [1]
  • Boumaiza M [1]
  • Siegler N [1]
  • Junglas B [1]
  • Garau G [1]
  • Jelinek R [1]
  • Pandey H [1]
  • Mancias JD [1]
  • Arad E [1]
  • Sachse C [1]
  • Goldstein-levitin A [1]
  • Singh SK [1]
  • Dror S [1]
  • Elia N [1]
  • Herskovits AA [1]
  • Engel L [1]
  • Wolf SG [1]
  • Jartoux B [1]
  • Debs G [1]
  • Yanir N [1]
  • Sindelar CV [1]
  • Shahar A [1]
  • Koubkova-yu TC [1]
  • Opatowsky Y [1]
  • Melnikov N [1]
  • Bou-abdallah F [1]
  • Stein D [1]
  • Alcalay R [1]
  • Borovok I [1]
  • Ding F [1]
  • Uebe R [1]
  • Zerbib E [1]
  • Schlussel S [1]
  • Mancia F [1]
  • Sadan M [1]
  • Gheber L [1]
  • Bernheim-groswasser A [1]
  • Nachmias D [1]
  • Popov M [1]
  • Gueta N [1]
  • Logvina N [1]

Journal

  • CELL [25]
  • NAT COMMUN [10]
  • MICROLIFE [9]
  • INT J BIOL MACROMOL [5]
  • J AM CHEM SOC [5]
  • NANOSCALE [5]
  • ELIFE [4]
  • CELL REP [2]
  • PROTEIN SCI [2]
  • ACTA CRYSTALLOGR D STRUCT BIOL [1]
  • BIORXIV [1]
  • CELL.MOL.LIFE SCI. [1]
  • EMBO J [1]
  • MBIO [1]
  • NAT MICROBIOL [1]
  • NATURE [1]
  • PNAS [1]
  • SCI ADV [1]

Software

  • RELION [36]
  • IMOD [10]
  • CRYOSPARC [9]
  • GCTF [5]
  • WARP [1]

Microscope

  • FEI POLARA 300 [41]
  • FEI TITAN KRIOS [13]
  • TFS GLACIOS [13]
  • TFS KRIOS [8]

Electron Source

  • FIELD EMISSION GUN [75]

Film or detector model

  • GATAN K2 SUMMIT 4K X 4K [49]
  • FEI FALCON IV 4K X 4K [8]
  • GATAN K3 6K X 4K [7]
  • TFS FALCON 4I 4K X 4K [5]
  • GATAN K2 QUANTUM 4K X 4K [2]
  • GATAN K3 BIOQUANTUM 6K X 4K [2]
  • GATAN K2 4K X 4K [1]
  • GATAN K3 BIOCONTINUUM 6K X 4K [1]

External links

  • PDB [75]
  • UniProt [49]
  • AlphaFold DB [47]
  • PDBe-Kb [42]
  • ChEBI [41]
  • DrugBank [41]
  • InterPro [41]
  • Gene Ontology [40]
  • Pfam [39]
  • ChEMBL [37]
  • Complex Portal [36]