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author:"Song D"

Filter By

Current Database

  • EMDB [38]

Current status

  • REL [38]

Sample type

  • Protein [30]
  • Complex [28]
  • Ligand [23]
  • Virus [6]
  • Cell [4]

Organism

  • Severe acute respiratory syndrome coronavirus [13]
  • Homo sapiens [11]
  • Arabidopsis thaliana [6]
  • Getah virus [6]
  • Bos taurus [6]
  • Vicugna pacos [2]
  • Chlamydomonas reinhardtii [2]
  • Rhizobium tropici [2]
  • Rhizobium tropici [1]

EM Method

  • Single-particle [38]

Resolution

  • ≥ 2Å and < 3Å [6]
  • ≥ 3Å and < 4Å [17]
  • ≥ 4Å and < 5Å [5]
  • ≥ 5Å and < 6Å [2]
  • ≥ 6Å and < 8Å [3]
  • ≥ 8Å and < 12Å [4]
  • ≥ 12Å and < 16Å [1]

Model molecular weight

  • 50-100 kDa [5]
  • 100-250 kDa [8]
  • 250-500 kDa [3]
  • 500-1000 kDa [5]
  • 1-2 MDa [6]
  • > 10 MDa [1]

Release Date

  • 2026 [2]
  • 2025 [4]
  • 2023 [9]
  • 2022 [11]
  • 2021 [10]
  • 2019 [2]

Author by name

  • Song D [38]
  • Liu Z [19]
  • Zhao Y [14]
  • Dong C [12]
  • Dou C [12]
  • Li Y [12]
  • Wang Q [12]
  • Gao Y [11]
  • Jiao J [11]
  • Liu X [11]
  • Shen Z [11]
  • Sun B [11]
  • Wang L [11]
  • Du G [9]
  • Lu J [9]
  • Song DF [9]
  • Xu H [9]
  • Liu H [8]
  • Zong M [8]
  • Duan M [7]
  • Feng J [7]
  • Ma X [7]
  • Qi R [7]
  • Rao M [7]
  • Wang Y [7]
  • Yan A [7]
  • Yu B [7]
  • Zhang L [7]
  • Zhao J [7]
  • Han J [6]
  • Hyun J [6]
  • Jeon TJ [6]
  • Jia X [6]
  • Kim DS [6]
  • Kim HM [6]
  • Kim M [6]
  • Lee SG [6]
  • Li J [6]
  • Li JJ [6]
  • Liu W [6]
  • Liu XY [6]
  • Liu ZF [6]
  • Park H [6]
  • Ryu J [6]
  • Ryu SE [6]
  • Shao X [6]
  • Yoo SH [6]
  • Jiang H [5]
  • Li M [5]
  • Li R [5]
  • Liu C [5]
  • Liu S [5]
  • Meng F [5]
  • Ni X [5]
  • Ning Z [5]
  • Sha C [5]
  • You C [5]
  • Yu X [5]
  • Zhang H [5]
  • Zhang Q [5]
  • Zhang Y [5]
  • Zhao H [5]
  • Deng YQ [4]
  • Tian J [4]
  • Wang K [4]
  • Wang R [4]
  • Wang W [4]
  • Amarilla AA [2]
  • Andersen IV [2]
  • Bailey D [2]
  • Burger J [2]
  • Chana-cuevas P [2]
  • Chappell K [2]
  • Chen J [2]
  • Cheuquemilla Y [2]
  • Dai J [2]
  • Guo J [2]
  • Herth MM [2]
  • Hewins P [2]
  • Himelreichs J [2]
  • Isaacs A [2]
  • Jara R [2]
  • Jiang J [2]
  • Jiang Z [2]
  • Jiao H [2]
  • Jiao HZ [2]
  • Jones ML [2]
  • Jorgensen JT [2]
  • Jung J [2]
  • Jurado KA [2]
  • Khromykh AA [2]
  • Kim E [2]
  • Kjaer A [2]
  • Kramer V [2]
  • Lauer S [2]
  • Lauer SM [2]
  • Li A [2]
  • Li D [2]
  • Liang B [2]
  • Lopes Van Den Broek Si [2]

