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author:"Shen P"

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Current Database

  • EMDB [30]

Current status

  • REL [30]

Sample type

  • Complex [30]
  • Protein [30]
  • Ligand [17]
  • RNA [5]
  • DNA [3]

Organism

  • Saccharomyces cerevisiae [9]
  • Stenotrophomonas acidaminiphila [4]
  • Pseudoxanthomonas wuyuanensis [3]
  • Parasutterella secunda [3]
  • Geobacillus stearothermophilus [2]
  • Novilysobacter luteus [2]
  • Synthetic construct [2]
  • Claviceps fusiformis [2]
  • Homo sapiens [2]
  • Stenotrophomonas sp. cw117 [1]
  • Escherichia coli [1]
  • Acinetobacter baumannii [1]
  • Escherichia coli [1]

EM Method

  • Single-particle [30]

Resolution

  • ≥ 2Å and < 3Å [16]
  • ≥ 3Å and < 4Å [5]
  • ≥ 5Å and < 6Å [2]
  • ≥ 6Å and < 8Å [7]

Model molecular weight

  • 100-250 kDa [10]
  • 250-500 kDa [11]

Release Date

  • 2026 [4]
  • 2025 [5]
  • 2024 [8]
  • 2023 [4]
  • 2017 [9]

Author by name

  • Shen P [30]
  • Chen C-C [17]
  • Chen CC [17]
  • Guo RT [17]
  • Guo R-T [16]
  • Huang JW [15]
  • Li X [14]
  • Min J [13]
  • Shen PP [13]
  • Dai L [10]
  • Dai LH [10]
  • Hu Y [10]
  • Hu YM [10]
  • Li H [10]
  • Niu D [10]
  • Xie Z [10]
  • Han H [9]
  • Hill CP [9]
  • Huang J-W [9]
  • Monroe N [9]
  • Sundquist WI [9]
  • Yang Y [8]
  • Liu Z [6]
  • Wang C [6]
  • Xie ZZ [6]
  • Xu Y [6]
  • Xu YH [6]
  • Yang X [6]
  • Zhang L [6]
  • Bai M [4]
  • He B [4]
  • He BY [4]
  • Huang J [4]
  • Huang JP [4]
  • Lu X [3]
  • Lu XY [3]
  • Luo J [3]
  • Sun Y [3]
  • Zhang S [3]
  • Bao J [2]
  • Barth P [2]
  • Cui C [2]
  • Gao SS [2]
  • Gilman MSA [2]
  • Hagedoorn PL [2]
  • Hurley JD [2]
  • Jiang H [2]
  • Kim J [2]
  • Kruse AC [2]
  • Lehtinen MK [2]
  • Liu A [2]
  • Liu B [2]
  • Liu BB [2]
  • Liu ZW [2]
  • Ma Y [2]
  • Mcmahon C [2]
  • Nemeth GR [2]
  • Rawson S [2]
  • Rockman HA [2]
  • Schmitz RA [2]
  • Sheng X [2]
  • Skiba MA [2]
  • Staus DP [2]
  • Sterling SM [2]
  • Su H [2]
  • Wang CY [2]
  • Wang T [2]
  • Wingler LM [2]
  • Xu H [2]
  • Yan J [2]
  • Yang L [2]
  • Yang XC [2]
  • Yao Y [2]
  • Yu L [2]
  • Yu ZP [2]
  • Zhang LL [2]
  • Zhang W [2]
  • Babaoglu K [1]
  • Bahnck-teets C [1]
  • Balibar CJ [1]
  • Black TA [1]
  • Buevich A [1]
  • Bukhtiyarova M [1]
  • Cabalu TD [1]
  • Chao Y [1]
  • Chen Y [1]
  • Chen YT [1]
  • Chen Z [1]
  • Cooke A [1]
  • Dzhekieva L [1]
  • Gao Y [1]
  • Gut R-T [1]
  • Ishchenko A [1]
  • Klein D [1]
  • Klein DJ [1]
  • Labroli M [1]
  • Lange H [1]
  • Lei Y [1]
  • Leithead A [1]
  • Li G [1]

Author by ORCID

  • Min J [6]
  • Shen P [4]
  • Schmitz RA [2]
  • Jiang H [2]
  • Gao SS [2]
  • Hagedoorn PL [2]
  • Mcmahon C [2]
  • Wang CY [2]
  • Zhang S [2]
  • Barth P [2]
  • Kruse AC [2]
  • Rawson S [2]
  • Zhang W [2]
  • Wingler LM [2]
  • Hurley JD [2]
  • Sheng X [2]
  • Cui C [2]
  • Shen P [2]
  • Chen CC [2]
  • Zhang L [2]
  • Rockman HA [2]
  • Guo RT [2]
  • Zhou X [1]
  • Walker SS [1]
  • Xu M [1]
  • Ishchenko A [1]
  • Chao Y [1]
  • Skudlarek J [1]
  • Raheem I [1]
  • Wang C [1]
  • Gao Y [1]
  • Shen P [1]
  • Chen Z [1]
  • Mulhearn J [1]

