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author:"Stokes DL"

Filter By

Current Database

  • EMDB [58]
  • EMPIAR [2]

Current status

  • REL [60]

Sample type

  • Protein [53]
  • Complex [47]
  • Ligand [33]
  • Sample [10]
  • Cellular component [4]
  • Cell [1]

Organism

  • Escherichia coli [17]
  • Arabidopsis thaliana [12]
  • Shewanella oneidensis [8]
  • Homo sapiens [8]
  • Saccharomyces cerevisiae [7]
  • Mus musculus [4]
  • Shewanella oneidensis [4]
  • Escherichia coli [4]
  • Saccharomyces mikatae [1]
  • Archaeoglobus fulgidus [1]

EM Method

  • Single-particle [47]
  • Helical reconstruction [6]
  • Tomography [4]
  • Subtomogram averaging [1]

Resolution

  • ≥ 2Å and < 3Å [10]
  • ≥ 3Å and < 4Å [32]
  • ≥ 4Å and < 5Å [3]
  • ≥ 5Å and < 6Å [1]
  • ≥ 8Å and < 12Å [1]
  • ≥ 12Å and < 16Å [1]
  • ≥ 16Å and < 20Å [2]
  • ≥ 20Å and < 30Å [5]
  • ≥ 30Å [2]

Model molecular weight

  • 0-50 kDa [4]
  • 50-100 kDa [10]
  • 100-250 kDa [25]
  • 250-500 kDa [1]
  • 500-1000 kDa [1]
  • 1-2 MDa [1]

Release Date

  • 2026 [5]
  • 2025 [9]
  • 2023 [10]
  • 2022 [4]
  • 2021 [16]
  • 2019 [1]
  • 2018 [3]
  • 2017 [1]
  • 2016 [1]
  • 2013 [1]
  • 2012 [2]
  • 2011 [2]
  • 2009 [2]
  • 2003 [3]

Author by name

  • Stokes DL [59]
  • Pedersen BP [36]
  • Zhang X [26]
  • Larsen C [14]
  • Schlame M [14]
  • Sweet ME [14]
  • Hammes UZ [12]
  • Hussein AK [12]
  • Schulz L [12]
  • Ung KL [12]
  • Beckstein O [9]
  • Lopez-redondo ML [9]
  • Dedic E [8]
  • Fan S [8]
  • Koutnik-abele S [8]
  • Lopez-redondo M [8]
  • Nel L [8]
  • Hussein A [7]
  • Kenney I [6]
  • Fernandez-martinez J [5]
  • Rice WJ [5]
  • Rout MP [5]
  • Amsinck BL [4]
  • Andersen CG [4]
  • Benhammouche I [4]
  • Bohush A [4]
  • Frain KM [4]
  • Janacek DP [4]
  • Kim SJ [4]
  • Kolb M [4]
  • Olesen E [4]
  • Panyella Pedersen B [4]
  • Sali A [4]
  • Schiott B [4]
  • Stokes D [4]
  • Thaysen K [4]
  • Upla P [4]
  • Winkler M [4]
  • Winkler MBL [4]
  • Wustner D [4]
  • Zuzic L [4]
  • Akey CW [3]
  • Chemmama IE [3]
  • Coudray N [3]
  • Cowin P [3]
  • He W [3]
  • Ludtke SJ [3]
  • Nudelman I [3]
  • Williams R [3]
  • Wu C [3]
  • Wu CC [3]
  • Aitchison JD [2]
  • Almo SC [2]
  • Bonanno JB [2]
  • Chait BT [2]
  • Chaudhury AS [2]
  • Echeverria I [2]
  • Gerton JL [2]
  • Greenberg CH [2]
  • Herricks T [2]
  • Hogan JA [2]
  • Jacobs EY [2]
  • Jarrold MF [2]
  • Koide A [2]
  • Koide S [2]
  • Lasala R [2]
  • Mironska R [2]
  • Pellarin R [2]
  • Raveh B [2]
  • Sampathkumar P [2]
  • Shi Y [2]
  • Shivaraju M [2]
  • Slaughter BD [2]
  • Unruh JR [2]
  • Wang J [2]
  • Yu Z [2]
  • Zhang W [2]
  • Zhang Z [2]
  • De La Cruz Mj [2]
  • Alexopoulos J [1]
  • Allen GS [1]
  • Burley SK [1]
  • Cahill SM [1]
  • Cardozo T [1]
  • Choi WS [1]
  • Clark KM [1]
  • Coller BS [1]
  • Cowburn D [1]
  • Dumont ME [1]
  • Dutta K [1]
  • Fang J [1]
  • Filizola M [1]
  • Hakhverdyan Z [1]
  • Hu M [1]
  • Ketaren NE [1]
  • Kim C [1]
  • L Seyler S [1]
  • Matsui T [1]
  • Mohandas N [1]
  • Nans A [1]

