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author:"Toso DB"

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Current Database

  • EMDB [18]
  • EMPIAR [7]

Current status

  • REL [25]

Sample type

  • Complex [14]
  • Protein [11]
  • Ligand [9]
  • Tissue [4]
  • Other [1]

Organism

  • Homo sapiens [11]
  • Severe acute respiratory syndrome coronavirus [4]
  • Sus scrofa [4]

EM Method

  • Single-particle [14]
  • Helical reconstruction [4]

Resolution

  • ≥ 2Å and < 3Å [3]
  • ≥ 3Å and < 4Å [10]
  • ≥ 4Å and < 5Å [4]
  • ≥ 6Å and < 8Å [1]

Model molecular weight

  • 50-100 kDa [2]
  • 100-250 kDa [3]
  • 250-500 kDa [1]
  • 500-1000 kDa [2]
  • 5-10 MDa [2]

Release Date

  • 2021 [2]
  • 2020 [12]
  • 2019 [11]

Author by name

  • Toso DB [24]
  • Nogales E [16]
  • Greber BJ [12]
  • Brohawn SG [8]
  • Fang J [8]
  • Hoel CM [8]
  • Kern DM [8]
  • Kotecha A [8]
  • Bautista DM [7]
  • Mali SS [7]
  • Remis JP [7]
  • Sorum B [7]
  • Sridharan S [7]
  • Toso D [7]
  • Bonomi M [4]
  • Eshun-wilson L [4]
  • Fraser JS [4]
  • Iavarone AT [4]
  • Lim K [4]
  • Lohr T [4]
  • Nachury MV [4]
  • Perez-bertoldi JM [4]
  • Portran D [4]
  • Vendruscolo M [4]
  • Zhang R [4]
  • Fromm SA [1]
  • Hurley JH [1]
  • Remis J [1]
  • Su M-Y [1]
  • Su MY [1]

Author by ORCID

  • Nogales E [13]
  • Greber BJ [9]
  • Sorum B [4]
  • Brohawn SG [4]
  • Eshun-wilson L [4]
  • Kern DM [4]
  • Hoel CM [4]
  • Kotecha A [4]
  • Bonomi M [4]
  • Lohr T [4]
  • Nachury MV [4]
  • Perez-bertoldi JM [2]
  • Hurley JH [1]
  • Fromm SA [1]
  • Su MY [1]

Journal

  • BIORXIV [8]
  • ELIFE [8]
  • PNAS [8]
  • NAT STRUCT MOL BIOL [4]
  • NAT COMMUN [1]

Software

  • RELION [9]
  • GCTF [6]
  • EMAN [4]
  • FREALIGN [4]
  • APPION [3]
  • CRYOSPARC [3]
  • CTFFIND [2]

Microscope

  • FEI TITAN KRIOS [13]
  • FEI TALOS ARCTICA [5]

Electron Source

  • FIELD EMISSION GUN [18]

Film or detector model

  • GATAN K2 SUMMIT 4K X 4K [11]
  • GATAN K3 6K X 4K [6]
  • FEI FALCON IV 4K X 4K [1]

EMPIAR Experiment type

  • EMDB [7]

EMPIAR Image category

  • MICROGRAPHS - MULTIFRAME [7]

External links

  • Gene Ontology [10]
  • InterPro [10]
  • PDB [10]
  • PDBe-Kb [10]
  • Pfam [10]
  • UniProt [10]
  • AlphaFold DB [9]
  • ChEMBL [9]
  • ChEBI [8]
  • DrugBank [8]
  • EMDB [7]
  • EMPIAR [7]
  • Complex Portal [5]
  • CATH [3]
  • SCOP2 [1]
Sort by: Download
Showing 1 - 10 of 25. Page 1 of 3
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EMD-23827
Download Map
3D View
Structure of C9orf72:SMCR8:WDR41 in complex with ARF1
Release date: June 23, 2021
Resolution: 3.94 Å
EM Method: Single-particle
Fitted PDBs: 7mge
Q-score: 0.345

Su MY, Fromm SA, Remis J, Toso DB, Hurley JH

Nat Commun (2021) 12 pp. 3786-3786 [ Pubmed: 34145292 DOI: doi:10.1038/s41467-021-24081-0 ]

EMPIAR-10612
Related EMDB
EMD-22898
High-resolution SARS-CoV-2 ORF3a dimer in an MSP1E3D1 lipid nanodisc
Release date: Feb. 5, 2021
Dataset size: 3.2 TB
Experiment type: EMDB

Kern DM, Sorum B, Hoel CM, Sridharan S, Remis JP, Toso DB, Brohawn SG

bioRxiv (2020) [ DOI: 10.1101/2020.06.17.156554 ]