Author by ORCID

  • Liu Z [10]
  • Song D [8]
  • Liu Z [7]
  • Rao M [7]
  • Zhao J [7]
  • Wang Y [7]
  • Ma X [7]
  • Liu X [6]
  • Song D [6]
  • Wang L [6]
  • Ryu SE [6]
  • Li J [6]
  • Ning Z [5]
  • Dou C [4]
  • Deng YQ [4]
  • Watanabe A [2]
  • Jiang J [2]
  • Gao Y [2]
  • Song C [2]
  • Murata K [2]
  • Li A [2]
  • Zhao J [2]
  • Kjaer A [2]
  • Schwefel D [2]
  • Minagawa J [2]
  • Lopes Van Den Broek Si [2]
  • Zhao Y [2]
  • Miranda-chacon Z [2]
  • Jones ML [2]
  • Rong Y [2]
  • Rojas-fernandez A [2]
  • Liang B [2]
  • Kim E [2]
  • Lauer SM [2]
  • Andersen IV [2]
  • Jara R [2]

Journal

  • ANTIOXID REDOX SIGNAL [6]
  • PLANT CELL [6]
  • TO BE PUBLISHED [6]
  • CELL DISCOV [5]
  • COMMUN BIOL [4]
  • NAT COMMUN [4]
  • ELIFE [2]
  • ISCIENCE [2]
  • NAT PLANTS [2]
  • SCI REP [1]

Software

  • RELION [16]
  • CRYOSPARC [11]
  • CTFFIND [8]
  • JSPR [5]
  • CISTEM [1]
  • GCTF [1]

Microscope

  • FEI TITAN KRIOS [22]
  • TFS KRIOS [5]
  • FEI TALOS ARCTICA [4]
  • TFS TALOS F200C [3]
  • FEI TECNAI F20 [2]
  • FEI POLARA 300 [1]
  • JEOL CRYO ARM 300 [1]

Electron Source

  • FIELD EMISSION GUN [38]

Film or detector model

  • GATAN K3 BIOQUANTUM 6K X 4K [12]
  • GATAN K2 SUMMIT 4K X 4K [11]
  • FEI FALCON II 4K X 4K [6]
  • FEI FALCON IV 4K X 4K [4]
  • GATAN K3 6K X 4K [3]
  • FEI EAGLE 4K X 4K [2]

External links

  • PDB [38]
  • UniProt [28]
  • AlphaFold DB [27]
  • InterPro [26]
  • Pfam [25]
  • ChEBI [23]
  • Gene Ontology [22]
  • PDBe-Kb [22]
  • ChEMBL [21]
  • Complex Portal [11]
  • DrugBank [11]
  • SCOP2 [2]
Sort by: Download
Showing 1 - 10 of 38. Page 1 of 4
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EMD-65252
Download Map
3D View
Structure of plant diacylglycerol O-acyltransferase 1
CryoEM
Focused map
Release date: May 13, 2026
Resolution: 3.01 Å
EM Method: Single-particle

Liu X, Li J, Song D, Liu Z

Plant Cell (2025) 37 [ DOI: doi:10.1093/plcell/koaf239 Pubmed: 41081525 ]

EMD-65167
Download Map
3D View
Structure of plant diacylglycerol O-acyltransferase 1
Consensus map
CryoEM
Release date: May 6, 2026
Resolution: 3.09 Å
EM Method: Single-particle

Liu X, Li J, Song D, Liu Z

Plant Cell (2025) 37 [ DOI: doi:10.1093/plcell/koaf239 Pubmed: 41081525 ]

EMD-65115
Download Map
3D View
Structure of the plant diacylglycerol O-acyltransferase 1 C246A mutant
CryoEM
Release date: Nov. 5, 2025
Resolution: 3.28 Å
EM Method: Single-particle
Fitted PDBs: 9vjm
Q-score: 0.382

Liu X, Li J, Song D, Liu Z

Plant Cell (2025) 37 [ DOI: doi:10.1093/plcell/koaf239 Pubmed: 41081525 ]