Journal

  • TO BE PUBLISHED [9]
  • INT J BIOL MACROMOL [6]
  • ACS CATAL [5]
  • J HAZARD MATER [4]
  • NAT CHEM BIOL [2]
  • NATURE [2]
  • NAT COMMUN [1]
  • NAT MICROBIOL [1]

Software

  • RELION [9]
  • CRYOSPARC [2]

Microscope

  • FEI TITAN KRIOS [12]
  • FEI TECNAI F20 [9]
  • FEI MORGAGNI [5]
  • TFS KRIOS [4]

Electron Source

  • FIELD EMISSION GUN [30]

Film or detector model

  • GATAN K3 6K X 4K [15]
  • GATAN K2 SUMMIT 4K X 4K [9]
  • FEI FALCON IV 4K X 4K [3]
  • GATAN K3 BIOQUANTUM 6K X 4K [2]
  • TFS FALCON 4I 4K X 4K [1]

External links

  • PDB [30]
  • ChEBI [17]
  • UniProt [17]
  • PDBe-Kb [14]
  • DrugBank [13]
  • AlphaFold DB [12]
  • ChEMBL [12]
  • InterPro [12]
  • Gene Ontology [10]
  • Pfam [5]
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EMD-62782
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3D View
Cryo-electron microscopic structure of a novel amidohydrolase ADH3 triple mutation
CryoEM
Release date: May 13, 2026
Resolution: 2.71 Å
EM Method: Single-particle
Fitted PDBs: 9l36
Q-score: 0.449

Hu Y, Xu Y, He B, Niu D, Yang X, Huang J, Xie Z, Shen P, Li X, Bai M, Liu Z, Li H, Yang Y, Huang JW, Chen CC, Guo RT, Dai L

Int J Biol Macromol (2026) 358 pp. 151671-151671 [ DOI: doi:10.1016/j.ijbiomac.2026.151671 Pubmed: 41903634 ]

EMD-62778
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3D View
Cryo-EM structure and rational engineering of a novel efficient ochratoxin A-detoxifying amidohydrolase
CryoEM
Release date: May 6, 2026
Resolution: 2.86 Å
EM Method: Single-particle
Fitted PDBs: 9l2o
Q-score: 0.418

Hu Y, Xu Y, He B, Niu D, Yang X, Huang J, Xie Z, Shen P, Li X, Bai M, Liu Z, Li H, Yang Y, Huang JW, Chen CC, Guo RT, Dai L

Int J Biol Macromol (2026) 358 pp. 151671-151671 [ DOI: doi:10.1016/j.ijbiomac.2026.151671 Pubmed: 41903634 ]

EMD-62780
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3D View
Cryo-electron microscopic structure of a novel amidohydrolase with three mutations
CryoEM
Release date: May 6, 2026
Resolution: 2.69 Å
EM Method: Single-particle
Fitted PDBs: 9l2t
Q-score: 0.417

Hu Y, Xu Y, He B, Niu D, Yang X, Huang J, Xie Z, Shen P, Li X, Bai M, Liu Z, Li H, Yang Y, Huang JW, Chen CC, Guo RT, Dai L

Int J Biol Macromol (2026) 358 pp. 151671-151671 [ DOI: doi:10.1016/j.ijbiomac.2026.151671 Pubmed: 41903634 ]

EMD-62861
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Cryo-electron microscopic structure of a highly efficient ochratoxin detoxification enzyme LlADH
CryoEM
Release date: May 6, 2026
Resolution: 2.9 Å
EM Method: Single-particle
Fitted PDBs: 9l6p
Q-score: 0.464

Hu Y, Xu Y, He B, Niu D, Yang X, Huang J, Xie Z, Shen P, Li X, Bai M, Liu Z, Li H, Yang Y, Huang JW, Chen CC, Guo RT, Dai L

Int J Biol Macromol (2026) 358 pp. 151671-151671 [ DOI: doi:10.1016/j.ijbiomac.2026.151671 Pubmed: 41903634 ]

EMD-62471
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Cryo-EM structure of PsCas9-sgRNA binary complex
CryoEM
Release date: July 30, 2025
Resolution: 2.7 Å
EM Method: Single-particle
Fitted PDBs: 9ko9
Q-score: 0.495

Shen P, Lu X, Wang C, Huang JW, Min J, Luo J, Sun Y, Chen CC, Guo RT

ACS Catal (2025) 15 pp. 10109-10118 [ DOI: doi:10.1021/acscatal.5c02993 ]

