Edit your search query here and hit Return to execute it:
author:"Senda T"

Filter By

Current Database

  • EMDB [57]
  • EMPIAR [11]

Current status

  • REL [68]

Sample type

  • Complex [47]
  • Protein [36]
  • Ligand [22]
  • Cellular component [10]
  • RNA [3]
  • DNA [1]

Organism

  • Bacillus sp. (strain ps3) [16]
  • Homo sapiens [8]
  • Synthetic construct [5]
  • Macaca mulatta [5]
  • Trichodesmium erythraeum [4]
  • Aquifex aeolicus [3]
  • Streptomyces graminofaciens [3]
  • Mus musculus [2]
  • Leptolyngbya sp. o-77 [2]
  • Macrophomina phaseolina [2]
  • Achromobacter cycloclastes [2]
  • Sulfurisphaera tokodaii [2]
  • Human intestinal bacterium pue [2]
  • Sus scrofa [2]
  • Prasiola crispa [1]
  • Pyrococcus furiosus [1]
  • Aquifex aeolicus [1]
  • Archaeoglobus fulgidus [1]
  • Eubacterium cellulosolvens [1]
  • Hydrogenobacter thermophilus [1]
  • Streptomyces sp. sp080513ge-23 [1]
  • Enterococcus hirae [1]
  • Hydrogenobacter thermophilus [1]
  • Sus scrofa [1]

EM Method

  • Single-particle [57]

Resolution

  • ≥ 2Å and < 3Å [26]
  • ≥ 3Å and < 4Å [22]
  • ≥ 4Å and < 5Å [6]
  • ≥ 5Å and < 6Å [1]
  • ≥ 6Å and < 8Å [2]

Model molecular weight

  • 100-250 kDa [8]
  • 250-500 kDa [17]
  • 500-1000 kDa [2]
  • 1-2 MDa [1]

Release Date

  • 2025 [23]
  • 2024 [10]
  • 2023 [2]
  • 2022 [11]
  • 2021 [10]
  • 2020 [12]

Author by name

  • Senda T [68]
  • Adachi N [67]
  • Moriya T [42]
  • Kawasaki M [41]
  • Murata T [27]
  • Hamaguchi-suzuki N [18]
  • Marui R [16]
  • Noji H [16]
  • Ueno H [16]
  • Yasuda K [16]
  • Suzuki K [11]
  • Ogasawara S [9]
  • Yasuda S [9]
  • Abe I [7]
  • Kakuta Y [7]
  • Mori T [7]
  • Teramoto T [7]
  • Ikeguchi M [6]
  • Isobe Y [5]
  • Kamada M [5]
  • Kikkawa M [5]
  • Kochi M [5]
  • Matsui H [5]
  • Ohto U [5]
  • Shibata T [5]
  • Shigematsu H [5]
  • Shimizu T [5]
  • Tahara M [5]
  • Tojo S [5]
  • Tsutsumi A [5]
  • Yamamoto M [5]
  • Zhang Z [5]
  • Akutsu M [4]
  • Asai T [4]
  • Fujii A [4]
  • Kato T [4]
  • Kohzuma T [4]
  • Koiwai K [4]
  • Koyasu T [4]
  • Miyakawa T [4]
  • Miyashita Y [4]
  • Miyauchi Y [4]
  • Muramatsu T [4]
  • Saito T [4]
  • Sato Y [4]
  • Shinoda A [4]
  • Tanokura M [4]
  • Yamada Y [4]
  • Yamaguchi T [4]
  • Yang J [4]
  • Yasuda Y [4]
  • Yumoto F [4]
  • Arakawa T [3]
  • Chisuga T [3]
  • Eguchi T [3]
  • Fushinobu S [3]
  • Hashimoto Y [3]
  • Hung NK [3]
  • Ito S [3]
  • Karasawa M [3]
  • Kudo F [3]
  • Liao Z [3]
  • Minato T [3]
  • Miyanaga A [3]
  • Nakano S [3]
  • Numata T [3]
  • Ogo S [3]
  • Takinami S [3]
  • Terada T [3]
  • Yamada C [3]
  • Yamada K [3]
  • Yoon KS [3]
  • Anzai N [2]
  • Arai R [2]
  • Awakawa T [2]
  • Bian G [2]
  • Biwa C [2]
  • Chen R [2]
  • Chen S [2]
  • Cheng S [2]
  • Deng Z [2]
  • Dickschat JS [2]
  • Harada A [2]
  • He H [2]
  • Hori S [2]
  • Hou A [2]
  • Hu B [2]
  • Igaki S [2]
  • Ikeda A [2]
  • Ishii R [2]
  • Katsuyama Y [2]
  • Kawai S [2]
  • Kawakami N [2]
  • Kobayashi M [2]
  • Kumano T [2]
  • Lauterbach L [2]
  • Li M [2]
  • Liu T [2]
  • Lu L [2]
  • Maru T [2]