Author by ORCID

  • Stokes DL [41]
  • Pedersen BP [33]
  • Hammes UZ [12]
  • Ung KL [12]
  • Nel L [8]
  • Beckstein O [8]
  • Dedic E [8]
  • Schulz L [8]
  • Koutnik-abele S [8]
  • Hussein A [6]
  • Zhang X [5]
  • Hussein AK [5]
  • Rice WJ [5]
  • Kolb M [4]
  • Schiott B [4]
  • Thaysen K [4]
  • Bohush A [4]
  • Zuzic L [4]
  • Frain KM [4]
  • Wustner D [4]
  • Amsinck BL [4]
  • Cowin P [3]
  • Coudray N [3]
  • Koide S [2]
  • Fan S [2]
  • Chemmama IE [2]
  • Fernandez-martinez J [2]
  • Koide A [2]
  • Shivaraju M [1]
  • Cowburn D [1]
  • Jarrold MF [1]
  • Weiss TM [1]
  • Phillips J [1]
  • Herricks T [1]
  • Ludtke SJ [1]
  • Chaudhury AS [1]
  • Raveh B [1]
  • Sali A [1]
  • Shi Y [1]
  • Akey CW [1]
  • Bonanno JB [1]
  • Vink M [1]
  • Filizola M [1]
  • De La Cruz Mj [1]
  • Hakhverdyan Z [1]
  • Almo SC [1]
  • Rout MP [1]
  • Cahill SM [1]
  • Unruh JR [1]
  • Echeverria I [1]

Journal

  • PNAS [20]
  • NAT PLANTS [8]
  • NATURE [7]
  • ELIFE [6]
  • BIORXIV [5]
  • STRUCTURE [5]
  • TO BE PUBLISHED [5]
  • SCIENCE [3]
  • J GEN PHYSIOL [2]
  • BIOPHYS J [1]
  • BLOOD [1]
  • PROTEIN SCI [1]

Software

  • CRYOSPARC [41]
  • RELION [6]
  • AMIRAMOL 3.0 [3]
  • IMOD [3]
  • CHIMERA [2]
  • COOT [2]
  • EMAN2 [2]
  • SPARX/EMAN2 [2]
  • EMIP [1]
  • FREALIX [1]
  • PROTOMO [1]
  • SPARX [1]
  • SPARX, EMIP [1]
  • SPIDER [1]
  • SPIDER, SPARX, EMAN2, EMAN [1]

Microscope

  • FEI TITAN KRIOS [36]
  • TFS KRIOS [10]
  • FEI/PHILIPS CM200FEG [4]
  • FEI TECNAI F20 [3]
  • FEI/PHILIPS CM200FEG/UT [2]
  • JEOL 2100F [2]
  • JEOL 3200FSC [1]

Electron Source

  • FIELD EMISSION GUN [57]
  • LAB6 [1]