EMD-62479
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Cryo-EM structure of PsCas9-sgRNA-dsDNA ternary complex
CryoEM
Release date: July 30, 2025
Resolution: 2.8 Å
EM Method: Single-particle
Fitted PDBs: 9kor
Q-score: 0.476

Shen P, Lu X, Wang C, Huang JW, Min J, Luo J, Sun Y, Chen CC, Guo RT

ACS Catal (2025) 15 pp. 10109-10118 [ DOI: doi:10.1021/acscatal.5c02993 ]

EMD-63976
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Cryo-EM structure of PsCas9-sgRNA-dsDNA 30 nt ternary complex
CryoEM
Release date: July 30, 2025
Resolution: 2.83 Å
EM Method: Single-particle
Fitted PDBs: 9ua2
Q-score: 0.487

Shen P, Lu X, Wang C, Huang JW, Min J, Luo J, Sun Y, Chen CC, Guo RT

ACS Catal (2025) 15 pp. 10109-10118 [ DOI: doi:10.1021/acscatal.5c02993 ]

EMD-61387
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Structure of chanoclavine synthase from Claviceps fusiformis
CryoEM
Release date: Jan. 1, 2025
Resolution: 2.64 Å
EM Method: Single-particle
Fitted PDBs: 9jdb
Q-score: 0.633

Chen CC, Yu ZP, Liu Z, Yao Y, Hagedoorn PL, Schmitz RA, Yang L, Yu L, Liu A, Sheng X, Su H, Ma Y, Wang T, Huang JW, Zhang L, Yan J, Bao J, Cui C, Li X, Shen P, Zhang W, Min J, Wang CY, Guo RT, Gao SS

Nature (2025) 640 pp. 840-846 [ Pubmed: 40044871 DOI: doi:10.1038/s41586-025-08670-3 ]

EMD-61388
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Structure of chanoclavine synthase from Claviceps fusiformis in complex with prechanoclavine
CryoEM
Release date: Jan. 1, 2025
Resolution: 2.33 Å
EM Method: Single-particle
Fitted PDBs: 9jdc
Q-score: 0.693

Chen CC, Yu ZP, Liu Z, Yao Y, Hagedoorn PL, Schmitz RA, Yang L, Yu L, Liu A, Sheng X, Su H, Ma Y, Wang T, Huang JW, Zhang L, Yan J, Bao J, Cui C, Li X, Shen P, Zhang W, Min J, Wang CY, Guo RT, Gao SS

Nature (2025) 640 pp. 840-846 [ Pubmed: 40044871 DOI: doi:10.1038/s41586-025-08670-3 ]

EMD-39101
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3D View
Cryo-EM structure and rational engineering of a novel efficient ochratoxin A-detoxifying amidohydrolase
CryoEM
Release date: Dec. 18, 2024
Resolution: 2.37 Å
EM Method: Single-particle
Fitted PDBs: 8yak
Q-score: 0.652

Hu Y, Dai L, Xu Y, Niu D, Yang X, Xie Z, Shen P, Li X, Li H, Zhang L, Min J, Guo RT, Chen CC

Int J Biol Macromol (2024) 278 pp. 134831-134831 [ DOI: doi:10.1016/j.ijbiomac.2024.134831 Pubmed: 39163957 ]

Sort by: Download
Showing 1 - 10 of 30. Page 1 of 3
Display:
Statistics
×

Download











































Preview first 10
Download

Filter By

Current Database

  • EMDB [30]

Current status

  • REL [30]

Sample type

  • Complex [30]
  • Protein [30]
  • Ligand [17]
  • RNA [5]
  • DNA [3]

Organism

  • Saccharomyces cerevisiae [9]
  • Stenotrophomonas acidaminiphila [4]
  • Pseudoxanthomonas wuyuanensis [3]
  • Parasutterella secunda [3]
  • Geobacillus stearothermophilus [2]
  • Novilysobacter luteus [2]
  • Synthetic construct [2]
  • Claviceps fusiformis [2]
  • Homo sapiens [2]
  • Stenotrophomonas sp. cw117 [1]
  • Escherichia coli [1]
  • Acinetobacter baumannii [1]
  • Escherichia coli [1]

EM Method

  • Single-particle [30]

Resolution

  • ≥ 2Å and < 3Å [16]
  • ≥ 3Å and < 4Å [5]
  • ≥ 5Å and < 6Å [2]
  • ≥ 6Å and < 8Å [7]

Model molecular weight

  • 100-250 kDa [10]
  • 250-500 kDa [11]

Release Date

  • 2026 [4]
  • 2025 [5]
  • 2024 [8]
  • 2023 [4]
  • 2017 [9]

