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author:"Shmakov SA"

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Current Database

  • EMDB [4]
  • EMPIAR [1]

Current status

  • REL [5]

Sample type

  • Complex [4]
  • Protein [4]
  • RNA [4]
  • DNA [3]
  • Ligand [3]

Organism

  • Lachnospiraceae bacterium nd2006 [3]
  • Bacterium [2]
  • Thermanaerosceptrum fracticalcis [1]
  • Dna molecule [1]
  • Uncultured prevotellaceae bacterium [1]

EM Method

  • Single-particle [4]

Resolution

  • ≥ 2Å and < 3Å [3]
  • ≥ 3Å and < 4Å [1]

Release Date

  • 2026 [3]
  • 2025 [2]

Author by name

  • Koonin EV [4]
  • Makarova KS [4]
  • Shmakov SA [4]
  • Alfonse L [3]
  • Ditommaso T [3]
  • Garrity AJ [3]
  • Kobayashi TA [3]
  • Maben Z [3]
  • Morinaga H [3]
  • Munoz G [3]
  • Nureki O [3]
  • Omura SN [3]
  • Onishi K [3]
  • Ornstein A [3]
  • Wilkinson ME [2]
  • Zhang F [2]
  • Altae-tran H [1]
  • Edmonds KK [1]
  • Kannan S [1]
  • Macrae RK [1]
  • Mears KS [1]
  • Strebinger D [1]
  • Vo SC [1]
  • Yao CJ [1]
  • Zilberzwige-tal S [1]

Journal

  • TO BE PUBLISHED [3]
  • CELL [2]

Software

  • CRYOSPARC [3]
  • CTFFIND [1]
  • RELION [1]

Microscope

  • TFS KRIOS [3]
  • FEI TITAN KRIOS [1]

Electron Source

  • FIELD EMISSION GUN [4]

Film or detector model

  • GATAN K3 BIOQUANTUM 6K X 4K [4]

EMPIAR Experiment type

  • EMDB [1]

EMPIAR Image category

  • MICROGRAPHS - MULTIFRAME [1]

External links

  • AlphaFold DB [1]
  • EMDB [1]
  • EMPIAR [1]
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EMD-69297
Download Map
3D View
Cryo-EM structure of the UnCas12m4a-crRNA-tgDNA ternary complex in the TS-cleaving state
CryoEM
Release date: Sept. 2, 2026
Resolution: 2.69 Å
EM Method: Single-particle
Fitted PDBs: 23vu
Q-score: 0.623
Similar entry percentile: 91%

Morinaga H, Omura SN, Alfonse L, Ornstein A, Kobayashi TA, Onishi K, Makarova KS, Shmakov SA, Munoz G, Garrity AJ, DiTommaso T, Koonin EV, Maben Z, Nureki O

To Be Published

EMD-69298
Download Map
3D View
Cryo-EM structure of the UnCas12m4a-crRNA-tgDNA ternary complex in the NTS-cleaving state
CryoEM
Release date: Sept. 2, 2026
Resolution: 2.84 Å
EM Method: Single-particle
Fitted PDBs: 23vv
Q-score: 0.581
Similar entry percentile: 86%

Morinaga H, Omura SN, Alfonse L, Ornstein A, Kobayashi TA, Onishi K, Makarova KS, Shmakov SA, Munoz G, Garrity AJ, DiTommaso T, Koonin EV, Maben Z, Nureki O

To Be Published

EMD-69299
Download Map
3D View
Cryo-EM structure of the TfCas12m3-crRNA-tgDNA ternary complex
CryoEM
Release date: Sept. 2, 2026
Resolution: 2.39 Å
EM Method: Single-particle
Fitted PDBs: 23vw
Q-score: 0.629
Similar entry percentile: 80%

Morinaga H, Omura SN, Alfonse L, Ornstein A, Kobayashi TA, Onishi K, Makarova KS, Shmakov SA, Munoz G, Garrity AJ, DiTommaso T, Koonin EV, Maben Z, Nureki O

