Electron Microscopy Data Bank

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author:"Yu Z"

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Current Database

Current status

Sample type

Organism

Homo sapiens [205]
Mus musculus [43]
Synthetic construct [38]
Simplexvirus humanalpha1 [13]
Escherichia coli [11]
Saccharomyces cerevisiae [9]
Salmonella enterica [8]
Xenopus laevis [8]
Salmonella enterica [8]
Human herpesvirus 1 [7]
Acinetobacter phage ap205 [7]
Sus scrofa [7]
Rattus norvegicus [6]
Thermoplasma acidophilum [6]
Severe acute respiratory syndrome coronavirus [6]
Listeria monocytogenes [5]
Pseudomonas aeruginosa [5]
Chlamydomonas reinhardtii [5]
Oryza sativa [5]
Escherichia coli [5]
Staphylococcus aureus [4]
Bacillus subtilis [4]
Oryza sativa [4]
Monkeypox virus [3]
Epstein-barr virus (strain gd1) [3]
Plasmodium vivax [3]
(no species) [3]
Caulobacter vibrioides [3]
Severe acute respiratory syndrome coronavirus [3]
Escherichia coli [3]
Escherichia coli [3]
Candida albicans [3]
Trypanosoma brucei [3]
Acinetobacter genomosp. 16bj [3]
Escherichia virus t7 [2]
Listeria monocytogenes [2]
Pseudomonas aeruginosa [2]
Okubovirus spo1 [2]
Desulfovirgula thermocuniculi [2]
Arabidopsis thaliana [2]
Xenopus calcaratus [2]
Saccharomyces cerevisiae [2]
Escherichia coli [2]
Drosophila melanogaster [2]
Cebevirus halophobicum [2]
Lama glama [2]
Dabie bandavirus [1]
Escherichia phage lambda [1]
Pseudomonas phage pp7 [1]
Bacillus subtilis [1]
Enterobacteria phage sfi [1]
Streptococcus pyogenes [1]
Pandoravirus salinus [1]
Invertebrate iridescent virus 6 [1]
Mycobacterium tuberculosis [1]
Nipah virus [1]
Vicugna pacos [1]
Plasmodium falciparum [1]
Mycetohabitans rhizoxinica [1]
Conus marmoreus [1]
Komagataella pastoris [1]
Plasmodium falciparum [1]
Escherichia coli [1]
Bacteria abnormis [1]
Conus magus [1]
Escherichia coli [1]
Bos taurus [1]
Salmonella enterica [1]

EM Method

Resolution

Model molecular weight

Release Date

Author by name

Yu Z [412]
Xu Y [56]
Li Y [50]
Yan R [50]
Li Z [49]
Wang Y [48]
Li J [47]
Agard DA [46]
Shiozaki M [46]
Wang M [45]
Chen X [43]
Wang X [41]
Wu Z [41]
Liu Y [40]
Zhang J [39]
Wang F [38]
Cheng Y [37]
Ren Y [36]
Zhao X [36]
Zhao Y [36]
Vale RD [35]
Chen Z [34]
Hong C [34]
Qi Y [34]
Guo C [33]
Hou H [33]
Lishko PV [33]
Skinner WM [33]
Yang H [33]
Zhao D [33]
Zhao S [33]
Shiozak M [32]
Skinner W [32]
Hu J [30]
Liu W [29]
Worrall LJ [27]
Greenan GA [26]
Greenan AG [25]
Abraham J [24]
Strynadka NCJ [24]
Yu J [24]
Zhang X [24]
Zhang Y [24]
Zhao J [24]
Ludtke SJ [23]
Vuckovic M [23]
He S [22]
Li N [22]
Yang P [21]
Coen DM [20]
Liu CP [20]
Matthies D [20]
Shekhar M [20]
Xu RM [20]
Yu C [20]
Chen Q [19]
Dong Y [18]
Huang RK [18]
Li G [18]
Li W [18]
Wang L [18]
Yang S [18]
Zhang Z [18]
Zhu B [18]
Hu S [17]
Wu Y [17]
Yang Y [17]
Atkinson CE [16]
Fan X [16]
Kranzusch PJ [16]
Loparo JJ [16]
Lu J [16]
Sathyanarayana P [16]
Su J [16]
Wang Z [16]
Yang B [16]
Zeng L [16]
Huang B [15]
Yu H [15]
Abskharon R [14]
Boyer DR [14]
Cheng X [14]
Chou HT [14]
Dolinsky JL [14]
Eisenberg DS [14]
Feigon J [14]
Ge P [14]
Hou K [14]
Jiang D [14]
Jiang YX [14]
Lutter L [14]
Pi J [14]
Sawaya MR [14]
Bai Q [13]
Chen M [13]
Chio US [13]
Das B [13]
Deng W [13]
Huang Z [13]
Ji C [13]