Author by ORCID

  • Adachi N [48]
  • Senda T [47]
  • Moriya T [22]
  • Murata T [21]
  • Hamaguchi-suzuki N [18]
  • Ueno H [16]
  • Noji H [16]
  • Kikkawa M [5]
  • Kakuta Y [5]
  • Kawasaki M [5]
  • Tojo S [5]
  • Teramoto T [5]
  • Tsutsumi A [5]
  • Ikeguchi M [5]
  • Shigematsu H [5]
  • Shibata T [5]
  • Tanokura M [4]
  • Miyakawa T [4]
  • Mori T [4]
  • Abe I [4]
  • Yang J [4]
  • Liao Z [3]
  • Nakano S [3]
  • Eguchi T [3]
  • Ito S [3]
  • Karasawa M [3]
  • Miyanaga A [3]
  • Arai R [2]
  • Ogasawara S [2]
  • Tao H [2]
  • Liu T [2]
  • Dickschat JS [2]
  • Kawakami N [2]
  • Yamada Y [2]
  • Chen R [2]
  • Minato T [2]
  • Nakamura T [2]
  • Bian G [2]
  • Shinoda A [2]
  • Lauterbach L [2]
  • Yoon KS [2]
  • Hou A [2]
  • Kumano T [2]
  • Maru T [2]
  • Kobayashi M [2]
  • Anzai N [2]
  • Ishii R [2]
  • Awakawa T [2]
  • Wang X [2]
  • Senda M [2]
  • Kamei Y [1]
  • Arakawa T [1]
  • Otomo A [1]
  • Ohnishi Y [1]
  • Harada A [1]
  • Suzuki K [1]
  • Takaichi S [1]
  • Koike H [1]
  • Numata T [1]
  • Kashino Y [1]
  • Shin-ya K [1]
  • Ikeda A [1]
  • Hara K [1]
  • Kosugi M [1]
  • Shibata Y [1]
  • Kudoh S [1]
  • Miyamoto K [1]
  • Iino R [1]
  • Fushinobu S [1]
  • Iwata S [1]
  • Ohara N [1]
  • Yasuda S [1]
  • Kawai S [1]
  • Urano N [1]
  • Katsuyama Y [1]
  • Yamashita M [1]

Journal

  • NAT COMMUN [35]
  • STRUCTURE [8]
  • ANGEW CHEM INT ED ENGL [4]
  • BIOCHEM BIOPHYS RES COMMUN [3]
  • J STRUCT BIOL X [3]
  • NATURE [3]
  • BIORXIV [2]
  • COMMUN BIOL [2]
  • J BIOL CHEM [2]
  • J ENZYME INHIB MED CHEM [2]
  • J STRUCT BIOL [2]
  • ANGEWANDTE CHEMIE (INTERNATIONAL ED. IN ENGLISH) [1]
  • BIOMATER SCI [1]
  • CHEM COMMUN [1]
  • CHEM COMMUN (CAMB) [1]
  • CHEM.COMMUN.(CAMB.) [1]
  • CHEMPLUSCHEM [1]
  • COMMUN. BIOL. [1]
  • COMMUNICATIONS BIOLOGY [1]
  • J AM CHEM SOC [1]
  • NAT STRUCT MOL BIOL [1]
  • TO BE PUBLISHED [1]

Software

  • RELION [33]
  • GCTF [10]
  • CTFFIND [5]
  • CRYOSPARC [3]
  • COOT [1]