Image sets:
  • Unaligned movies in EER format of SARS-CoV-2 3a in MSP1E3D1 lipid nanodiscs - 1449 frames
  • Unaligned movies in EER format of SARS-CoV-2 3a in MSP1E3D1 lipid nanodiscs - 1379 frames
EMD-22898
Download Map
3D View
Raw data
EMPIAR-10612
Cryo-EM structure of SARS-CoV-2 ORF3a
Release date: Nov. 18, 2020
Resolution: 2.08 Å
EM Method: Single-particle
Fitted PDBs: 7kjr
Q-score: 0.686

Kern DM, Sorum B, Mali SS, Hoel CM, Sridharan S, Remis JP, Toso DB, Kotecha A, Bautista DM, Brohawn SG

Nat Struct Mol Biol (2021) 28 pp. 573-582 [ Pubmed: 34158638 DOI: doi:10.1038/s41594-021-00619-0 ]

EMPIAR-10431
Related EMDB
EMD-22123
Single-particle cryo-EM of the human CDK-activating kinase in complex with ATP-gamma-S
Release date: Oct. 2, 2020
Dataset size: 3.5 TB
Experiment type: EMDB

Greber BJ, Perez-Bertoldi JM, Lim K, Iavarone AT, Toso DB, Nogales E

Proc. Natl. Acad. Sci. U.S.A. (2020) [ DOI: 10.1073/pnas.2009627117 Pubmed: 32855301 ]

Image sets:
  • Unaligned movies of human CAK, dataset 2
  • Unaligned movies of human CAK, dataset 1
EMPIAR-10438
Related EMDB
EMD-22131
Single-particle cryo-EM of the human CDK-activating kinase in complex with THZ1
Release date: Sept. 28, 2020
Dataset size: 2.4 TB
Experiment type: EMDB

Greber BJ, Perez-Bertoldi JM, Lim K, Iavarone AT, Toso DB, Nogales E

Proc. Natl. Acad. Sci. U.S.A. (2020) [ DOI: 10.1073/pnas.2009627117 Pubmed: 32855301 ]

Image sets:
  • Unaligned movies of human CAK-THZ1
EMD-22123
Download Map
3D View
Raw data
EMPIAR-10431
Structure of the human CDK-activating kinase
Release date: Sept. 9, 2020
Resolution: 2.8 Å
EM Method: Single-particle
Fitted PDBs: 6xbz
Q-score: 0.57

Greber BJ, Perez-Bertoldi JM, Lim K, Iavarone AT, Toso DB, Nogales E

PNAS (2020) 117 pp. 22849-22857 [ Pubmed: 32855301 DOI: doi:10.1073/pnas.2009627117 ]

EMD-22131
Download Map
3D View
Raw data
EMPIAR-10438
Structure of the human CAK in complex with THZ1
Release date: Sept. 9, 2020
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 6xd3
Q-score: 0.504

Greber BJ, Perez-Bertoldi JM, Lim K, Iavarone AT, Toso DB, Nogales E

PNAS (2020) 117 pp. 22849-22857 [ Pubmed: 32855301 DOI: doi:10.1073/pnas.2009627117 ]

EMPIAR-10430
Related EMDB
EMD-0452
Phase-plate cryo-EM of human TFIIH
Release date: July 6, 2020
Dataset size: 9.2 TB
Experiment type: EMDB

Greber BJ, Toso DB, Fang J, Nogales E

eLife (2019) 8 [ Pubmed: 30860024 DOI: 10.7554/eLife.44771 ]

Image sets:
  • Unaligned movies of human TFIIH, using the Volta phase plate, dataset 4
  • Unaligned movies of human TFIIH, using the Volta phase plate, dataset 3
  • Unaligned movies of human TFIIH, using the Volta phase plate, dataset 1
  • Unaligned movies of human TFIIH, using the Volta phase plate, dataset 5
  • Unaligned movies of human TFIIH, using the Volta phase plate, dataset 2
  • Unaligned movies of human TFIIH, using the Volta phase plate, dataset 6
[Show more]
EMPIAR-10439
Related EMDB
EMD-22136
SARS-CoV-2 ORF3a dimer in an MSP1E3D1 lipid nanodisc
Release date: June 19, 2020
Dataset size: 4.4 TB
Experiment type: EMDB

Kern DM, Sorum B, Mali SS, Hoel CM, Sridharan S, Remis JP, Toso DB, Kotecha A, Bautista DM, Brohawn SG

bioRxiv (2020) [ DOI: 10.1101/2020.06.17.156554 ]