Author by ORCID

Yu Z [52]
Xu Y [46]
Shiozaki M [42]
Agard DA [41]
Yu Z [36]
Zhao Y [36]
Yu Z [32]
Skinner WM [32]
Chen Z [32]
Lishko PV [32]
Liu Y [29]
Wang X [27]
Li J [27]
Hou H [27]
Qi Y [27]
Liu W [27]
Zhao D [27]
Chen X [27]
Yang H [27]
Li Y [27]
Vale RD [27]
Li Z [27]
Cheng Y [21]
Abraham J [21]
Zhang X [18]
Dong Y [18]
Zhu B [18]
Zhao J [17]
Ludtke SJ [16]
Zhang J [16]
Zeng L [16]
Wang Z [16]
Wang F [15]
Huang B [15]
Wang Y [14]
Strynadka NCJ [14]
Jiang D [14]
Thongchol J [13]
Zhang Z [12]
Hu J [12]
Liu CP [12]
Li W [12]
Hou P [12]
Xu RM [12]
Yang N [12]
Zhang Z [12]
Xiong J [12]
Wang M [12]
Li G [12]
Ding D [12]
Yu J [12]
Song A [12]
Gao Y [11]
Matthies D [11]
Chio US [11]
Wang Y [11]
Yang S [11]
Xing Z [11]
Villa E [11]
Jin M [11]
Meng Y [10]
Wu D [10]
Huang Z [9]
Chen M [9]
Yu Z [8]
Young R [8]
Yan R [8]
Haas KM [8]
Zeytuni N [8]
Chamakura K [8]
Yu H [8]
Theodore M [8]
Wang F [8]
Meng R [8]
Lin J [7]
Lou J [7]
Zhang XC [7]
Lutter L [7]
Mukherjee P [7]
Ge P [7]
Boyer DR [7]
Lu J [7]
Gao H [7]
Shen EZ [7]
Dolinsky JL [7]
Yang Y [7]
Sawaya MR [7]
Jiang YX [7]
Cheng X [7]
Eisenberg DS [7]
Baron JL [7]
Feigon J [7]
Hou K [7]
Zhang Y [7]
Liu Y [7]
Pi J [7]
Li J [6]
Armache JP [6]
Mao Y [6]
Rosen MK [6]

Journal

Software

Microscope

Electron Source

Film or detector model

EMPIAR Experiment type

EMPIAR Image category

External links

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Showing 1 - 10 of 417. Page 1 of 42

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EMD-49747

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MPXV replisome bound to ssDNA

CryoEM

Release date: Sept. 2, 2026
Resolution: 4.1 Å
EM Method: Single-particle
Fitted PDBs: 9nsp

Q-score: 0.152
Similar entry percentile: 4%

Yu Z, Sathyanarayana P, Tan JMJT, Hu S, Fan X, Gao A, Kranzusch PJ, Loparo JJ, Abraham J

Nature (2026) [ DOI: doi:10.1038/s41586-026-10937-2 ]

EMD-75504

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MPXV replisome bound to forked DNA

CryoEM

Release date: Sept. 2, 2026
Resolution: 6.5 Å
EM Method: Single-particle
Fitted PDBs: 10wp