Microscope

  • TFS KRIOS [23]
  • FEI TALOS ARCTICA [13]
  • TFS TALOS [9]
  • FEI TITAN KRIOS [8]
  • TFS GLACIOS [3]
  • JEOL CRYO ARM 300 [1]

Electron Source

  • FIELD EMISSION GUN [57]

Film or detector model

  • FEI FALCON III 4K X 4K [22]
  • FEI FALCON IV 4K X 4K [22]
  • GATAN K3 6K X 4K [6]
  • GATAN K3 BIOQUANTUM 6K X 4K [6]
  • GATAN K2 SUMMIT 4K X 4K [1]

EMPIAR Experiment type

  • EMDB [11]

EMPIAR Image category

  • MICROGRAPHS - MULTIFRAME [11]

External links

  • PDB [28]
  • UniProt [25]
  • AlphaFold DB [23]
  • PDBe-Kb [23]
  • Pfam [20]
  • Gene Ontology [17]
  • InterPro [16]
  • DrugBank [15]
  • ChEBI [14]
  • EMPIAR [14]
  • ChEMBL [11]
  • EMDB [11]
  • Complex Portal [4]
Sort by: Download
Showing 1 - 10 of 68. Page 1 of 7
Display:
Statistics
×

Download












































Preview first 10
Download
EMD-62652
Download Map
3D View
The cryo-EM structure of porcine serum MGAM
Release date: Dec. 10, 2025
Resolution: 3.17 Å
EM Method: Single-particle
Fitted PDBs: 9kz6
Q-score: 0.565

Watanabe K, Tagami T, Biwa C, Kawasaki M, Adachi N, Moriya T, Senda T, Okuyama M

J Enzyme Inhib Med Chem (2026) 41 pp. 2612391- [ DOI: doi:10.1080/14756366.2025.2612391 ]

EMD-62653
Download Map
3D View
The cryo-EM structure of porcine serum MGAM bound with Acarviosyl-maltotriose.
Release date: Dec. 10, 2025
Resolution: 2.77 Å
EM Method: Single-particle
Fitted PDBs: 9kz7
Q-score: 0.654

Watanabe K, Tagami T, Biwa C, Kawasaki M, Adachi N, Moriya T, Senda T, Okuyama M

J Enzyme Inhib Med Chem (2026) 41 pp. 2612391- [ DOI: doi:10.1080/14756366.2025.2612391 ]

EMD-66472
Download Map
3D View
Target analog-bound type III-B Cmr complex of Archaeoglobus fulgidus
Release date: Dec. 10, 2025
Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 9x25
Q-score: 0.447

Ishihara K, Kitagawa S, Adachi N, Akutsu M, Senda T, Inanaga H, Numata T

Biochem Biophys Res Commun (2025) 792 pp. 152978-152978 [ DOI: doi:10.1016/j.bbrc.2025.152978 Pubmed: 41242302 ]

EMD-64381
Download Map
3D View
Cryo-EM structure of pyrene-modified TIP60 double mutant G12C/S50C with addition of Nile Red
Release date: Nov. 19, 2025
Resolution: 3.8 Å
EM Method: Single-particle
Fitted PDBs: 9uol
Q-score: 0.428

Yamashita M, Kawakami N, Arai R, Ikeda A, Moriya T, Senda T, Miyamoto K

Biomater Sci (2025) 13 pp. 6652-6661 [ Pubmed: 41099093 DOI: doi:10.1039/d5bm01052g ]

EMD-60989
Download Map
3D View
Class 2 state of the GfsA KSQ-ancestralAT chimeric didomain in complex with the GfsA ACP domain
Release date: Aug. 6, 2025
Resolution: 2.73 Å
EM Method: Single-particle

Chisuga T, Takinami S, Liao Z, Karasawa M, Adachi N, Kawasaki M, Moriya T, Senda T, Terada T, Kudo F, Eguchi T, Nakano S, Ito S, Miyanaga A

Nat Commun (2025) 16 pp. 6847-6847 [ DOI: doi:10.1038/s41467-025-62168-0 Pubmed: 40715098 ]

