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author:"Schaffer M"

Filter By

Current Database

  • EMDB [103]
  • EMPIAR [3]

Current status

  • REL [106]

Sample type

  • Complex [55]
  • Cellular component [24]
  • Cell [22]
  • Protein [13]
  • Ligand [5]
  • Tissue [2]
  • Other [1]
  • Sample [1]

Organism

  • Chlamydomonas reinhardtii [54]
  • Synechocystis sp. pcc 6803 [9]
  • Homo sapiens [8]
  • Chaetomium thermophilum [7]
  • Saccharomyces cerevisiae [6]
  • Paramecium tetraurelia [6]
  • Caenorhabditis elegans [6]
  • Synechocystis sp. pcc 6803 [5]
  • Chaetomium thermophilum [2]

EM Method

  • Subtomogram averaging [71]
  • Tomography [27]
  • Single-particle [5]

Resolution

  • ≥ 3Å and < 4Å [2]
  • ≥ 4Å and < 5Å [2]
  • ≥ 5Å and < 6Å [1]
  • ≥ 8Å and < 12Å [10]
  • ≥ 12Å and < 16Å [6]
  • ≥ 16Å and < 20Å [5]
  • ≥ 20Å and < 30Å [25]
  • ≥ 30Å [26]

Model molecular weight

  • 500-1000 kDa [1]
  • 2-5 MDa [5]

Release Date

  • 2022 [13]
  • 2021 [16]
  • 2020 [13]
  • 2019 [15]
  • 2018 [20]
  • 2017 [24]
  • 2016 [4]
  • 2015 [1]

Author by name

  • Schaffer M [105]
  • Engel BD [100]
  • Plitzko JM [86]
  • Baumeister W [71]
  • Albert S [47]
  • Pfeffer S [26]
  • Wietrzynski W [23]
  • Erdmann PS [21]
  • Guichard P [21]
  • Hamel V [21]
  • Klena N [21]
  • Van Den Hoek H [21]
  • Briggs JAG [20]
  • Bykov YS [20]
  • Plitzko J [20]
  • Beck F [19]
  • Wan W [19]
  • Nickelsen J [18]
  • Rast A [18]
  • Geimer S [17]
  • Schuller JM [16]
  • Strauss M [15]
  • Beck M [14]
  • Mosalaganti S [14]
  • Alvarez Viar G [13]
  • Gries K [13]
  • Gupta TK [13]
  • Jordan MA [13]
  • Klumpe S [13]
  • Pigino G [13]
  • Righetto RD [13]
  • Rudack T [13]
  • Schroda M [13]
  • Heinz S [12]
  • Niemeyer J [12]
  • Ohnishi N [12]
  • Ostermeier M [12]
  • Sakamoto W [12]
  • Spaniol B [12]
  • Wan WN [12]
  • Van Den Hoek Hg [12]
  • Asano S [11]
  • Foerster F [11]
  • Mahamid J [11]
  • Ariotti N [10]
  • Briggs JA [10]
  • Collins BM [10]
  • Dodonova SO [10]
  • Forster F [10]
  • Kovtun O [10]
  • Leneva N [10]
  • Owen DJ [10]
  • Teasdale RD [10]
  • Thomas HF [10]
  • Cuellar LK [8]
  • Goldie KN [8]
  • Kovacik L [8]
  • Le Guennec M [8]
  • Stahlberg H [8]
  • Tassin AM [8]
  • Salome PA [7]
  • Brittingham GP [6]
  • Chung JK [6]
  • Delarue M [6]
  • Groves JT [6]
  • Gutierrez JI [6]
  • Holt LJ [6]
  • Jacobs-wagner C [6]
  • Kennedy KJ [6]
  • Kleindiek S [6]
  • Laugks T [6]
  • Pinglay S [6]
  • Poterewicz G [6]
  • Rummel A [6]
  • Sang D [6]
  • Smith AJ [6]
  • Surovtsev IV [6]
  • Villa E [6]
  • Danev R [5]
  • Hyman A [5]
  • Hyman AA [5]
  • Kuhn-cuellar L [5]
  • Aeschlimann G [4]
  • Azimzadeh J [4]
  • Borgers S [4]
  • Bornens M [4]
  • Gambarotto D [4]
  • Kanazawa A [4]
  • Kosinski J [4]
  • Laporte MH [4]
  • Lee C-W [4]
  • Merchant SS [4]
  • Sadian Y [4]
  • Salome P [4]
  • Schuller J [4]
  • Strenkert D [4]
  • Tegunov D [4]
  • Van Der Hoek H [4]
  • Dudek J [3]
  • Freeze HH [3]