Film or detector model

  • GATAN K3 BIOQUANTUM 6K X 4K [21]
  • GATAN K3 6K X 4K [12]
  • FEI FALCON IV 4K X 4K [6]
  • GATAN K2 QUANTUM 4K X 4K [5]
  • KODAK SO-163 FILM [4]
  • GATAN K2 SUMMIT 4K X 4K [3]
  • GATAN MULTISCAN [3]
  • TVIPS TEMCAM-F224 2K X 2K [2]
  • GENERIC GATAN 4K X 4K [1]
  • GENERIC TVIPS 4K X 4K [1]

EMPIAR Experiment type

  • EMDB [2]

EMPIAR Image category

  • MICROGRAPHS - SINGLE FRAME [2]
  • CLASS AVERAGES [1]

External links

  • PDB [56]
  • AlphaFold DB [48]
  • PDBe-Kb [48]
  • UniProt [48]
  • Gene Ontology [34]
  • InterPro [34]
  • Pfam [33]
  • ChEBI [31]
  • ChEMBL [31]
  • DrugBank [31]
  • Complex Portal [20]
  • EMDB [2]
  • EMPIAR [1]
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Showing 1 - 10 of 60. Page 1 of 6
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EMD-74910
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3D View
High-resolution cryo-EM structure of KdpFABC in the E1 state in lipid nanodisc
CryoEM
Release date: April 1, 2026
Resolution: 2.34 Å
EM Method: Single-particle
Fitted PDBs: 9zwk
Q-score: 0.514
Similar entry percentile: 21%

Hussein AK, Zhang X, Pedersen BP, Stokes DL

To Be Published

EMD-74911
Download Map
3D View
High-resolution cryo-EM structure of KdpFABC in the E1-ATP state in lipid nanodisc
CryoEM
Release date: April 1, 2026
Resolution: 2.28 Å
EM Method: Single-particle
Fitted PDBs: 9zwl
Q-score: 0.573
Similar entry percentile: 43%

Hussein AK, Zhang X, Pedersen BP, Stokes DL

To Be Published

EMD-74912
Download Map
3D View
High-resolution cryo-EM structure of KdpFABC in the E1P state in lipid nanodisc
CryoEM
Release date: April 1, 2026
Resolution: 2.25 Å
EM Method: Single-particle
Fitted PDBs: 9zwm
Q-score: 0.576
Similar entry percentile: 43%

Hussein AK, Zhang X, Pedersen BP, Stokes DL

To Be Published

EMD-74913
Download Map
3D View
High-resolution cryo-EM structure of KdpFABC in the E2P state in lipid nanodisc
CryoEM
Release date: April 1, 2026
Resolution: 2.58 Å
EM Method: Single-particle
Fitted PDBs: 9zwn
Q-score: 0.493
Similar entry percentile: 26%

Hussein AK, Zhang X, Pedersen BP, Stokes DL

To Be Published

EMD-74914
Download Map
3D View
High-resolution cryo-EM structure of KdpFABC in the E2 state in lipid nanodisc
CryoEM
Release date: April 1, 2026
Resolution: 2.72 Å
EM Method: Single-particle
Fitted PDBs: 9zwo
Q-score: 0.498
Similar entry percentile: 37%

Hussein AK, Zhang X, Pedersen BP, Stokes DL

To Be Published

EMD-51894
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3D View
Auxin transporter-like protein 3 LAX3 in the inward occluded state in complex with auxin Indole-3-acetic acid, IAA
CryoEM
Release date: Aug. 13, 2025
Resolution: 3.21 Å
EM Method: Single-particle
Fitted PDBs: 9h61
Q-score: 0.505
Similar entry percentile: 67%

Ung KL, Schulz L, Zuzic L, Amsinck BL, Koutnik-Abele S, Benhammouche I, Andersen CG, Nel L, Schiott B, Stokes DL, Hammes UZ, Pedersen BP

Nat Plants (2025) 11 pp. 1670-1680 [ Pubmed: 40759769 DOI: doi:10.1038/s41477-025-02056-z ]