EMD-61520
Download Map
3D View
Class 3 state of the GfsA KSQ-ancestralAT chimeric didomain in complex with the GfsA ACP domain
Release date: Aug. 6, 2025
Resolution: 2.71 Å
EM Method: Single-particle
Fitted PDBs: 9jj9
Q-score: 0.529

Chisuga T, Takinami S, Liao Z, Karasawa M, Adachi N, Kawasaki M, Moriya T, Senda T, Terada T, Kudo F, Eguchi T, Nakano S, Ito S, Miyanaga A

Nat Commun (2025) 16 pp. 6847-6847 [ DOI: doi:10.1038/s41467-025-62168-0 Pubmed: 40715098 ]

EMD-61522
Download Map
3D View
Class 1 state of the GfsA KSQ-ancestralAT chimeric didomain in complex with the GfsA ACP domain
Release date: Aug. 6, 2025
Resolution: 2.68 Å
EM Method: Single-particle
Fitted PDBs: 9jjb
Q-score: 0.557

Chisuga T, Takinami S, Liao Z, Karasawa M, Adachi N, Kawasaki M, Moriya T, Senda T, Terada T, Kudo F, Eguchi T, Nakano S, Ito S, Miyanaga A

Nat Commun (2025) 16 pp. 6847-6847 [ DOI: doi:10.1038/s41467-025-62168-0 Pubmed: 40715098 ]

EMD-61339
Download Map
3D View
Engineering of ATP synthase
Release date: July 9, 2025
Resolution: 2.79 Å
EM Method: Single-particle
Fitted PDBs: 9jc1
Q-score: 0.527

Ueno H, Yasuda K, Hamaguchi-Suzuki N, Marui R, Adachi N, Senda T, Murata T, Noji H

Nat Commun (2025) 16 pp. 5410-5410 [ DOI: doi:10.1038/s41467-025-61227-w Pubmed: 40610443 ]

EMD-61340
Download Map
3D View
Engineering of ATP synthase Fo
Release date: July 9, 2025
Resolution: 3.96 Å
EM Method: Single-particle
Fitted PDBs: 9jc2
Q-score: 0.281

Ueno H, Yasuda K, Hamaguchi-Suzuki N, Marui R, Adachi N, Senda T, Murata T, Noji H

Nat Commun (2025) 16 pp. 5410-5410 [ DOI: doi:10.1038/s41467-025-61227-w Pubmed: 40610443 ]

EMD-61341
Download Map
3D View
Engineering of ATP synthase single stalk1
Release date: July 9, 2025
Resolution: 2.54 Å
EM Method: Single-particle

Ueno H, Yasuda K, Hamaguchi-Suzuki N, Marui R, Adachi N, Senda T, Murata T, Noji H

Nat Commun (2025) 16 pp. 5410-5410 [ DOI: doi:10.1038/s41467-025-61227-w Pubmed: 40610443 ]

Sort by: Download
Showing 1 - 10 of 68. Page 1 of 7
Display:
Statistics
×

Download












































Preview first 10
Download

Filter By

Current Database

  • EMDB [57]
  • EMPIAR [11]

Current status

  • REL [68]

Sample type

  • Complex [47]
  • Protein [36]
  • Ligand [22]
  • Cellular component [10]
  • RNA [3]
  • DNA [1]

Organism

  • Bacillus sp. (strain ps3) [16]
  • Homo sapiens [8]
  • Synthetic construct [5]
  • Macaca mulatta [5]
  • Trichodesmium erythraeum [4]
  • Aquifex aeolicus [3]
  • Streptomyces graminofaciens [3]
  • Mus musculus [2]
  • Leptolyngbya sp. o-77 [2]
  • Macrophomina phaseolina [2]
  • Achromobacter cycloclastes [2]
  • Sulfurisphaera tokodaii [2]
  • Human intestinal bacterium pue [2]
  • Sus scrofa [2]
  • Prasiola crispa [1]
  • Pyrococcus furiosus [1]
  • Aquifex aeolicus [1]
  • Archaeoglobus fulgidus [1]
  • Eubacterium cellulosolvens [1]
  • Hydrogenobacter thermophilus [1]
  • Streptomyces sp. sp080513ge-23 [1]
  • Enterococcus hirae [1]
  • Hydrogenobacter thermophilus [1]
  • Sus scrofa [1]