Q-score: -0.009
Similar entry percentile: 0%

Yu Z, Sathyanarayana P, Tan JMJT, Hu S, Fan X, Gao A, Kranzusch PJ, Loparo JJ, Abraham J

Nature (2026) [ DOI: doi:10.1038/s41586-026-10937-2 ]

EMD-76148

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MPXV polymerase-E5 primase core complex

CryoEM

Release date: Sept. 2, 2026
Resolution: 3.8 Å
EM Method: Single-particle
Fitted PDBs: 11wz

Q-score: 0.209
Similar entry percentile: 4%

Yu Z, Sathyanarayana P, Tan JMJT, Hu S, Fan X, Gao A, Kranzusch PJ, Loparo JJ, Abraham J

Nature (2026) [ DOI: doi:10.1038/s41586-026-10937-2 ]

EMD-49668

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Cryo electron microscopic analysis of the adduct of syringolin analog with the Mtb 20S proteasome

CryoEM

Release date: Aug. 26, 2026
Resolution: 2.16 Å
EM Method: Single-particle
Fitted PDBs: 9nql

Q-score: 0.689
Similar entry percentile: 86%

Gu X, Rowheder PJ, Yu Z, Mohapatra A, Lun S, Jiang X, Li D, Yan NL, Detomasi TC, Pomares DFT, Chen Y, Gestwicki JE, Lin G, Bishai WR, Ernst JD, Cheng Y, Craik CS, Sello JK

ACS Chem Biol (2026) [ DOI: doi:10.1021/acschembio.6c00448 ]

EMD-65044

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Structure of SARS-CoV-2 Spike in complex with antibodies S309 and CT1-5.

CryoEM

Release date: June 3, 2026
Resolution: 3.24 Å
EM Method: Single-particle

Zhou L, Yu Z, Lin S, Jiang Y, Gao J, Ma Y, Jiang W, Liang S, Chen Y, Zhang Y, Lin Y, Liang M, Dai J, Zhang L, Xiao Y, Li T, Kong Z, Liu Q, He S, Wu Y, Yuan Q, Liu F, Zhang J, Zheng Q, Yu H, Gu Y, Li S, Xia N

Cell Rep (2026) 45 pp. 117582-117582 [ DOI: doi:10.1016/j.celrep.2026.117582 Pubmed: 42319828 ]

EMD-65049

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Structure of SARS-CoV-2 Spike in complex with antibodies S309 and CT1-1

CryoEM

Release date: June 3, 2026
Resolution: 2.97 Å
EM Method: Single-particle

Cell Rep (2026) 45 pp. 117582-117582 [ DOI: doi:10.1016/j.celrep.2026.117582 Pubmed: 42319828 ]

EMD-66051

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Local refinement region of SARS-CoV-2 spike RBD in complex with antibodies CT1-5.

CryoEM

Release date: June 3, 2026
Resolution: 3.6 Å
EM Method: Single-particle
Fitted PDBs: 9wla

Q-score: 0.5
Similar entry percentile: 84%

Cell Rep (2026) 45 pp. 117582-117582 [ DOI: doi:10.1016/j.celrep.2026.117582 Pubmed: 42319828 ]

EMD-66052

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Local refinement region of SARS-CoV-2 spike RBD in complex with antibodies S309 and CT1-1.

CryoEM

Release date: June 3, 2026
Resolution: 3.74 Å
EM Method: Single-particle
Fitted PDBs: 9wlb

Q-score: 0.494
Similar entry percentile: 90%

Cell Rep (2026) 45 pp. 117582-117582 [ DOI: doi:10.1016/j.celrep.2026.117582 Pubmed: 42319828 ]

EMD-75574

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gRNAde designed RNA molecule

CryoEM

Release date: May 27, 2026
Resolution: 2.9 Å
EM Method: Single-particle
Fitted PDBs: 10zt