To Be Published

EMPIAR-12962
Related EMDB
EMD-43682
Cryo-EM micrographs of PbAbiF dimer bound to ncRNA
Release date: Dec. 7, 2025
Dataset size: 587.8 GB
Experiment type: EMDB

Zilberzwige-Tal S, Altae-Tran H, Kannan S, Wilkinson ME, Vo SC, Strebinger D, Edmonds KK, Yao CJ, Mears KS, Shmakov SA, Makarova KS, Macrae RK, Koonin EV, Zhang F

Cell (2025) 188 pp. 1925-1940.e20 [ Pubmed: 39970912 DOI: 10.1016/j.cell.2025.01.034 ]

Image sets:
  • Unaligned multi-frame movies of PbAbiF RNP
EMD-43682
Download Map
3D View
Raw data
EMPIAR-12962
PbAbiF dimer bound to ncRNA
CryoEM
Release date: Feb. 12, 2025
Resolution: 3.56 Å
EM Method: Single-particle
Fitted PDBs: 8vz6
Q-score: 0.48
Similar entry percentile: 74%

Zilberzwige-Tal S, Altae-Tran H, Kannan S, Wilkinson ME, Vo SC, Strebinger D, Edmonds KK, Yao CJ, Mears KS, Shmakov SA, Makarova KS, Macrae RK, Koonin EV, Zhang F

Cell (2025) 188 pp. 1925-1940.e20 [ DOI: doi:10.1016/j.cell.2025.01.034 Pubmed: 39970912 ]

Sort by: Download
Showing 1 - 5 of 5. Page 1 of 1
Display:
Statistics
×

Download



Preview 10 entries View All Download file

Filter By

Current Database

  • EMDB [4]
  • EMPIAR [1]

Current status

  • REL [5]

Sample type

  • Complex [4]
  • Protein [4]
  • RNA [4]
  • DNA [3]
  • Ligand [3]

Organism

  • Lachnospiraceae bacterium nd2006 [3]
  • Bacterium [2]
  • Thermanaerosceptrum fracticalcis [1]
  • Dna molecule [1]
  • Uncultured prevotellaceae bacterium [1]

EM Method

  • Single-particle [4]

Resolution

  • ≥ 2Å and < 3Å [3]
  • ≥ 3Å and < 4Å [1]

Release Date

  • 2026 [3]
  • 2025 [2]

Author by name

  • Koonin EV [4]
  • Makarova KS [4]
  • Shmakov SA [4]
  • Alfonse L [3]
  • Ditommaso T [3]
  • Garrity AJ [3]
  • Kobayashi TA [3]
  • Maben Z [3]
  • Morinaga H [3]
  • Munoz G [3]
  • Nureki O [3]
  • Omura SN [3]
  • Onishi K [3]
  • Ornstein A [3]
  • Wilkinson ME [2]
  • Zhang F [2]
  • Altae-tran H [1]
  • Edmonds KK [1]
  • Kannan S [1]
  • Macrae RK [1]
  • Mears KS [1]
  • Strebinger D [1]
  • Vo SC [1]
  • Yao CJ [1]
  • Zilberzwige-tal S [1]

Journal

  • TO BE PUBLISHED [3]
  • CELL [2]

Software

  • CRYOSPARC [3]
  • CTFFIND [1]
  • RELION [1]

Microscope

  • TFS KRIOS [3]
  • FEI TITAN KRIOS [1]

Electron Source

  • FIELD EMISSION GUN [4]

Film or detector model

  • GATAN K3 BIOQUANTUM 6K X 4K [4]

EMPIAR Experiment type

  • EMDB [1]

EMPIAR Image category

  • MICROGRAPHS - MULTIFRAME [1]

External links

  • AlphaFold DB [1]
  • EMDB [1]
  • EMPIAR [1]