EMD-65126
Download Map
3D View
Structure of the plant diacylglycerol O-acyltransferase 1 H447A mutant
CryoEM
Release date: Nov. 5, 2025
Resolution: 2.6 Å
EM Method: Single-particle
Fitted PDBs: 9vjx
Q-score: 0.591

Liu X, Li J, Song D, Liu Z

Plant Cell (2025) 37 [ DOI: doi:10.1093/plcell/koaf239 Pubmed: 41081525 ]

EMD-65127
Download Map
3D View
Structure of the plant diacylglycerol O-acyltransferase 1 in complex with triacylglycerol and free fatty acid
Composite map
CryoEM
Release date: Nov. 5, 2025
Resolution: 3.01 Å
EM Method: Single-particle
Fitted PDBs: 9vk0
Q-score: 0.459

Liu X, Li J, Song D, Liu Z

Plant Cell (2025) 37 [ DOI: doi:10.1093/plcell/koaf239 Pubmed: 41081525 ]

EMD-65128
Download Map
3D View
Structure of the plant diacylglycerol O-acyltransferase 1 in complex with oleoyl-CoA
CryoEM
Release date: Nov. 5, 2025
Resolution: 3.54 Å
EM Method: Single-particle
Fitted PDBs: 9vk1
Q-score: 0.399

Liu X, Li J, Song D, Liu Z

Plant Cell (2025) 37 [ DOI: doi:10.1093/plcell/koaf239 Pubmed: 41081525 ]

EMD-34522
Download Map
3D View
Cryo-EM Structure of SARS-CoV-2 BA.2 Spike protein in complex with BA7535
CryoEM
Release date: Aug. 30, 2023
Resolution: 2.44 Å
EM Method: Single-particle
Fitted PDBs: 8h7l
Q-score: 0.377

Wang Y, Yan A, Song D, Duan M, Dong C, Chen J, Jiang Z, Gao Y, Rao M, Feng J, Zhang Z, Qi R, Ma X, Liu H, Yu B, Wang Q, Zong M, Jiao J, Xing P, Pan R, Li D, Xiao J, Sun J, Li Y, Zhang L, Shen Z, Sun B, Zhao Y, Zhang L, Dai J, Zhao J, Wang L, Dou C, Liu Z, Zhao J

Nat Commun (2024) 15 pp. 842-842 [ Pubmed: 38287016 DOI: doi:10.1038/s41467-024-45050-3 ]

EMD-34526
Download Map
3D View
Cryo-EM structure of SARS-CoV-2 BA.2 RBD in complex with BA7535 fab local refinement
CryoEM
Release date: Aug. 30, 2023
Resolution: 3.07 Å
EM Method: Single-particle
Fitted PDBs: 8h7z
Q-score: 0.461

Wang Y, Yan A, Song D, Duan M, Dong C, Chen J, Jiang Z, Gao Y, Rao M, Feng J, Zhang Z, Qi R, Ma X, Liu H, Yu B, Wang Q, Zong M, Jiao J, Xing P, Pan R, Li D, Xiao J, Sun J, Li Y, Zhang L, Shen Z, Sun B, Zhao Y, Zhang L, Dai J, Zhao J, Wang L, Dou C, Liu Z, Zhao J

Nat Commun (2024) 15 pp. 842-842 [ Pubmed: 38287016 DOI: doi:10.1038/s41467-024-45050-3 ]

EMD-33151
Download Map
3D View
Cryo-EM structure of SARS-CoV-2 Delta Spike protein in complex with BA7208 and BA7125 fab
CryoEM
Release date: March 15, 2023
Resolution: 3.08 Å
EM Method: Single-particle
Fitted PDBs: 7xdl
Q-score: 0.5

Wang Y, Yan A, Song D, Dong C, Rao M, Gao Y, Qi R, Ma X, Wang Q, Xu H, Liu H, Han J, Duan M, Liu S, Yu X, Zong M, Feng J, Jiao J, Zhang H, Li M, Yu B, Wang Y, Meng F, Ni X, Li Y, Shen Z, Sun B, Shao X, Zhao H, Zhao Y, Li R, Zhang Y, Du G, Lu J, You C, Jiang H, Zhang L, Wang L, Dou C, Liu Z, Zhao J