EMD-51895
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Auxin transporter-like protein 3 LAX3 in the inward occluded state in complex with 2,4-Dichlorophenoxyacetic acid 2,4-D
CryoEM
Release date: Aug. 13, 2025
Resolution: 3.43 Å
EM Method: Single-particle
Fitted PDBs: 9h62
Q-score: 0.479
Similar entry percentile: 67%

Ung KL, Schulz L, Zuzic L, Amsinck BL, Koutnik-Abele S, Benhammouche I, Andersen CG, Nel L, Schiott B, Stokes DL, Hammes UZ, Pedersen BP

Nat Plants (2025) 11 pp. 1670-1680 [ Pubmed: 40759769 DOI: doi:10.1038/s41477-025-02056-z ]

EMD-51896
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3D View
Auxin transporter-like protein 3 LAX3 in the fully occluded state in complex with 2-naphthoxyacetic acid 2-NOA
CryoEM
Release date: Aug. 13, 2025
Resolution: 2.88 Å
EM Method: Single-particle
Fitted PDBs: 9h63
Q-score: 0.542
Similar entry percentile: 69%

Ung KL, Schulz L, Zuzic L, Amsinck BL, Koutnik-Abele S, Benhammouche I, Andersen CG, Nel L, Schiott B, Stokes DL, Hammes UZ, Pedersen BP

Nat Plants (2025) 11 pp. 1670-1680 [ Pubmed: 40759769 DOI: doi:10.1038/s41477-025-02056-z ]

EMD-53308
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3D View
Auxin transporter-like protein 3 LAX3 in the inward open state, apo
CryoEM
Release date: Aug. 13, 2025
Resolution: 3.16 Å
EM Method: Single-particle
Fitted PDBs: 9qqm
Q-score: 0.517
Similar entry percentile: 70%

Ung KL, Schulz L, Zuzic L, Amsinck BL, Koutnik-Abele S, Benhammouche I, Andersen CG, Nel L, Schiott B, Stokes DL, Hammes UZ, Pedersen BP

Nat Plants (2025) 11 pp. 1670-1680 [ Pubmed: 40759769 DOI: doi:10.1038/s41477-025-02056-z ]

EMD-70308
Download Map
3D View
High-resolution cryo-EM structure of KdpFABC in the E1P-ADP state in lipid nanodisc
CryoEM
Release date: May 21, 2025
Resolution: 2.1 Å
EM Method: Single-particle
Fitted PDBs: 9oc4
Q-score: 0.665
Similar entry percentile: 76%

Hussein A, Zhang X, Pedersen BP, Stokes DL

bioRxiv (2025) [ Pubmed: 40654642 DOI: doi:10.1101/2025.05.05.652293 ]

Sort by: Download
Showing 1 - 10 of 60. Page 1 of 6
Display:
Statistics
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Preview 10 entries View All Download file

Filter By

Current Database

  • EMDB [58]
  • EMPIAR [2]

Current status

  • REL [60]

Sample type

  • Protein [53]
  • Complex [47]
  • Ligand [33]
  • Sample [10]
  • Cellular component [4]
  • Cell [1]

Organism

  • Escherichia coli [17]
  • Arabidopsis thaliana [12]
  • Shewanella oneidensis [8]
  • Homo sapiens [8]
  • Saccharomyces cerevisiae [7]
  • Mus musculus [4]
  • Shewanella oneidensis [4]
  • Escherichia coli [4]
  • Saccharomyces mikatae [1]
  • Archaeoglobus fulgidus [1]

EM Method

  • Single-particle [47]
  • Helical reconstruction [6]
  • Tomography [4]
  • Subtomogram averaging [1]

