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author:"Shi Q"

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Current Database

  • EMDB [37]

Current status

  • REL [37]

Sample type

  • Complex [37]
  • Protein [27]
  • Ligand [24]
  • DNA [12]

Organism

  • Homo sapiens [30]
  • Severe acute respiratory syndrome coronavirus [10]
  • Drosophila melanogaster [4]
  • Escherichia coli [2]
  • (no species) [1]
  • Saccharomyces cerevisiae [1]

EM Method

  • Single-particle [37]

Resolution

  • ≥ 2Å and < 3Å [3]
  • ≥ 3Å and < 4Å [22]
  • ≥ 4Å and < 5Å [8]
  • ≥ 6Å and < 8Å [4]

Model molecular weight

  • 50-100 kDa [1]
  • 100-250 kDa [13]
  • 250-500 kDa [4]
  • 500-1000 kDa [9]

Release Date

  • 2026 [5]
  • 2025 [1]
  • 2024 [7]
  • 2023 [24]

Author by name

  • Shi Q [37]
  • Liu L [32]
  • Deng Z [22]
  • Tong Z [22]
  • Li JB [21]
  • Pan M [21]
  • Sun M [20]
  • Ai HS [18]
  • Ai H [17]
  • Liang L [16]
  • Xie C [15]
  • Du Y [14]
  • Xu Z [13]
  • Zheng Q [12]
  • Zhang L [11]
  • Chen L [10]
  • Chen Q [10]
  • Chen X [10]
  • Feng C [10]
  • Gao X [10]
  • Guo L [10]
  • He J [10]
  • Hu F [10]
  • Hu P [10]
  • Huang Y [10]
  • Ke B [10]
  • Ke C [10]
  • Li F [10]
  • Li J [10]
  • Li Z [10]
  • Liang D [10]
  • Lin X [10]
  • Liu B [10]
  • Liu C [10]
  • Liu X [10]
  • Man P [10]
  • Pei R [10]
  • Peng X [10]
  • Shi J [10]
  • Su M [10]
  • Tang G [10]
  • Tang X [10]
  • Tao S [10]
  • Tian C [10]
  • Wang M [10]
  • Wang Q [10]
  • Wang Y [10]
  • Xiang H [10]
  • Xiong X [10]
  • Yan Q [10]
  • Yang N [10]
  • Yu H [10]
  • Zebin T [10]
  • Zhang Y [10]
  • Zheng P [10]
  • Deng ZH [8]
  • Chu GC [6]
  • Gao S [6]
  • Liang J [6]
  • Tian J [6]
  • Wu X [6]
  • Gai H [5]
  • Gao B [5]
  • Jiakun T [5]
  • Li D [5]
  • Liying Z [5]
  • Lu X [5]
  • Mo X [5]
  • Pang P [5]
  • Tong ZB [5]
  • Wang P [5]
  • Xia K [5]
  • Yao J [5]
  • He K [4]
  • Jia-bin L [4]
  • Li X [4]
  • Sun D [4]
  • Xue Q [4]
  • Zhiheng D [4]
  • Ziyu X [4]
  • Qu Q [3]
  • Guochao C [2]
  • Li Y [2]
  • Sun G [2]
  • Tian CL [2]
  • Yin H [2]
  • Chen C [1]
  • Du X [1]
  • He Z [1]
  • He ZZ [1]
  • Huasong A [1]
  • Lei L [1]
  • Liu F [1]
  • Song Y [1]
  • Tao W [1]
  • Wang XD [1]
  • Xiao P [1]
  • Zebing T [1]
  • Zhang Z [1]
  • Zhihend D [1]

Author by ORCID

  • Ai H [12]
  • Shi Q [11]
  • Deng Z [11]
  • Gao X [10]
  • Yu H [10]
  • Chen X [10]
  • Xiong X [10]
  • Tang X [10]
  • Liu L [10]
  • Sun M [10]
  • He J [10]
  • Chen L [10]
  • Liu C [10]
  • Shi J [10]
  • Li F [10]
  • Wang M [10]
  • Liu L [9]
  • Pan M [8]
  • Tong Z [8]
  • Du Y [7]
  • Yao J [5]
  • Pang P [4]
  • He K [4]
  • Liang L [4]
  • Tian C [2]
  • Sun G [2]
  • Yin H [2]
  • Wu X [2]
  • Wang XD [1]
  • Li D [1]
  • Chu GC [1]
  • Li Y [1]
  • Wang P [1]