Q-score: 0.512
Similar entry percentile: 55%

Townley J, Kladwang W, Baker D, Blair HM, Choe CA, El Nesr G, Favor A, Fisker E, Haack DB, He S, Hingey J, Huang PS, Huang R, Joshi CK, Karagianes T, Kubaney A, Lio P, Mancino A, Romano J, Rudolfs B, Spellmon N, Toor N, Verma J, Wu V, Yu Z, Participants E, Das R

Science (2026) 393 pp. 931-937 [ DOI: doi:10.1126/science.aeg6829 Pubmed: 42658941 ]

EMD-75575

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MPNN-fixbb designed RNA molecule

CryoEM

Release date: May 27, 2026
Resolution: 4.0 Å
EM Method: Single-particle
Fitted PDBs: 10zu

Q-score: 0.34
Similar entry percentile: 37%

Science (2026) 393 pp. 931-937 [ DOI: doi:10.1126/science.aeg6829 Pubmed: 42658941 ]

Sort by: Download

Showing 1 - 10 of 417. Page 1 of 42

Display:

Statistics

Filter By

Current Database

Current status

Sample type

Organism

Homo sapiens [205]
Mus musculus [43]
Synthetic construct [38]
Simplexvirus humanalpha1 [13]
Escherichia coli [11]
Saccharomyces cerevisiae [9]
Salmonella enterica [8]
Xenopus laevis [8]
Salmonella enterica [8]
Human herpesvirus 1 [7]
Acinetobacter phage ap205 [7]
Sus scrofa [7]
Rattus norvegicus [6]
Thermoplasma acidophilum [6]
Severe acute respiratory syndrome coronavirus [6]
Listeria monocytogenes [5]
Pseudomonas aeruginosa [5]
Chlamydomonas reinhardtii [5]
Oryza sativa [5]
Escherichia coli [5]
Staphylococcus aureus [4]
Bacillus subtilis [4]
Oryza sativa [4]
Monkeypox virus [3]
Epstein-barr virus (strain gd1) [3]
Plasmodium vivax [3]
(no species) [3]
Caulobacter vibrioides [3]
Severe acute respiratory syndrome coronavirus [3]
Escherichia coli [3]
Escherichia coli [3]
Candida albicans [3]
Trypanosoma brucei [3]
Acinetobacter genomosp. 16bj [3]
Escherichia virus t7 [2]
Listeria monocytogenes [2]
Pseudomonas aeruginosa [2]
Okubovirus spo1 [2]
Desulfovirgula thermocuniculi [2]
Arabidopsis thaliana [2]
Xenopus calcaratus [2]
Saccharomyces cerevisiae [2]
Escherichia coli [2]
Drosophila melanogaster [2]
Cebevirus halophobicum [2]
Lama glama [2]
Dabie bandavirus [1]
Escherichia phage lambda [1]
Pseudomonas phage pp7 [1]
Bacillus subtilis [1]
Enterobacteria phage sfi [1]
Streptococcus pyogenes [1]
Pandoravirus salinus [1]
Invertebrate iridescent virus 6 [1]
Mycobacterium tuberculosis [1]
Nipah virus [1]
Vicugna pacos [1]
Plasmodium falciparum [1]
Mycetohabitans rhizoxinica [1]
Conus marmoreus [1]
Komagataella pastoris [1]
Plasmodium falciparum [1]
Escherichia coli [1]
Bacteria abnormis [1]
Conus magus [1]
Escherichia coli [1]
Bos taurus [1]
Salmonella enterica [1]