Resolution

  • ≥ 2Å and < 3Å [10]
  • ≥ 3Å and < 4Å [32]
  • ≥ 4Å and < 5Å [3]
  • ≥ 5Å and < 6Å [1]
  • ≥ 8Å and < 12Å [1]
  • ≥ 12Å and < 16Å [1]
  • ≥ 16Å and < 20Å [2]
  • ≥ 20Å and < 30Å [5]
  • ≥ 30Å [2]

Model molecular weight

  • 0-50 kDa [4]
  • 50-100 kDa [10]
  • 100-250 kDa [25]
  • 250-500 kDa [1]
  • 500-1000 kDa [1]
  • 1-2 MDa [1]

Release Date

  • 2026 [5]
  • 2025 [9]
  • 2023 [10]
  • 2022 [4]
  • 2021 [16]
  • 2019 [1]
  • 2018 [3]
  • 2017 [1]
  • 2016 [1]
  • 2013 [1]
  • 2012 [2]
  • 2011 [2]
  • 2009 [2]
  • 2003 [3]

Author by name

  • Stokes DL [59]
  • Pedersen BP [36]
  • Zhang X [26]
  • Larsen C [14]
  • Schlame M [14]
  • Sweet ME [14]
  • Hammes UZ [12]
  • Hussein AK [12]
  • Schulz L [12]
  • Ung KL [12]
  • Beckstein O [9]
  • Lopez-redondo ML [9]
  • Dedic E [8]
  • Fan S [8]
  • Koutnik-abele S [8]
  • Lopez-redondo M [8]
  • Nel L [8]
  • Hussein A [7]
  • Kenney I [6]
  • Fernandez-martinez J [5]
  • Rice WJ [5]
  • Rout MP [5]
  • Amsinck BL [4]
  • Andersen CG [4]
  • Benhammouche I [4]
  • Bohush A [4]
  • Frain KM [4]
  • Janacek DP [4]
  • Kim SJ [4]
  • Kolb M [4]
  • Olesen E [4]
  • Panyella Pedersen B [4]
  • Sali A [4]
  • Schiott B [4]
  • Stokes D [4]
  • Thaysen K [4]
  • Upla P [4]
  • Winkler M [4]
  • Winkler MBL [4]
  • Wustner D [4]
  • Zuzic L [4]
  • Akey CW [3]
  • Chemmama IE [3]
  • Coudray N [3]
  • Cowin P [3]
  • He W [3]
  • Ludtke SJ [3]
  • Nudelman I [3]
  • Williams R [3]
  • Wu C [3]
  • Wu CC [3]
  • Aitchison JD [2]
  • Almo SC [2]
  • Bonanno JB [2]
  • Chait BT [2]
  • Chaudhury AS [2]
  • Echeverria I [2]
  • Gerton JL [2]
  • Greenberg CH [2]
  • Herricks T [2]
  • Hogan JA [2]
  • Jacobs EY [2]
  • Jarrold MF [2]
  • Koide A [2]
  • Koide S [2]
  • Lasala R [2]
  • Mironska R [2]
  • Pellarin R [2]
  • Raveh B [2]
  • Sampathkumar P [2]
  • Shi Y [2]
  • Shivaraju M [2]
  • Slaughter BD [2]
  • Unruh JR [2]
  • Wang J [2]
  • Yu Z [2]
  • Zhang W [2]
  • Zhang Z [2]
  • De La Cruz Mj [2]
  • Alexopoulos J [1]
  • Allen GS [1]
  • Burley SK [1]
  • Cahill SM [1]
  • Cardozo T [1]
  • Choi WS [1]
  • Clark KM [1]
  • Coller BS [1]
  • Cowburn D [1]
  • Dumont ME [1]
  • Dutta K [1]
  • Fang J [1]
  • Filizola M [1]
  • Hakhverdyan Z [1]
  • Hu M [1]
  • Ketaren NE [1]
  • Kim C [1]
  • L Seyler S [1]
  • Matsui T [1]
  • Mohandas N [1]
  • Nans A [1]