EM Method

  • Single-particle [57]

Resolution

  • ≥ 2Å and < 3Å [26]
  • ≥ 3Å and < 4Å [22]
  • ≥ 4Å and < 5Å [6]
  • ≥ 5Å and < 6Å [1]
  • ≥ 6Å and < 8Å [2]

Model molecular weight

  • 100-250 kDa [8]
  • 250-500 kDa [17]
  • 500-1000 kDa [2]
  • 1-2 MDa [1]

Release Date

  • 2025 [23]
  • 2024 [10]
  • 2023 [2]
  • 2022 [11]
  • 2021 [10]
  • 2020 [12]

Author by name

  • Senda T [68]
  • Adachi N [67]
  • Moriya T [42]
  • Kawasaki M [41]
  • Murata T [27]
  • Hamaguchi-suzuki N [18]
  • Marui R [16]
  • Noji H [16]
  • Ueno H [16]
  • Yasuda K [16]
  • Suzuki K [11]
  • Ogasawara S [9]
  • Yasuda S [9]
  • Abe I [7]
  • Kakuta Y [7]
  • Mori T [7]
  • Teramoto T [7]
  • Ikeguchi M [6]
  • Isobe Y [5]
  • Kamada M [5]
  • Kikkawa M [5]
  • Kochi M [5]
  • Matsui H [5]
  • Ohto U [5]
  • Shibata T [5]
  • Shigematsu H [5]
  • Shimizu T [5]
  • Tahara M [5]
  • Tojo S [5]
  • Tsutsumi A [5]
  • Yamamoto M [5]
  • Zhang Z [5]
  • Akutsu M [4]
  • Asai T [4]
  • Fujii A [4]
  • Kato T [4]
  • Kohzuma T [4]
  • Koiwai K [4]
  • Koyasu T [4]
  • Miyakawa T [4]
  • Miyashita Y [4]
  • Miyauchi Y [4]
  • Muramatsu T [4]
  • Saito T [4]
  • Sato Y [4]
  • Shinoda A [4]
  • Tanokura M [4]
  • Yamada Y [4]
  • Yamaguchi T [4]
  • Yang J [4]
  • Yasuda Y [4]
  • Yumoto F [4]
  • Arakawa T [3]
  • Chisuga T [3]
  • Eguchi T [3]
  • Fushinobu S [3]
  • Hashimoto Y [3]
  • Hung NK [3]
  • Ito S [3]
  • Karasawa M [3]
  • Kudo F [3]
  • Liao Z [3]
  • Minato T [3]
  • Miyanaga A [3]
  • Nakano S [3]
  • Numata T [3]
  • Ogo S [3]
  • Takinami S [3]
  • Terada T [3]
  • Yamada C [3]
  • Yamada K [3]
  • Yoon KS [3]
  • Anzai N [2]
  • Arai R [2]
  • Awakawa T [2]
  • Bian G [2]
  • Biwa C [2]
  • Chen R [2]
  • Chen S [2]
  • Cheng S [2]
  • Deng Z [2]
  • Dickschat JS [2]
  • Harada A [2]
  • He H [2]
  • Hori S [2]
  • Hou A [2]
  • Hu B [2]
  • Igaki S [2]
  • Ikeda A [2]
  • Ishii R [2]
  • Katsuyama Y [2]
  • Kawai S [2]
  • Kawakami N [2]
  • Kobayashi M [2]
  • Kumano T [2]
  • Lauterbach L [2]
  • Li M [2]
  • Liu T [2]
  • Lu L [2]
  • Maru T [2]

