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author:"Shiriaev D"

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Current Database

  • EMDB [9]

Current status

  • REL [9]

Sample type

  • Complex [9]
  • Ligand [3]
  • Protein [3]
  • RNA [3]

Organism

  • Homo sapiens [9]

EM Method

  • Single-particle [9]

Resolution

  • ≥ 2Å and < 3Å [3]
  • ≥ 3Å and < 4Å [5]
  • ≥ 6Å and < 8Å [1]

Model molecular weight

  • 1-2 MDa [3]

Release Date

  • 2026 [3]
  • 2024 [6]

Author by name

  • Rorbach J [9]
  • Shiriaev D [9]
  • Abdelbagi A [6]
  • Atanassov I [6]
  • Benhalevy D [6]
  • Cai Y [6]
  • Cipullo M [6]
  • Gopalakrishna S [6]
  • Hafner M [6]
  • Hallberg BM [6]
  • Krueger A [6]
  • Li X [6]
  • Liu Y [6]
  • Lobo V [6]
  • Marks J [6]
  • Minczuk M [6]
  • Misic J [6]
  • Nguyen MD [6]
  • Palenikova P [6]
  • Pirozhkova MA [6]
  • Sarshad AA [6]
  • Valentin Gese G [6]
  • Bilalli L [3]
  • Khawaja A [3]
  • Singh V [3]

Author by ORCID

  • Benhalevy D [6]
  • Sarshad AA [6]
  • Minczuk M [6]
  • Atanassov I [6]
  • Liu Y [6]
  • Palenikova P [6]
  • Krueger A [6]
  • Rorbach J [6]
  • Hafner M [6]
  • Hallberg BM [6]
  • Li X [6]
  • Gopalakrishna S [6]
  • Abdelbagi A [6]

Journal

  • NAT COMMUN [6]
  • TO BE PUBLISHED [3]

Software

  • CRYOSPARC [7]

Microscope

  • FEI TITAN KRIOS [8]
  • TFS KRIOS [1]

Electron Source

  • FIELD EMISSION GUN [9]

Film or detector model

  • GATAN K3 BIOQUANTUM 6K X 4K [6]
  • GATAN K3 6K X 4K [3]

External links

  • PDB [9]
  • AlphaFold DB [3]
  • ChEBI [3]
  • ChEMBL [3]
  • Complex Portal [3]
  • DrugBank [3]
  • PDBe-Kb [3]
  • Pfam [3]
  • UniProt [3]
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EMD-51873
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Assembly intermediate of human mitochondrial ribosome small subunit in complex with PUS1, METTL15 and RBFA IN conformation state M1
CryoEM
Release date: May 27, 2026
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 9h51
Q-score: 0.327

Singh V, Shiriaev D, Bilalli L, Khawaja A, Rorbach J

To Be Published

EMD-51877
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Assembly intermediate of human mitochondrial ribosome small subunit in complex with NOA1 and TFB1M state N3
CryoEM
Release date: May 13, 2026
Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 9h55

Singh V, Shiriaev D, Bilalli L, Khawaja A, Rorbach J

To Be Published

EMD-51876
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3D View
Assembly intermediate of human mitochondrial ribosome small subunit in complex with NOA1 and partial RBFA state N2
CryoEM
Release date: May 6, 2026
Resolution: 3.0 Å
EM Method: Single-particle
Fitted PDBs: 9h54
Q-score: 0.257

Singh V, Shiriaev D, Bilalli L, Khawaja A, Rorbach J

To Be Published

EMD-18438
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mt-SSU assembly intermediate in GTPBP8 knock-out cells, state 1
CryoEM
Release date: June 26, 2024
Resolution: 6.75 Å
EM Method: Single-particle

Cipullo M, Valentin Gese G, Gopalakrishna S, Krueger A, Lobo V, Pirozhkova MA, Marks J, Palenikova P, Shiriaev D, Liu Y, Misic J, Cai Y, Nguyen MD, Abdelbagi A, Li X, Minczuk M, Hafner M, Benhalevy D, Sarshad AA, Atanassov I, Hallberg BM, Rorbach J

Nat Commun (2024) 15 pp. 5664-5664 [ Pubmed: 38969660 DOI: doi:10.1038/s41467-024-50011-x ]

EMD-18439
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3D View
mt-SSU assembly intermediate in GTPBP8 knock-out cells, state 2
CryoEM
Release date: June 26, 2024
Resolution: 3.96 Å
EM Method: Single-particle

Cipullo M, Valentin Gese G, Gopalakrishna S, Krueger A, Lobo V, Pirozhkova MA, Marks J, Palenikova P, Shiriaev D, Liu Y, Misic J, Cai Y, Nguyen MD, Abdelbagi A, Li X, Minczuk M, Hafner M, Benhalevy D, Sarshad AA, Atanassov I, Hallberg BM, Rorbach J

Nat Commun (2024) 15 pp. 5664-5664 [ Pubmed: 38969660 DOI: doi:10.1038/s41467-024-50011-x ]

EMD-18440
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mt-SSU assembly intermediate in GTPBP8 knock-out cells, state 3
CryoEM
Release date: June 26, 2024
Resolution: 3.05 Å
EM Method: Single-particle

