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author:"Trnka MJ"

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Current Database

  • EMDB [7]

Current status

  • REL [7]

Sample type

  • Complex [7]
  • DNA [3]
  • Protein [3]

Organism

  • Saccharomyces cerevisiae [4]
  • Homo sapiens [3]

EM Method

  • Single-particle [7]

Resolution

  • ≥ 3Å and < 4Å [3]
  • ≥ 8Å and < 12Å [1]
  • ≥ 12Å and < 16Å [1]
  • ≥ 16Å and < 20Å [1]
  • ≥ 20Å and < 30Å [1]

Model molecular weight

  • 1-2 MDa [1]
  • 2-5 MDa [1]

Release Date

  • 2020 [3]
  • 2017 [1]
  • 2016 [3]

Author by name

  • Burlingame AL [7]
  • Trnka MJ [7]
  • Anghel SA [3]
  • Bushnell DA [3]
  • Davis RE [3]
  • Fuller JR [3]
  • Hu H [3]
  • Keenan RJ [3]
  • Kornberg RD [3]
  • Mattei PJ [3]
  • Mcgilvray PT [3]
  • Robinson PJ [3]
  • Sundaram A [3]
  • Zhong F [3]
  • Cheng Y [1]
  • Echeverria I [1]
  • Johnston JB [1]
  • Narlikar GJ [1]
  • Palovcak E [1]
  • Sali A [1]
  • Stoddard CI [1]
  • Zhou CY [1]

Author by ORCID

  • Trnka MJ [7]
  • Mcgilvray PT [3]
  • Fuller JR [3]
  • Keenan RJ [3]
  • Cheng Y [1]
  • Echeverria I [1]

Journal

  • CELL [3]
  • ELIFE [3]
  • CELL REP [1]

Software

  • RELION [6]
  • GCTF [3]
  • CTFFIND [2]
  • CFTFIND [1]

Microscope

  • FEI TITAN KRIOS [4]
  • FEI TECNAI F20 [3]

Electron Source

  • FIELD EMISSION GUN [7]

Film or detector model

  • GATAN K3 6K X 4K [3]
  • GATAN ULTRASCAN 4000 4K X 4K [3]
  • GATAN K2 SUMMIT 4K X 4K [1]

External links

  • PDB [7]
  • AlphaFold DB [1]
  • Gene Ontology [1]
  • InterPro [1]
  • PDBe-Kb [1]
  • Pfam [1]
  • UniProt [1]
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EMD-21426
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Single Particle Cryo-EM Structure of the Natively Isolated Sec61 complex, TMCO1, Nicalin, TMEM147, and CCDC47 Containing Translocon
CryoEM
Release date: Sept. 2, 2020
Resolution: 3.84 Å
EM Method: Single-particle

McGilvray PT, Anghel SA, Sundaram A, Zhong F, Trnka MJ, Fuller JR, Hu H, Burlingame AL, Keenan RJ

eLife (2020) 9 [ DOI: doi:10.7554/eLife.56889 Pubmed: 32820719 ]

EMD-21427
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Single Particle Cryo-EM Structure of the Natively Isolated Sec61, TMCO1, Nicalin, TMEM147, and CCDC47 Containing Ribosome-Translocon Complex
CryoEM
Release date: Sept. 2, 2020
Resolution: 3.4 Å
EM Method: Single-particle

McGilvray PT, Anghel SA, Sundaram A, Zhong F, Trnka MJ, Fuller JR, Hu H, Burlingame AL, Keenan RJ

eLife (2020) 9 [ DOI: doi:10.7554/eLife.56889 Pubmed: 32820719 ]

EMD-21435
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Single Particle Cryo-EM Structure of the Natively Isolated Sec61, TMCO1, Nicalin, TMEM147, and CCDC47 Containing Ribosome-Translocon Complex After Focused Refinement with Local Angular Searches
CryoEM
Release date: Sept. 2, 2020
Resolution: 3.8 Å
EM Method: Single-particle
Fitted PDBs: 6w6l
Q-score: 0.291
Similar entry percentile: 14%

McGilvray PT, Anghel SA, Sundaram A, Zhong F, Trnka MJ, Fuller JR, Hu H, Burlingame AL, Keenan RJ

eLife (2020) 9 [ DOI: doi:10.7554/eLife.56889 Pubmed: 32820719 ]

EMD-8696
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Regulation of Rvb1/Rvb2 by a domain within the INO80 chromatin remodeling complex implicates the yeast Rvbs as protein assembly chaperones
CryoEM
Release date: June 7, 2017
Resolution: 9.6 Å
EM Method: Single-particle