Image sets:
  • Unaligned multi-frame movies of SARS-CoV-2 ORF3a dimer in an MSP1E3D1 lipid nanodisc
EMPIAR-10440
Related EMDB
EMD-22139
SARS-CoV-2 ORF3a dimer with added Emodin in an MSP1E3D1 lipid nanodisc
Release date: June 19, 2020
Dataset size: 4.5 TB
Experiment type: EMDB

Kern DM, Sorum B, Mali SS, Hoel CM, Sridharan S, Remis JP, Toso DB, Kotecha A, Bautista DM, Brohawn SG

bioRxiv (2020) [ DOI: 10.1101/2020.06.17.156554 ]

Image sets:
  • Unaligned multi-frame movies of SARS-CoV-2 ORF3a dimer with added Emodin in an MSP1E3D1 lipid nanodisc
Sort by: Download
Showing 1 - 10 of 25. Page 1 of 3
Display:
Statistics
×

Download












































Preview first 10
Download

Filter By

Current Database

  • EMDB [18]
  • EMPIAR [7]

Current status

  • REL [25]

Sample type

  • Complex [14]
  • Protein [11]
  • Ligand [9]
  • Tissue [4]
  • Other [1]

Organism

  • Homo sapiens [11]
  • Severe acute respiratory syndrome coronavirus [4]
  • Sus scrofa [4]

EM Method

  • Single-particle [14]
  • Helical reconstruction [4]

Resolution

  • ≥ 2Å and < 3Å [3]
  • ≥ 3Å and < 4Å [10]
  • ≥ 4Å and < 5Å [4]
  • ≥ 6Å and < 8Å [1]

Model molecular weight

  • 50-100 kDa [2]
  • 100-250 kDa [3]
  • 250-500 kDa [1]
  • 500-1000 kDa [2]
  • 5-10 MDa [2]

Release Date

  • 2021 [2]
  • 2020 [12]
  • 2019 [11]

Author by name

  • Toso DB [24]
  • Nogales E [16]
  • Greber BJ [12]
  • Brohawn SG [8]
  • Fang J [8]
  • Hoel CM [8]
  • Kern DM [8]
  • Kotecha A [8]
  • Bautista DM [7]
  • Mali SS [7]
  • Remis JP [7]
  • Sorum B [7]
  • Sridharan S [7]
  • Toso D [7]
  • Bonomi M [4]
  • Eshun-wilson L [4]
  • Fraser JS [4]
  • Iavarone AT [4]
  • Lim K [4]
  • Lohr T [4]
  • Nachury MV [4]
  • Perez-bertoldi JM [4]
  • Portran D [4]
  • Vendruscolo M [4]
  • Zhang R [4]
  • Fromm SA [1]
  • Hurley JH [1]
  • Remis J [1]
  • Su M-Y [1]
  • Su MY [1]

Author by ORCID

  • Nogales E [13]
  • Greber BJ [9]
  • Sorum B [4]
  • Brohawn SG [4]
  • Eshun-wilson L [4]
  • Kern DM [4]
  • Hoel CM [4]
  • Kotecha A [4]
  • Bonomi M [4]
  • Lohr T [4]
  • Nachury MV [4]
  • Perez-bertoldi JM [2]
  • Hurley JH [1]
  • Fromm SA [1]
  • Su MY [1]

Journal

  • BIORXIV [8]
  • ELIFE [8]
  • PNAS [8]
  • NAT STRUCT MOL BIOL [4]
  • NAT COMMUN [1]

Software

  • RELION [9]
  • GCTF [6]
  • EMAN [4]
  • FREALIGN [4]
  • APPION [3]
  • CRYOSPARC [3]
  • CTFFIND [2]

Microscope

  • FEI TITAN KRIOS [13]
  • FEI TALOS ARCTICA [5]

Electron Source

  • FIELD EMISSION GUN [18]

Film or detector model

  • GATAN K2 SUMMIT 4K X 4K [11]
  • GATAN K3 6K X 4K [6]
  • FEI FALCON IV 4K X 4K [1]

EMPIAR Experiment type

  • EMDB [7]

EMPIAR Image category

  • MICROGRAPHS - MULTIFRAME [7]

External links

  • Gene Ontology [10]
  • InterPro [10]
  • PDB [10]
  • PDBe-Kb [10]
  • Pfam [10]
  • UniProt [10]
  • AlphaFold DB [9]
  • ChEMBL [9]
  • ChEBI [8]
  • DrugBank [8]
  • EMDB [7]
  • EMPIAR [7]
  • Complex Portal [5]
  • CATH [3]
  • SCOP2 [1]