Author by name

  • Shen P [30]
  • Chen C-C [17]
  • Chen CC [17]
  • Guo RT [17]
  • Guo R-T [16]
  • Huang JW [15]
  • Li X [14]
  • Min J [13]
  • Shen PP [13]
  • Dai L [10]
  • Dai LH [10]
  • Hu Y [10]
  • Hu YM [10]
  • Li H [10]
  • Niu D [10]
  • Xie Z [10]
  • Han H [9]
  • Hill CP [9]
  • Huang J-W [9]
  • Monroe N [9]
  • Sundquist WI [9]
  • Yang Y [8]
  • Liu Z [6]
  • Wang C [6]
  • Xie ZZ [6]
  • Xu Y [6]
  • Xu YH [6]
  • Yang X [6]
  • Zhang L [6]
  • Bai M [4]
  • He B [4]
  • He BY [4]
  • Huang J [4]
  • Huang JP [4]
  • Lu X [3]
  • Lu XY [3]
  • Luo J [3]
  • Sun Y [3]
  • Zhang S [3]
  • Bao J [2]
  • Barth P [2]
  • Cui C [2]
  • Gao SS [2]
  • Gilman MSA [2]
  • Hagedoorn PL [2]
  • Hurley JD [2]
  • Jiang H [2]
  • Kim J [2]
  • Kruse AC [2]
  • Lehtinen MK [2]
  • Liu A [2]
  • Liu B [2]
  • Liu BB [2]
  • Liu ZW [2]
  • Ma Y [2]
  • Mcmahon C [2]
  • Nemeth GR [2]
  • Rawson S [2]
  • Rockman HA [2]
  • Schmitz RA [2]
  • Sheng X [2]
  • Skiba MA [2]
  • Staus DP [2]
  • Sterling SM [2]
  • Su H [2]
  • Wang CY [2]
  • Wang T [2]
  • Wingler LM [2]
  • Xu H [2]
  • Yan J [2]
  • Yang L [2]
  • Yang XC [2]
  • Yao Y [2]
  • Yu L [2]
  • Yu ZP [2]
  • Zhang LL [2]
  • Zhang W [2]
  • Babaoglu K [1]
  • Bahnck-teets C [1]
  • Balibar CJ [1]
  • Black TA [1]
  • Buevich A [1]
  • Bukhtiyarova M [1]
  • Cabalu TD [1]
  • Chao Y [1]
  • Chen Y [1]
  • Chen YT [1]
  • Chen Z [1]
  • Cooke A [1]
  • Dzhekieva L [1]
  • Gao Y [1]
  • Gut R-T [1]
  • Ishchenko A [1]
  • Klein D [1]
  • Klein DJ [1]
  • Labroli M [1]
  • Lange H [1]
  • Lei Y [1]
  • Leithead A [1]
  • Li G [1]

Author by ORCID

  • Min J [6]
  • Shen P [4]
  • Schmitz RA [2]
  • Jiang H [2]
  • Gao SS [2]
  • Hagedoorn PL [2]
  • Mcmahon C [2]
  • Wang CY [2]
  • Zhang S [2]
  • Barth P [2]
  • Kruse AC [2]
  • Rawson S [2]
  • Zhang W [2]
  • Wingler LM [2]
  • Hurley JD [2]
  • Sheng X [2]
  • Cui C [2]
  • Shen P [2]
  • Chen CC [2]
  • Zhang L [2]
  • Rockman HA [2]
  • Guo RT [2]
  • Zhou X [1]
  • Walker SS [1]
  • Xu M [1]
  • Ishchenko A [1]
  • Chao Y [1]
  • Skudlarek J [1]
  • Raheem I [1]
  • Wang C [1]
  • Gao Y [1]
  • Shen P [1]
  • Chen Z [1]
  • Mulhearn J [1]

Journal

  • TO BE PUBLISHED [9]
  • INT J BIOL MACROMOL [6]
  • ACS CATAL [5]
  • J HAZARD MATER [4]
  • NAT CHEM BIOL [2]
  • NATURE [2]
  • NAT COMMUN [1]
  • NAT MICROBIOL [1]

Software

  • RELION [9]
  • CRYOSPARC [2]

Microscope

  • FEI TITAN KRIOS [12]
  • FEI TECNAI F20 [9]
  • FEI MORGAGNI [5]
  • TFS KRIOS [4]

Electron Source

  • FIELD EMISSION GUN [30]

Film or detector model

  • GATAN K3 6K X 4K [15]
  • GATAN K2 SUMMIT 4K X 4K [9]
  • FEI FALCON IV 4K X 4K [3]
  • GATAN K3 BIOQUANTUM 6K X 4K [2]
  • TFS FALCON 4I 4K X 4K [1]

External links

  • PDB [30]
  • ChEBI [17]
  • UniProt [17]
  • PDBe-Kb [14]
  • DrugBank [13]
  • AlphaFold DB [12]
  • ChEMBL [12]
  • InterPro [12]
  • Gene Ontology [10]
  • Pfam [5]