Author by ORCID

  • Engel BD [93]
  • Plitzko JM [80]
  • Schaffer M [55]
  • Pfeffer S [26]
  • Hamel V [20]
  • Guichard P [20]
  • Klena N [20]
  • Bykov YS [20]
  • Van Den Hoek H [20]
  • Wan W [18]
  • Schuller JM [15]
  • Strauss M [14]
  • Geimer S [12]
  • Jordan MA [12]
  • Schroda M [12]
  • Baumeister W [12]
  • Erdmann PS [12]
  • Sakamoto W [12]
  • Heinz S [12]
  • Pigino G [12]
  • Klumpe S [12]
  • Ostermeier M [12]
  • Righetto RD [12]
  • Kovtun O [10]
  • Teasdale RD [10]
  • Leneva N [10]
  • Dodonova SO [10]
  • Mosalaganti S [10]
  • Forster F [10]
  • Collins BM [10]
  • Owen DJ [10]
  • Ariotti N [10]
  • Briggs JA [10]
  • Briggs JAG [10]
  • Stahlberg H [8]
  • Le Guennec M [8]
  • Salome PA [7]
  • Mahamid J [6]
  • Thomas HF [6]
  • Holt LJ [6]
  • Pinglay S [6]
  • Jacobs-wagner C [6]
  • Nickelsen J [6]
  • Villa E [6]
  • Poterewicz G [6]
  • Hyman AA [5]
  • Tegunov D [4]
  • Wietrzynski W [4]
  • Kanazawa A [4]
  • Bornens M [4]
  • Kovacik L [4]
  • Merchant SS [4]
  • Strenkert D [4]
  • Kosinski J [4]
  • Aeschlimann G [4]
  • Azimzadeh J [4]
  • Beck M [4]
  • Goldie KN [4]
  • Laporte MH [4]
  • Gambarotto D [4]
  • Lee CW [3]
  • Cartwright HN [2]
  • Wingreen NS [2]
  • Martinez-sanchez A [2]
  • Kuhn Cuellar L [2]
  • Ronceray P [2]
  • Mackinder LCM [2]
  • Plitzko J [1]
  • Watanabe R [1]

Journal

  • CELL [22]
  • SCIENCE [18]
  • ELIFE [14]
  • PNAS [14]
  • NATURE [10]
  • NAT COMMUN [7]
  • NAT METHODS [6]
  • NAT PLANTS [6]
  • EMBO J [4]
  • SCI ADV [4]
  • TO BE PUBLISHED [3]
  • NAT PROTOC [1]

Software

  • IMOD [44]
  • CTFFIND [26]
  • PYTOM [25]
  • RELION [25]
  • AV3 [17]
  • TOM [17]
  • STOPGAP [12]
  • CTFPHASEFLIP [10]
  • AMIRA [1]
  • ETOMO [1]
  • IMOD, TOM, PYTOM [1]

Microscope

  • FEI TITAN KRIOS [102]
  • FEI POLARA 300 [1]

Electron Source

  • FIELD EMISSION GUN [103]

Film or detector model

  • GATAN K2 SUMMIT 4K X 4K [87]
  • GATAN K2 QUANTUM 4K X 4K [14]
  • GATAN K2 4K X 4K [1]
  • GATAN K2 BASE 4K X 4K [1]

EMPIAR Experiment type

  • EMDB [3]

EMPIAR Image category

  • MICROGRAPHS - MULTIFRAME [2]
  • TILT SERIES [2]
  • RECONSTRUCTED VOLUMES [1]
  • SUBTOMOGRAMS [1]

External links

  • PDB [103]
  • AlphaFold DB [6]
  • Gene Ontology [6]
  • InterPro [6]
  • PDBe-Kb [6]
  • Pfam [6]
  • UniProt [6]
  • ChEBI [5]
  • ChEMBL [5]
  • DrugBank [5]
  • EMDB [3]
  • EMPIAR [3]
  • SCOP2 [1]
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EMPIAR-11078
Related EMDB
EMD-15262
In situ cryo-electron tomography of the C. reinhardtii ciliary transition zone
Release date: Aug. 12, 2022
Dataset size: 302.0 GB
Experiment type: EMDB

van den Hoek H, Klena N, Jordan MA, Alvarez Viar G, Righetto RD, Schaffer M, Erdmann PS, Wan W, Geimer S, Plitzko JM, Baumeister W, Pigino G, Hamel V, Guichard P, Engel BD