Journal

  • NAT COMMUN [10]
  • CHEM [6]
  • NAT STRUCT MOL BIOL [5]
  • BIORXIV [4]
  • TO BE PUBLISHED [4]
  • MOL CELL [3]
  • NAT CHEM BIOL [3]
  • ANGEW CHEM INT ED ENGL [1]
  • PNAS [1]

Software

  • RELION [9]
  • CRYOSPARC [8]

Microscope

  • FEI TITAN KRIOS [20]
  • FEI TALOS ARCTICA [9]
  • TFS KRIOS [6]
  • FEI TECNAI ARCTICA [2]

Electron Source

  • FIELD EMISSION GUN [37]

Film or detector model

  • GATAN K3 6K X 4K [32]
  • FEI FALCON IV 4K X 4K [2]
  • GATAN K2 SUMMIT 4K X 4K [2]
  • GATAN K2 BASE 4K X 4K [1]

External links

  • PDB [37]
  • AlphaFold DB [27]
  • Pfam [27]
  • UniProt [27]
  • ChEBI [23]
  • ChEMBL [23]
  • Gene Ontology [23]
  • PDBe-Kb [23]
  • InterPro [22]
  • Complex Portal [14]
  • DrugBank [13]
  • EMPIAR [2]
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Showing 1 - 10 of 37. Page 1 of 4
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EMD-65273
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3D View
Cryo-EM structure of drosophila TRPgamma determined in GDN, state 1
CryoEM
Release date: July 8, 2026
Resolution: 2.18 Å
EM Method: Single-particle
Fitted PDBs: 9vqq
Q-score: 0.66
Similar entry percentile: 77%

Pang P, Gao B, Mo X, Lu X, Wang P, Li X, Shi Q, Xia K, Gai H, Xie C, Li D, Sun D, Tian C, Yao J

To Be Published

EMD-65279
Download Map
3D View
Cryo-EM structure of drosophila TRPgamma determined in GDN, state 2
CryoEM
Release date: July 8, 2026
Resolution: 2.38 Å
EM Method: Single-particle
Fitted PDBs: 9vqw
Q-score: 0.586
Similar entry percentile: 58%

Pang P, Gao B, Mo X, Lu X, Wang P, Li X, Shi Q, Xia K, Gai H, Xie C, Li D, Sun D, Tian C, Yao J

To Be Published

EMD-65280
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3D View
Cryo-EM structure of drosophila TRPgamma, calcium free, state 2
CryoEM
Release date: July 8, 2026
Resolution: 2.39 Å
EM Method: Single-particle
Fitted PDBs: 9vqx
Q-score: 0.595
Similar entry percentile: 64%

Pang P, Gao B, Mo X, Lu X, Wang P, Li X, Shi Q, Xia K, Gai H, Xie C, Li D, Sun D, Tian C, Yao J

To Be Published

EMD-65281
Download Map
3D View
Cryo-EM structure of drosophila TRPgamma in complex with camphor
CryoEM
Release date: July 8, 2026
Resolution: 3.44 Å
EM Method: Single-particle
Fitted PDBs: 9vqy
Q-score: 0.454
Similar entry percentile: 54%

Pang P, Gao B, Mo X, Lu X, Wang P, Li X, Shi Q, Xia K, Gai H, Xie C, Li D, Sun D, Tian C, Yao J

To Be Published

EMD-64082
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3D View
Cryo-EM structure of human TRPV3 in complex with sevoflurane determined in MSP2N2 nanodisc
CryoEM
Release date: April 8, 2026
Resolution: 3.29 Å
EM Method: Single-particle
Fitted PDBs: 9ued
Q-score: 0.498
Similar entry percentile: 67%

Wang P, Zhu J, Lu X, Chen C, Gao B, Tao W, Xia K, Song Y, Shi Q, Gai H, Xiao P, Liu F, Pang P, Li Y, Mo X, Wang XD, Xie C, Li D, Zhang Z, Yao J

PNAS (2026) 123 pp. e2525757123-e2525757123 [ Pubmed: 41989856 DOI: doi:10.1073/pnas.2525757123 ]

EMD-62509
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cryo-EM structure of RNF20/RNF40-RAD6A-Ub in complex with H2BS112GlcNAc nucleosome
CryoEM
Release date: Dec. 31, 2025
Resolution: 3.48 Å
EM Method: Single-particle
Fitted PDBs: 9kqo
Q-score: 0.406
Similar entry percentile: 33%