Zhou CY, Stoddard CI, Johnston JB, Trnka MJ, Echeverria I, Palovcak E, Sali A, Burlingame AL, Cheng Y, Narlikar GJ

Cell Rep (2017) 19 pp. 2033-2044 [ Pubmed: 28591576 DOI: doi:10.1016/j.celrep.2017.05.029 ]

EMD-8305
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Mediator-RNA Polymerase II Pre-Initiation Complex Delta Mediator Tail Focused Refinement
CryoEM
Release date: Sept. 14, 2016
Resolution: 15.3 Å
EM Method: Single-particle
Fitted PDBs: 5sva
Q-score: 0.049
Similar entry percentile: 53%

Robinson PJ, Trnka MJ, Bushnell DA, Davis RE, Mattei PJ, Burlingame AL, Kornberg RD

Cell (2016) 166 pp. 1411-1422.e16 [ Pubmed: 27610567 DOI: doi:10.1016/j.cell.2016.08.050 ]

EMD-8307
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Mediator-RNA Polymerase II Pre-Initiation Complex Delta TFIIE-IIH Focused refinement
CryoEM
Release date: Sept. 14, 2016
Resolution: 16.8 Å
EM Method: Single-particle

Robinson PJ, Trnka MJ, Bushnell DA, Davis RE, Mattei PJ, Burlingame AL, Kornberg RD

Cell (2016) 166 pp. 1411-1422.e16 [ Pubmed: 27610567 DOI: doi:10.1016/j.cell.2016.08.050 ]

EMD-8308
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Mediator-RNA Polymerase II Pre-Initiation Complex
CryoEM
Release date: Sept. 14, 2016
Resolution: 21.9 Å
EM Method: Single-particle

Robinson PJ, Trnka MJ, Bushnell DA, Davis RE, Mattei PJ, Burlingame AL, Kornberg RD

Cell (2016) 166 pp. 1411-1422.e16 [ Pubmed: 27610567 DOI: doi:10.1016/j.cell.2016.08.050 ]

Sort by: Download
Showing 1 - 7 of 7. Page 1 of 1
Display:
Statistics
×

Download


Preview 10 entries View All Download file

Filter By

Current Database

  • EMDB [7]

Current status

  • REL [7]

Sample type

  • Complex [7]
  • DNA [3]
  • Protein [3]

Organism

  • Saccharomyces cerevisiae [4]
  • Homo sapiens [3]

EM Method

  • Single-particle [7]

Resolution

  • ≥ 3Å and < 4Å [3]
  • ≥ 8Å and < 12Å [1]
  • ≥ 12Å and < 16Å [1]
  • ≥ 16Å and < 20Å [1]
  • ≥ 20Å and < 30Å [1]

Model molecular weight

  • 1-2 MDa [1]
  • 2-5 MDa [1]

Release Date

  • 2020 [3]
  • 2017 [1]
  • 2016 [3]

Author by name

  • Burlingame AL [7]
  • Trnka MJ [7]
  • Anghel SA [3]
  • Bushnell DA [3]
  • Davis RE [3]
  • Fuller JR [3]
  • Hu H [3]
  • Keenan RJ [3]
  • Kornberg RD [3]
  • Mattei PJ [3]
  • Mcgilvray PT [3]
  • Robinson PJ [3]
  • Sundaram A [3]
  • Zhong F [3]
  • Cheng Y [1]
  • Echeverria I [1]
  • Johnston JB [1]
  • Narlikar GJ [1]
  • Palovcak E [1]
  • Sali A [1]
  • Stoddard CI [1]
  • Zhou CY [1]

Author by ORCID

  • Trnka MJ [7]
  • Mcgilvray PT [3]
  • Fuller JR [3]
  • Keenan RJ [3]
  • Cheng Y [1]
  • Echeverria I [1]

Journal

  • CELL [3]
  • ELIFE [3]
  • CELL REP [1]

Software

  • RELION [6]
  • GCTF [3]
  • CTFFIND [2]
  • CFTFIND [1]

Microscope

  • FEI TITAN KRIOS [4]
  • FEI TECNAI F20 [3]

Electron Source

  • FIELD EMISSION GUN [7]

Film or detector model

  • GATAN K3 6K X 4K [3]
  • GATAN ULTRASCAN 4000 4K X 4K [3]
  • GATAN K2 SUMMIT 4K X 4K [1]

External links

  • PDB [7]
  • AlphaFold DB [1]
  • Gene Ontology [1]
  • InterPro [1]
  • PDBe-Kb [1]
  • Pfam [1]
  • UniProt [1]