Author by ORCID

  • Stokes DL [41]
  • Pedersen BP [33]
  • Hammes UZ [12]
  • Ung KL [12]
  • Nel L [8]
  • Beckstein O [8]
  • Dedic E [8]
  • Schulz L [8]
  • Koutnik-abele S [8]
  • Hussein A [6]
  • Zhang X [5]
  • Hussein AK [5]
  • Rice WJ [5]
  • Kolb M [4]
  • Schiott B [4]
  • Thaysen K [4]
  • Bohush A [4]
  • Zuzic L [4]
  • Frain KM [4]
  • Wustner D [4]
  • Amsinck BL [4]
  • Cowin P [3]
  • Coudray N [3]
  • Koide S [2]
  • Fan S [2]
  • Chemmama IE [2]
  • Fernandez-martinez J [2]
  • Koide A [2]
  • Shivaraju M [1]
  • Cowburn D [1]
  • Jarrold MF [1]
  • Weiss TM [1]
  • Phillips J [1]
  • Herricks T [1]
  • Ludtke SJ [1]
  • Chaudhury AS [1]
  • Raveh B [1]
  • Sali A [1]
  • Shi Y [1]
  • Akey CW [1]
  • Bonanno JB [1]
  • Vink M [1]
  • Filizola M [1]
  • De La Cruz Mj [1]
  • Hakhverdyan Z [1]
  • Almo SC [1]
  • Rout MP [1]
  • Cahill SM [1]
  • Unruh JR [1]
  • Echeverria I [1]

Journal

  • PNAS [20]
  • NAT PLANTS [8]
  • NATURE [7]
  • ELIFE [6]
  • BIORXIV [5]
  • STRUCTURE [5]
  • TO BE PUBLISHED [5]
  • SCIENCE [3]
  • J GEN PHYSIOL [2]
  • BIOPHYS J [1]
  • BLOOD [1]
  • PROTEIN SCI [1]

Software

  • CRYOSPARC [41]
  • RELION [6]
  • AMIRAMOL 3.0 [3]
  • IMOD [3]
  • CHIMERA [2]
  • COOT [2]
  • EMAN2 [2]
  • SPARX/EMAN2 [2]
  • EMIP [1]
  • FREALIX [1]
  • PROTOMO [1]
  • SPARX [1]
  • SPARX, EMIP [1]
  • SPIDER [1]
  • SPIDER, SPARX, EMAN2, EMAN [1]

Microscope

  • FEI TITAN KRIOS [36]
  • TFS KRIOS [10]
  • FEI/PHILIPS CM200FEG [4]
  • FEI TECNAI F20 [3]
  • FEI/PHILIPS CM200FEG/UT [2]
  • JEOL 2100F [2]
  • JEOL 3200FSC [1]

Electron Source

  • FIELD EMISSION GUN [57]
  • LAB6 [1]

Film or detector model

  • GATAN K3 BIOQUANTUM 6K X 4K [21]
  • GATAN K3 6K X 4K [12]
  • FEI FALCON IV 4K X 4K [6]
  • GATAN K2 QUANTUM 4K X 4K [5]
  • KODAK SO-163 FILM [4]
  • GATAN K2 SUMMIT 4K X 4K [3]
  • GATAN MULTISCAN [3]
  • TVIPS TEMCAM-F224 2K X 2K [2]
  • GENERIC GATAN 4K X 4K [1]
  • GENERIC TVIPS 4K X 4K [1]

EMPIAR Experiment type

  • EMDB [2]

EMPIAR Image category

  • MICROGRAPHS - SINGLE FRAME [2]
  • CLASS AVERAGES [1]

External links

  • PDB [56]
  • AlphaFold DB [48]
  • PDBe-Kb [48]
  • UniProt [48]
  • Gene Ontology [34]
  • InterPro [34]
  • Pfam [33]
  • ChEBI [31]
  • ChEMBL [31]
  • DrugBank [31]
  • Complex Portal [20]
  • EMDB [2]
  • EMPIAR [1]