Deng Z, Tao S, Du Y, Li Y, Zhang L, Shi Q, Du X, Sun M, Tong Z, Pan M, Liu L, Ai H

Nat Chem Biol (2026) 22 pp. 740-750 [ DOI: doi:10.1038/s41589-025-02109-6 Pubmed: 41495224 ]

EMD-60781
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3D View
cryo-EM structure of the RNF168 1-193 /UbcH5c-Ub ubiquitylation module bound to H1.0-K63-Ub3 modified chromatosome
CryoEM
Release date: Oct. 2, 2024
Resolution: 4.3 Å
EM Method: Single-particle
Fitted PDBs: 9ipu
Q-score: 0.237
Similar entry percentile: 19%

Shi Q, Deng Z, Zhang L, Tong Z, Li JB, Chu GC, Ai H, Liu L

Angew Chem Int Ed Engl (2025) 64 pp. e202413651-e202413651 [ Pubmed: 39363740 DOI: doi:10.1002/anie.202413651 ]

EMD-38099
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3D View
Cryo-EM structures of RNF168/UbcH5c-Ub in complex with H2AK13Ub nucleosomes determined by intein-based E2-Ub-NCP conjugation strategy
CryoEM
Release date: Aug. 7, 2024
Resolution: 3.27 Å
EM Method: Single-particle
Fitted PDBs: 8x7i
Q-score: 0.443
Similar entry percentile: 39%

Ai H, Tong Z, Deng Z, Shi Q, Tao S, Liang J, Sun M, Wu X, Zheng Q, Liang L, Li JB, Gao S, Tian C, Liu L, Pan M

bioRxiv (2024) [ DOI: doi:10.1101/2024.01.02.573964 ]

EMD-38100
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3D View
Cryo-EM structures of RNF168/UbcH5c-Ub/nucleosomes complex determined by activity-based chemical trapping strategy
CryoEM
Release date: Aug. 7, 2024
Resolution: 3.39 Å
EM Method: Single-particle
Fitted PDBs: 8x7j
Q-score: 0.391
Similar entry percentile: 24%

Ai H, Tong Z, Deng Z, Shi Q, Tao S, Liang J, Sun M, Wu X, Zheng Q, Liang L, Li JB, Gao S, Tian C, Liu L, Pan M

bioRxiv (2024) [ DOI: doi:10.1101/2024.01.02.573964 ]

EMD-38101
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3D View
Raw data
EMPIAR-12143
Cryo-EM structures of RNF168/UbcH5c-Ub in complex with H2AK13Ub nucleosomes determined by activity-based chemical trapping strategy adjacent H2AK13/15 dual-monoubiquitination
CryoEM
Release date: Aug. 7, 2024
Resolution: 3.27 Å
EM Method: Single-particle
Fitted PDBs: 8x7k
Q-score: 0.423
Similar entry percentile: 30%

Ai H, Tong Z, Deng Z, Shi Q, Tao S, Liang J, Sun M, Wu X, Zheng Q, Liang L, Li JB, Gao S, Tian C, Liu L, Pan M

bioRxiv (2024) [ DOI: doi:10.1101/2024.01.02.573964 ]

Sort by: Download
Showing 1 - 10 of 37. Page 1 of 4
Display:
Statistics
×

Download


Preview 10 entries View All Download file

Filter By

Current Database

  • EMDB [37]

Current status

  • REL [37]

Sample type

  • Complex [37]
  • Protein [27]
  • Ligand [24]
  • DNA [12]

Organism

  • Homo sapiens [30]
  • Severe acute respiratory syndrome coronavirus [10]
  • Drosophila melanogaster [4]
  • Escherichia coli [2]
  • (no species) [1]
  • Saccharomyces cerevisiae [1]

EM Method

  • Single-particle [37]

Resolution

  • ≥ 2Å and < 3Å [3]
  • ≥ 3Å and < 4Å [22]
  • ≥ 4Å and < 5Å [8]
  • ≥ 6Å and < 8Å [4]

Model molecular weight

  • 50-100 kDa [1]
  • 100-250 kDa [13]
  • 250-500 kDa [4]
  • 500-1000 kDa [9]

Release Date

  • 2026 [5]
  • 2025 [1]
  • 2024 [7]
  • 2023 [24]