Science (2022) 377 pp. 543-548 [ Pubmed: 35901159 DOI: 10.1126/science.abm6704 ]

Image sets:
  • Unaligned tilt series raw frames
  • CTF-corrected bin2 tomograms
  • Deconvoluted bin4 tomograms for visualization
  • Subtomograms at bin2
  • Aligned tilt series stacks
  • CTF-corrected bin4 tomograms
[Show more]
EMD-15252
Download Map
3D View
In situ subtomogram average of the C. reinhardtii stellate at the ciliary transition zone
CryoEM
Release date: July 27, 2022
Resolution: 28.2 Å
EM Method: Subtomogram averaging

van den Hoek H, Klena N, Jordan MA, Alvarez Viar G, Righetto RD, Schaffer M, Erdmann PS, Wan W, Geimer S, Plitzko JM, Baumeister W, Pigino G, Hamel V, Guichard P, Engel BD

Science (2022) 377 pp. 543-548 [ DOI: doi:10.1126/science.abm6704 Pubmed: 35901159 ]

EMD-15253
Download Map
3D View
In situ subtomogram average of the C. reinhardtii Y-link at the ciliary transition zone
CryoEM
Release date: July 27, 2022
Resolution: 27.9 Å
EM Method: Subtomogram averaging

van den Hoek H, Klena N, Jordan MA, Alvarez Viar G, Righetto RD, Schaffer M, Erdmann PS, Wan W, Geimer S, Plitzko JM, Baumeister W, Pigino G, Hamel V, Guichard P, Engel BD

Science (2022) 377 pp. 543-548 [ DOI: doi:10.1126/science.abm6704 Pubmed: 35901159 ]

EMD-15254
Download Map
3D View
In situ subtomogram average of the C. reinhardtii MTD sleeve at the ciliary transition zone
CryoEM
Release date: July 27, 2022
Resolution: 34.7 Å
EM Method: Subtomogram averaging

van den Hoek H, Klena N, Jordan MA, Alvarez Viar G, Righetto RD, Schaffer M, Erdmann PS, Wan W, Geimer S, Plitzko JM, Baumeister W, Pigino G, Hamel V, Guichard P, Engel BD

Science (2022) 377 pp. 543-548 [ DOI: doi:10.1126/science.abm6704 Pubmed: 35901159 ]

EMD-15255
Download Map
3D View
In situ subtomogram average of the C. reinhardtii MTD at the ciliary transition zone
CryoEM
Release date: July 27, 2022
Resolution: 34.0 Å
EM Method: Subtomogram averaging

van den Hoek H, Klena N, Jordan MA, Alvarez Viar G, Righetto RD, Schaffer M, Erdmann PS, Wan W, Geimer S, Plitzko JM, Baumeister W, Pigino G, Hamel V, Guichard P, Engel BD

Science (2022) 377 pp. 543-548 [ DOI: doi:10.1126/science.abm6704 Pubmed: 35901159 ]

EMD-15256
Download Map
3D View
Composite map of the C. reinhardtii ciliary transition zone structures attached to a single MTD from in situ subtomogram averaging
CryoEM
Release date: July 27, 2022
Resolution: 28.2 Å
EM Method: Subtomogram averaging

van den Hoek H, Klena N, Jordan MA, Alvarez Viar G, Righetto RD, Schaffer M, Erdmann PS, Wan W, Geimer S, Plitzko JM, Baumeister W, Pigino G, Hamel V, Guichard P, Engel BD

Science (2022) 377 pp. 543-548 [ DOI: doi:10.1126/science.abm6704 Pubmed: 35901159 ]

EMD-15257
Download Map
3D View
Composite map of the C. reinhardtii ciliary transition zone full 9-fold assembly from in situ subtomogram averaging
CryoEM
Release date: July 27, 2022
Resolution: 34.7 Å
EM Method: Subtomogram averaging

van den Hoek H, Klena N, Jordan MA, Alvarez Viar G, Righetto RD, Schaffer M, Erdmann PS, Wan W, Geimer S, Plitzko JM, Baumeister W, Pigino G, Hamel V, Guichard P, Engel BD