Cell Discov (2023) 9 pp. 3-3 [ DOI: doi:10.1038/s41421-022-00509-9 Pubmed: 36609558 ]

EMD-16010
Download Map
3D View
Cryo-EM structure of SARS-CoV-2 spike HexaPro variant in complex with nanobody W25 map 3, focus refinement on RBD, W25 and adjacent NTD
CryoEM
Release date: March 8, 2023
Resolution: 5.92 Å
EM Method: Single-particle
Fitted PDBs: 8bev
Q-score: 0.203

Modhiran N, Lauer SM, Amarilla AA, Hewins P, Lopes van den Broek SI, Low YS, Thakur N, Liang B, Nieto GV, Jung J, Paramitha D, Isaacs A, Sng JDJ, Song D, Jorgensen JT, Cheuquemilla Y, Burger J, Andersen IV, Himelreichs J, Jara R, MacLoughlin R, Miranda-Chacon Z, Chana-Cuevas P, Kramer V, Spahn C, Mielke T, Khromykh AA, Munro T, Jones ML, Young PR, Chappell K, Bailey D, Kjaer A, Herth MM, Jurado KA, Schwefel D, Rojas-Fernandez A, Watterson D

iScience (2023) 26 pp. 107085-107085 [ DOI: doi:10.1016/j.isci.2023.107085 Pubmed: 37361875 ]

Sort by: Download
Showing 1 - 10 of 38. Page 1 of 4
Display:
Statistics
×

Download











































Preview first 10
Download

Filter By

Current Database

  • EMDB [38]

Current status

  • REL [38]

Sample type

  • Protein [30]
  • Complex [28]
  • Ligand [23]
  • Virus [6]
  • Cell [4]

Organism

  • Severe acute respiratory syndrome coronavirus [13]
  • Homo sapiens [11]
  • Arabidopsis thaliana [6]
  • Getah virus [6]
  • Bos taurus [6]
  • Vicugna pacos [2]
  • Chlamydomonas reinhardtii [2]
  • Rhizobium tropici [2]
  • Rhizobium tropici [1]

EM Method

  • Single-particle [38]

Resolution

  • ≥ 2Å and < 3Å [6]
  • ≥ 3Å and < 4Å [17]
  • ≥ 4Å and < 5Å [5]
  • ≥ 5Å and < 6Å [2]
  • ≥ 6Å and < 8Å [3]
  • ≥ 8Å and < 12Å [4]
  • ≥ 12Å and < 16Å [1]

Model molecular weight

  • 50-100 kDa [5]
  • 100-250 kDa [8]
  • 250-500 kDa [3]
  • 500-1000 kDa [5]
  • 1-2 MDa [6]
  • > 10 MDa [1]

Release Date

  • 2026 [2]
  • 2025 [4]
  • 2023 [9]
  • 2022 [11]
  • 2021 [10]
  • 2019 [2]