Author by name

  • Shi Q [37]
  • Liu L [32]
  • Deng Z [22]
  • Tong Z [22]
  • Li JB [21]
  • Pan M [21]
  • Sun M [20]
  • Ai HS [18]
  • Ai H [17]
  • Liang L [16]
  • Xie C [15]
  • Du Y [14]
  • Xu Z [13]
  • Zheng Q [12]
  • Zhang L [11]
  • Chen L [10]
  • Chen Q [10]
  • Chen X [10]
  • Feng C [10]
  • Gao X [10]
  • Guo L [10]
  • He J [10]
  • Hu F [10]
  • Hu P [10]
  • Huang Y [10]
  • Ke B [10]
  • Ke C [10]
  • Li F [10]
  • Li J [10]
  • Li Z [10]
  • Liang D [10]
  • Lin X [10]
  • Liu B [10]
  • Liu C [10]
  • Liu X [10]
  • Man P [10]
  • Pei R [10]
  • Peng X [10]
  • Shi J [10]
  • Su M [10]
  • Tang G [10]
  • Tang X [10]
  • Tao S [10]
  • Tian C [10]
  • Wang M [10]
  • Wang Q [10]
  • Wang Y [10]
  • Xiang H [10]
  • Xiong X [10]
  • Yan Q [10]
  • Yang N [10]
  • Yu H [10]
  • Zebin T [10]
  • Zhang Y [10]
  • Zheng P [10]
  • Deng ZH [8]
  • Chu GC [6]
  • Gao S [6]
  • Liang J [6]
  • Tian J [6]
  • Wu X [6]
  • Gai H [5]
  • Gao B [5]
  • Jiakun T [5]
  • Li D [5]
  • Liying Z [5]
  • Lu X [5]
  • Mo X [5]
  • Pang P [5]
  • Tong ZB [5]
  • Wang P [5]
  • Xia K [5]
  • Yao J [5]
  • He K [4]
  • Jia-bin L [4]
  • Li X [4]
  • Sun D [4]
  • Xue Q [4]
  • Zhiheng D [4]
  • Ziyu X [4]
  • Qu Q [3]
  • Guochao C [2]
  • Li Y [2]
  • Sun G [2]
  • Tian CL [2]
  • Yin H [2]
  • Chen C [1]
  • Du X [1]
  • He Z [1]
  • He ZZ [1]
  • Huasong A [1]
  • Lei L [1]
  • Liu F [1]
  • Song Y [1]
  • Tao W [1]
  • Wang XD [1]
  • Xiao P [1]
  • Zebing T [1]
  • Zhang Z [1]
  • Zhihend D [1]

Author by ORCID

  • Ai H [12]
  • Shi Q [11]
  • Deng Z [11]
  • Gao X [10]
  • Yu H [10]
  • Chen X [10]
  • Xiong X [10]
  • Tang X [10]
  • Liu L [10]
  • Sun M [10]
  • He J [10]
  • Chen L [10]
  • Liu C [10]
  • Shi J [10]
  • Li F [10]
  • Wang M [10]
  • Liu L [9]
  • Pan M [8]
  • Tong Z [8]
  • Du Y [7]
  • Yao J [5]
  • Pang P [4]
  • He K [4]
  • Liang L [4]
  • Tian C [2]
  • Sun G [2]
  • Yin H [2]
  • Wu X [2]
  • Wang XD [1]
  • Li D [1]
  • Chu GC [1]
  • Li Y [1]
  • Wang P [1]

Journal

  • NAT COMMUN [10]
  • CHEM [6]
  • NAT STRUCT MOL BIOL [5]
  • BIORXIV [4]
  • TO BE PUBLISHED [4]
  • MOL CELL [3]
  • NAT CHEM BIOL [3]
  • ANGEW CHEM INT ED ENGL [1]
  • PNAS [1]

Software

  • RELION [9]
  • CRYOSPARC [8]

Microscope

  • FEI TITAN KRIOS [20]
  • FEI TALOS ARCTICA [9]
  • TFS KRIOS [6]
  • FEI TECNAI ARCTICA [2]

Electron Source

  • FIELD EMISSION GUN [37]

Film or detector model

  • GATAN K3 6K X 4K [32]
  • FEI FALCON IV 4K X 4K [2]
  • GATAN K2 SUMMIT 4K X 4K [2]
  • GATAN K2 BASE 4K X 4K [1]

External links

  • PDB [37]
  • AlphaFold DB [27]
  • Pfam [27]
  • UniProt [27]
  • ChEBI [23]
  • ChEMBL [23]
  • Gene Ontology [23]
  • PDBe-Kb [23]
  • InterPro [22]
  • Complex Portal [14]
  • DrugBank [13]
  • EMPIAR [2]