Science (2022) 377 pp. 543-548 [ DOI: doi:10.1126/science.abm6704 Pubmed: 35901159 ]

EMD-15258
Download Map
3D View
In situ subtomogram average of C. reinhardtii IFT-B at the ciliary transition zone
CryoEM
Release date: July 27, 2022
Resolution: 24.4 Å
EM Method: Subtomogram averaging

van den Hoek H, Klena N, Jordan MA, Alvarez Viar G, Righetto RD, Schaffer M, Erdmann PS, Wan W, Geimer S, Plitzko JM, Baumeister W, Pigino G, Hamel V, Guichard P, Engel BD

Science (2022) 377 pp. 543-548 [ DOI: doi:10.1126/science.abm6704 Pubmed: 35901159 ]

EMD-15259
Download Map
3D View
In situ subtomogram average of C. reinhardtii IFT-A at the ciliary transition zone
CryoEM
Release date: July 27, 2022
Resolution: 27.3 Å
EM Method: Subtomogram averaging

van den Hoek H, Klena N, Jordan MA, Alvarez Viar G, Righetto RD, Schaffer M, Erdmann PS, Wan W, Geimer S, Plitzko JM, Baumeister W, Pigino G, Hamel V, Guichard P, Engel BD

Science (2022) 377 pp. 543-548 [ DOI: doi:10.1126/science.abm6704 Pubmed: 35901159 ]

EMD-15260
Download Map
3D View
In situ subtomogram average of C. reinhardtii dynein-1b at the ciliary transition zone
CryoEM
Release date: July 27, 2022
Resolution: 29.9 Å
EM Method: Subtomogram averaging

van den Hoek H, Klena N, Jordan MA, Alvarez Viar G, Righetto RD, Schaffer M, Erdmann PS, Wan W, Geimer S, Plitzko JM, Baumeister W, Pigino G, Hamel V, Guichard P, Engel BD

Science (2022) 377 pp. 543-548 [ DOI: doi:10.1126/science.abm6704 Pubmed: 35901159 ]

Sort by: Download
Showing 1 - 10 of 106. Page 1 of 11
Display:
Statistics
×

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Preview first 10
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Filter By

Current Database

  • EMDB [103]
  • EMPIAR [3]

Current status

  • REL [106]

Sample type

  • Complex [55]
  • Cellular component [24]
  • Cell [22]
  • Protein [13]
  • Ligand [5]
  • Tissue [2]
  • Other [1]
  • Sample [1]

Organism

  • Chlamydomonas reinhardtii [54]
  • Synechocystis sp. pcc 6803 [9]
  • Homo sapiens [8]
  • Chaetomium thermophilum [7]
  • Saccharomyces cerevisiae [6]
  • Paramecium tetraurelia [6]
  • Caenorhabditis elegans [6]
  • Synechocystis sp. pcc 6803 [5]
  • Chaetomium thermophilum [2]

EM Method

  • Subtomogram averaging [71]
  • Tomography [27]
  • Single-particle [5]

Resolution

  • ≥ 3Å and < 4Å [2]
  • ≥ 4Å and < 5Å [2]
  • ≥ 5Å and < 6Å [1]
  • ≥ 8Å and < 12Å [10]
  • ≥ 12Å and < 16Å [6]
  • ≥ 16Å and < 20Å [5]
  • ≥ 20Å and < 30Å [25]
  • ≥ 30Å [26]

Model molecular weight

  • 500-1000 kDa [1]
  • 2-5 MDa [5]

Release Date

  • 2022 [13]
  • 2021 [16]
  • 2020 [13]
  • 2019 [15]
  • 2018 [20]
  • 2017 [24]
  • 2016 [4]
  • 2015 [1]