Author by name

  • Song D [38]
  • Liu Z [19]
  • Zhao Y [14]
  • Dong C [12]
  • Dou C [12]
  • Li Y [12]
  • Wang Q [12]
  • Gao Y [11]
  • Jiao J [11]
  • Liu X [11]
  • Shen Z [11]
  • Sun B [11]
  • Wang L [11]
  • Du G [9]
  • Lu J [9]
  • Song DF [9]
  • Xu H [9]
  • Liu H [8]
  • Zong M [8]
  • Duan M [7]
  • Feng J [7]
  • Ma X [7]
  • Qi R [7]
  • Rao M [7]
  • Wang Y [7]
  • Yan A [7]
  • Yu B [7]
  • Zhang L [7]
  • Zhao J [7]
  • Han J [6]
  • Hyun J [6]
  • Jeon TJ [6]
  • Jia X [6]
  • Kim DS [6]
  • Kim HM [6]
  • Kim M [6]
  • Lee SG [6]
  • Li J [6]
  • Li JJ [6]
  • Liu W [6]
  • Liu XY [6]
  • Liu ZF [6]
  • Park H [6]
  • Ryu J [6]
  • Ryu SE [6]
  • Shao X [6]
  • Yoo SH [6]
  • Jiang H [5]
  • Li M [5]
  • Li R [5]
  • Liu C [5]
  • Liu S [5]
  • Meng F [5]
  • Ni X [5]
  • Ning Z [5]
  • Sha C [5]
  • You C [5]
  • Yu X [5]
  • Zhang H [5]
  • Zhang Q [5]
  • Zhang Y [5]
  • Zhao H [5]
  • Deng YQ [4]
  • Tian J [4]
  • Wang K [4]
  • Wang R [4]
  • Wang W [4]
  • Amarilla AA [2]
  • Andersen IV [2]
  • Bailey D [2]
  • Burger J [2]
  • Chana-cuevas P [2]
  • Chappell K [2]
  • Chen J [2]
  • Cheuquemilla Y [2]
  • Dai J [2]
  • Guo J [2]
  • Herth MM [2]
  • Hewins P [2]
  • Himelreichs J [2]
  • Isaacs A [2]
  • Jara R [2]
  • Jiang J [2]
  • Jiang Z [2]
  • Jiao H [2]
  • Jiao HZ [2]
  • Jones ML [2]
  • Jorgensen JT [2]
  • Jung J [2]
  • Jurado KA [2]
  • Khromykh AA [2]
  • Kim E [2]
  • Kjaer A [2]
  • Kramer V [2]
  • Lauer S [2]
  • Lauer SM [2]
  • Li A [2]
  • Li D [2]
  • Liang B [2]
  • Lopes Van Den Broek Si [2]

Author by ORCID

  • Liu Z [10]
  • Song D [8]
  • Liu Z [7]
  • Rao M [7]
  • Zhao J [7]
  • Wang Y [7]
  • Ma X [7]
  • Liu X [6]
  • Song D [6]
  • Wang L [6]
  • Ryu SE [6]
  • Li J [6]
  • Ning Z [5]
  • Dou C [4]
  • Deng YQ [4]
  • Watanabe A [2]
  • Jiang J [2]
  • Gao Y [2]
  • Song C [2]
  • Murata K [2]
  • Li A [2]
  • Zhao J [2]
  • Kjaer A [2]
  • Schwefel D [2]
  • Minagawa J [2]
  • Lopes Van Den Broek Si [2]
  • Zhao Y [2]
  • Miranda-chacon Z [2]
  • Jones ML [2]
  • Rong Y [2]
  • Rojas-fernandez A [2]
  • Liang B [2]
  • Kim E [2]
  • Lauer SM [2]
  • Andersen IV [2]
  • Jara R [2]

Journal

  • ANTIOXID REDOX SIGNAL [6]
  • PLANT CELL [6]
  • TO BE PUBLISHED [6]
  • CELL DISCOV [5]
  • COMMUN BIOL [4]
  • NAT COMMUN [4]
  • ELIFE [2]
  • ISCIENCE [2]
  • NAT PLANTS [2]
  • SCI REP [1]

Software

  • RELION [16]
  • CRYOSPARC [11]
  • CTFFIND [8]
  • JSPR [5]
  • CISTEM [1]
  • GCTF [1]

Microscope

  • FEI TITAN KRIOS [22]
  • TFS KRIOS [5]
  • FEI TALOS ARCTICA [4]
  • TFS TALOS F200C [3]
  • FEI TECNAI F20 [2]
  • FEI POLARA 300 [1]
  • JEOL CRYO ARM 300 [1]

Electron Source

  • FIELD EMISSION GUN [38]

Film or detector model

  • GATAN K3 BIOQUANTUM 6K X 4K [12]
  • GATAN K2 SUMMIT 4K X 4K [11]
  • FEI FALCON II 4K X 4K [6]
  • FEI FALCON IV 4K X 4K [4]
  • GATAN K3 6K X 4K [3]
  • FEI EAGLE 4K X 4K [2]

External links

  • PDB [38]
  • UniProt [28]
  • AlphaFold DB [27]
  • InterPro [26]
  • Pfam [25]
  • ChEBI [23]
  • Gene Ontology [22]
  • PDBe-Kb [22]
  • ChEMBL [21]
  • Complex Portal [11]
  • DrugBank [11]
  • SCOP2 [2]