Author by ORCID

  • Adachi N [48]
  • Senda T [47]
  • Moriya T [22]
  • Murata T [21]
  • Hamaguchi-suzuki N [18]
  • Ueno H [16]
  • Noji H [16]
  • Kikkawa M [5]
  • Kakuta Y [5]
  • Kawasaki M [5]
  • Tojo S [5]
  • Teramoto T [5]
  • Tsutsumi A [5]
  • Ikeguchi M [5]
  • Shigematsu H [5]
  • Shibata T [5]
  • Tanokura M [4]
  • Miyakawa T [4]
  • Mori T [4]
  • Abe I [4]
  • Yang J [4]
  • Liao Z [3]
  • Nakano S [3]
  • Eguchi T [3]
  • Ito S [3]
  • Karasawa M [3]
  • Miyanaga A [3]
  • Arai R [2]
  • Ogasawara S [2]
  • Tao H [2]
  • Liu T [2]
  • Dickschat JS [2]
  • Kawakami N [2]
  • Yamada Y [2]
  • Chen R [2]
  • Minato T [2]
  • Nakamura T [2]
  • Bian G [2]
  • Shinoda A [2]
  • Lauterbach L [2]
  • Yoon KS [2]
  • Hou A [2]
  • Kumano T [2]
  • Maru T [2]
  • Kobayashi M [2]
  • Anzai N [2]
  • Ishii R [2]
  • Awakawa T [2]
  • Wang X [2]
  • Senda M [2]
  • Kamei Y [1]
  • Arakawa T [1]
  • Otomo A [1]
  • Ohnishi Y [1]
  • Harada A [1]
  • Suzuki K [1]
  • Takaichi S [1]
  • Koike H [1]
  • Numata T [1]
  • Kashino Y [1]
  • Shin-ya K [1]
  • Ikeda A [1]
  • Hara K [1]
  • Kosugi M [1]
  • Shibata Y [1]
  • Kudoh S [1]
  • Miyamoto K [1]
  • Iino R [1]
  • Fushinobu S [1]
  • Iwata S [1]
  • Ohara N [1]
  • Yasuda S [1]
  • Kawai S [1]
  • Urano N [1]
  • Katsuyama Y [1]
  • Yamashita M [1]

Journal

  • NAT COMMUN [35]
  • STRUCTURE [8]
  • ANGEW CHEM INT ED ENGL [4]
  • BIOCHEM BIOPHYS RES COMMUN [3]
  • J STRUCT BIOL X [3]
  • NATURE [3]
  • BIORXIV [2]
  • COMMUN BIOL [2]
  • J BIOL CHEM [2]
  • J ENZYME INHIB MED CHEM [2]
  • J STRUCT BIOL [2]
  • ANGEWANDTE CHEMIE (INTERNATIONAL ED. IN ENGLISH) [1]
  • BIOMATER SCI [1]
  • CHEM COMMUN [1]
  • CHEM COMMUN (CAMB) [1]
  • CHEM.COMMUN.(CAMB.) [1]
  • CHEMPLUSCHEM [1]
  • COMMUN. BIOL. [1]
  • COMMUNICATIONS BIOLOGY [1]
  • J AM CHEM SOC [1]
  • NAT STRUCT MOL BIOL [1]
  • TO BE PUBLISHED [1]

Software

  • RELION [33]
  • GCTF [10]
  • CTFFIND [5]
  • CRYOSPARC [3]
  • COOT [1]

Microscope

  • TFS KRIOS [23]
  • FEI TALOS ARCTICA [13]
  • TFS TALOS [9]
  • FEI TITAN KRIOS [8]
  • TFS GLACIOS [3]
  • JEOL CRYO ARM 300 [1]

Electron Source

  • FIELD EMISSION GUN [57]

Film or detector model

  • FEI FALCON III 4K X 4K [22]
  • FEI FALCON IV 4K X 4K [22]
  • GATAN K3 6K X 4K [6]
  • GATAN K3 BIOQUANTUM 6K X 4K [6]
  • GATAN K2 SUMMIT 4K X 4K [1]

EMPIAR Experiment type

  • EMDB [11]

EMPIAR Image category

  • MICROGRAPHS - MULTIFRAME [11]

External links

  • PDB [28]
  • UniProt [25]
  • AlphaFold DB [23]
  • PDBe-Kb [23]
  • Pfam [20]
  • Gene Ontology [17]
  • InterPro [16]
  • DrugBank [15]
  • ChEBI [14]
  • EMPIAR [14]
  • ChEMBL [11]
  • EMDB [11]
  • Complex Portal [4]