Cipullo M, Valentin Gese G, Gopalakrishna S, Krueger A, Lobo V, Pirozhkova MA, Marks J, Palenikova P, Shiriaev D, Liu Y, Misic J, Cai Y, Nguyen MD, Abdelbagi A, Li X, Minczuk M, Hafner M, Benhalevy D, Sarshad AA, Atanassov I, Hallberg BM, Rorbach J

Nat Commun (2024) 15 pp. 5664-5664 [ Pubmed: 38969660 DOI: doi:10.1038/s41467-024-50011-x ]

EMD-18443
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3D View
mt-SSU assembly intermediate in GTPBP8 knock-out cells, state 4
CryoEM
Release date: June 26, 2024
Resolution: 2.98 Å
EM Method: Single-particle

Cipullo M, Valentin Gese G, Gopalakrishna S, Krueger A, Lobo V, Pirozhkova MA, Marks J, Palenikova P, Shiriaev D, Liu Y, Misic J, Cai Y, Nguyen MD, Abdelbagi A, Li X, Minczuk M, Hafner M, Benhalevy D, Sarshad AA, Atanassov I, Hallberg BM, Rorbach J

Nat Commun (2024) 15 pp. 5664-5664 [ Pubmed: 38969660 DOI: doi:10.1038/s41467-024-50011-x ]

EMD-18460
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3D View
mt-LSU assembly intermediate in GTPBP8 knock-out cells, state 1
CryoEM
Release date: June 26, 2024
Resolution: 2.74 Å
EM Method: Single-particle

Cipullo M, Valentin Gese G, Gopalakrishna S, Krueger A, Lobo V, Pirozhkova MA, Marks J, Palenikova P, Shiriaev D, Liu Y, Misic J, Cai Y, Nguyen MD, Abdelbagi A, Li X, Minczuk M, Hafner M, Benhalevy D, Sarshad AA, Atanassov I, Hallberg BM, Rorbach J

Nat Commun (2024) 15 pp. 5664-5664 [ Pubmed: 38969660 DOI: doi:10.1038/s41467-024-50011-x ]

EMD-18461
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3D View
mt-LSU assembly intermediate in GTPBP8 knock-out cells, state 2
CryoEM
Release date: June 26, 2024
Resolution: 2.42 Å
EM Method: Single-particle

Cipullo M, Valentin Gese G, Gopalakrishna S, Krueger A, Lobo V, Pirozhkova MA, Marks J, Palenikova P, Shiriaev D, Liu Y, Misic J, Cai Y, Nguyen MD, Abdelbagi A, Li X, Minczuk M, Hafner M, Benhalevy D, Sarshad AA, Atanassov I, Hallberg BM, Rorbach J

Nat Commun (2024) 15 pp. 5664-5664 [ Pubmed: 38969660 DOI: doi:10.1038/s41467-024-50011-x ]

Sort by: Download
Showing 1 - 9 of 9. Page 1 of 1
Display:
Statistics
×

Download











































Preview first 10
Download

Filter By

Current Database

  • EMDB [9]

Current status

  • REL [9]

Sample type

  • Complex [9]
  • Ligand [3]
  • Protein [3]
  • RNA [3]

Organism

  • Homo sapiens [9]

EM Method

  • Single-particle [9]

Resolution

  • ≥ 2Å and < 3Å [3]
  • ≥ 3Å and < 4Å [5]
  • ≥ 6Å and < 8Å [1]

Model molecular weight

  • 1-2 MDa [3]

Release Date

  • 2026 [3]
  • 2024 [6]

Author by name

  • Rorbach J [9]
  • Shiriaev D [9]
  • Abdelbagi A [6]
  • Atanassov I [6]
  • Benhalevy D [6]
  • Cai Y [6]
  • Cipullo M [6]
  • Gopalakrishna S [6]
  • Hafner M [6]
  • Hallberg BM [6]
  • Krueger A [6]
  • Li X [6]
  • Liu Y [6]
  • Lobo V [6]
  • Marks J [6]
  • Minczuk M [6]
  • Misic J [6]
  • Nguyen MD [6]
  • Palenikova P [6]
  • Pirozhkova MA [6]
  • Sarshad AA [6]
  • Valentin Gese G [6]
  • Bilalli L [3]
  • Khawaja A [3]
  • Singh V [3]

Author by ORCID

  • Benhalevy D [6]
  • Sarshad AA [6]
  • Minczuk M [6]
  • Atanassov I [6]
  • Liu Y [6]
  • Palenikova P [6]
  • Krueger A [6]
  • Rorbach J [6]
  • Hafner M [6]
  • Hallberg BM [6]
  • Li X [6]
  • Gopalakrishna S [6]
  • Abdelbagi A [6]

Journal

  • NAT COMMUN [6]
  • TO BE PUBLISHED [3]

Software

  • CRYOSPARC [7]

Microscope

  • FEI TITAN KRIOS [8]
  • TFS KRIOS [1]

Electron Source

  • FIELD EMISSION GUN [9]

Film or detector model

  • GATAN K3 BIOQUANTUM 6K X 4K [6]
  • GATAN K3 6K X 4K [3]

External links

  • PDB [9]
  • AlphaFold DB [3]
  • ChEBI [3]
  • ChEMBL [3]
  • Complex Portal [3]
  • DrugBank [3]
  • PDBe-Kb [3]
  • Pfam [3]
  • UniProt [3]