EM Method

Resolution

Model molecular weight

Release Date

Author by name

Yu Z [412]
Xu Y [56]
Li Y [50]
Yan R [50]
Li Z [49]
Wang Y [48]
Li J [47]
Agard DA [46]
Shiozaki M [46]
Wang M [45]
Chen X [43]
Wang X [41]
Wu Z [41]
Liu Y [40]
Zhang J [39]
Wang F [38]
Cheng Y [37]
Ren Y [36]
Zhao X [36]
Zhao Y [36]
Vale RD [35]
Chen Z [34]
Hong C [34]
Qi Y [34]
Guo C [33]
Hou H [33]
Lishko PV [33]
Skinner WM [33]
Yang H [33]
Zhao D [33]
Zhao S [33]
Shiozak M [32]
Skinner W [32]
Hu J [30]
Liu W [29]
Worrall LJ [27]
Greenan GA [26]
Greenan AG [25]
Abraham J [24]
Strynadka NCJ [24]
Yu J [24]
Zhang X [24]
Zhang Y [24]
Zhao J [24]
Ludtke SJ [23]
Vuckovic M [23]
He S [22]
Li N [22]
Yang P [21]
Coen DM [20]
Liu CP [20]
Matthies D [20]
Shekhar M [20]
Xu RM [20]
Yu C [20]
Chen Q [19]
Dong Y [18]
Huang RK [18]
Li G [18]
Li W [18]
Wang L [18]
Yang S [18]
Zhang Z [18]
Zhu B [18]
Hu S [17]
Wu Y [17]
Yang Y [17]
Atkinson CE [16]
Fan X [16]
Kranzusch PJ [16]
Loparo JJ [16]
Lu J [16]
Sathyanarayana P [16]
Su J [16]
Wang Z [16]
Yang B [16]
Zeng L [16]
Huang B [15]
Yu H [15]
Abskharon R [14]
Boyer DR [14]
Cheng X [14]
Chou HT [14]
Dolinsky JL [14]
Eisenberg DS [14]
Feigon J [14]
Ge P [14]
Hou K [14]
Jiang D [14]
Jiang YX [14]
Lutter L [14]
Pi J [14]
Sawaya MR [14]
Bai Q [13]
Chen M [13]
Chio US [13]
Das B [13]
Deng W [13]
Huang Z [13]
Ji C [13]

Author by ORCID

Yu Z [52]
Xu Y [46]
Shiozaki M [42]
Agard DA [41]
Yu Z [36]
Zhao Y [36]
Yu Z [32]
Skinner WM [32]
Chen Z [32]
Lishko PV [32]
Liu Y [29]
Wang X [27]
Li J [27]
Hou H [27]
Qi Y [27]
Liu W [27]
Zhao D [27]
Chen X [27]
Yang H [27]
Li Y [27]
Vale RD [27]
Li Z [27]
Cheng Y [21]
Abraham J [21]
Zhang X [18]
Dong Y [18]
Zhu B [18]
Zhao J [17]
Ludtke SJ [16]
Zhang J [16]
Zeng L [16]
Wang Z [16]
Wang F [15]
Huang B [15]
Wang Y [14]
Strynadka NCJ [14]
Jiang D [14]
Thongchol J [13]
Zhang Z [12]
Hu J [12]
Liu CP [12]
Li W [12]
Hou P [12]
Xu RM [12]
Yang N [12]
Zhang Z [12]
Xiong J [12]
Wang M [12]
Li G [12]
Ding D [12]
Yu J [12]
Song A [12]
Gao Y [11]
Matthies D [11]
Chio US [11]
Wang Y [11]
Yang S [11]
Xing Z [11]
Villa E [11]
Jin M [11]
Meng Y [10]
Wu D [10]
Huang Z [9]
Chen M [9]
Yu Z [8]
Young R [8]
Yan R [8]
Haas KM [8]
Zeytuni N [8]
Chamakura K [8]
Yu H [8]
Theodore M [8]
Wang F [8]
Meng R [8]
Lin J [7]
Lou J [7]
Zhang XC [7]
Lutter L [7]
Mukherjee P [7]
Ge P [7]
Boyer DR [7]
Lu J [7]
Gao H [7]
Shen EZ [7]
Dolinsky JL [7]
Yang Y [7]
Sawaya MR [7]
Jiang YX [7]
Cheng X [7]
Eisenberg DS [7]
Baron JL [7]
Feigon J [7]
Hou K [7]
Zhang Y [7]
Liu Y [7]
Pi J [7]
Li J [6]
Armache JP [6]
Mao Y [6]
Rosen MK [6]

Journal

Software

Microscope

Electron Source

Film or detector model

EMPIAR Experiment type

EMPIAR Image category

External links