Author by name

  • Schaffer M [105]
  • Engel BD [100]
  • Plitzko JM [86]
  • Baumeister W [71]
  • Albert S [47]
  • Pfeffer S [26]
  • Wietrzynski W [23]
  • Erdmann PS [21]
  • Guichard P [21]
  • Hamel V [21]
  • Klena N [21]
  • Van Den Hoek H [21]
  • Briggs JAG [20]
  • Bykov YS [20]
  • Plitzko J [20]
  • Beck F [19]
  • Wan W [19]
  • Nickelsen J [18]
  • Rast A [18]
  • Geimer S [17]
  • Schuller JM [16]
  • Strauss M [15]
  • Beck M [14]
  • Mosalaganti S [14]
  • Alvarez Viar G [13]
  • Gries K [13]
  • Gupta TK [13]
  • Jordan MA [13]
  • Klumpe S [13]
  • Pigino G [13]
  • Righetto RD [13]
  • Rudack T [13]
  • Schroda M [13]
  • Heinz S [12]
  • Niemeyer J [12]
  • Ohnishi N [12]
  • Ostermeier M [12]
  • Sakamoto W [12]
  • Spaniol B [12]
  • Wan WN [12]
  • Van Den Hoek Hg [12]
  • Asano S [11]
  • Foerster F [11]
  • Mahamid J [11]
  • Ariotti N [10]
  • Briggs JA [10]
  • Collins BM [10]
  • Dodonova SO [10]
  • Forster F [10]
  • Kovtun O [10]
  • Leneva N [10]
  • Owen DJ [10]
  • Teasdale RD [10]
  • Thomas HF [10]
  • Cuellar LK [8]
  • Goldie KN [8]
  • Kovacik L [8]
  • Le Guennec M [8]
  • Stahlberg H [8]
  • Tassin AM [8]
  • Salome PA [7]
  • Brittingham GP [6]
  • Chung JK [6]
  • Delarue M [6]
  • Groves JT [6]
  • Gutierrez JI [6]
  • Holt LJ [6]
  • Jacobs-wagner C [6]
  • Kennedy KJ [6]
  • Kleindiek S [6]
  • Laugks T [6]
  • Pinglay S [6]
  • Poterewicz G [6]
  • Rummel A [6]
  • Sang D [6]
  • Smith AJ [6]
  • Surovtsev IV [6]
  • Villa E [6]
  • Danev R [5]
  • Hyman A [5]
  • Hyman AA [5]
  • Kuhn-cuellar L [5]
  • Aeschlimann G [4]
  • Azimzadeh J [4]
  • Borgers S [4]
  • Bornens M [4]
  • Gambarotto D [4]
  • Kanazawa A [4]
  • Kosinski J [4]
  • Laporte MH [4]
  • Lee C-W [4]
  • Merchant SS [4]
  • Sadian Y [4]
  • Salome P [4]
  • Schuller J [4]
  • Strenkert D [4]
  • Tegunov D [4]
  • Van Der Hoek H [4]
  • Dudek J [3]
  • Freeze HH [3]

Author by ORCID

  • Engel BD [93]
  • Plitzko JM [80]
  • Schaffer M [55]
  • Pfeffer S [26]
  • Hamel V [20]
  • Guichard P [20]
  • Klena N [20]
  • Bykov YS [20]
  • Van Den Hoek H [20]
  • Wan W [18]
  • Schuller JM [15]
  • Strauss M [14]
  • Geimer S [12]
  • Jordan MA [12]
  • Schroda M [12]
  • Baumeister W [12]
  • Erdmann PS [12]
  • Sakamoto W [12]
  • Heinz S [12]
  • Pigino G [12]
  • Klumpe S [12]
  • Ostermeier M [12]
  • Righetto RD [12]
  • Kovtun O [10]
  • Teasdale RD [10]
  • Leneva N [10]
  • Dodonova SO [10]
  • Mosalaganti S [10]
  • Forster F [10]
  • Collins BM [10]
  • Owen DJ [10]
  • Ariotti N [10]
  • Briggs JA [10]
  • Briggs JAG [10]
  • Stahlberg H [8]
  • Le Guennec M [8]
  • Salome PA [7]
  • Mahamid J [6]
  • Thomas HF [6]
  • Holt LJ [6]
  • Pinglay S [6]
  • Jacobs-wagner C [6]
  • Nickelsen J [6]
  • Villa E [6]
  • Poterewicz G [6]
  • Hyman AA [5]
  • Tegunov D [4]
  • Wietrzynski W [4]
  • Kanazawa A [4]
  • Bornens M [4]
  • Kovacik L [4]
  • Merchant SS [4]
  • Strenkert D [4]
  • Kosinski J [4]
  • Aeschlimann G [4]
  • Azimzadeh J [4]
  • Beck M [4]
  • Goldie KN [4]
  • Laporte MH [4]
  • Gambarotto D [4]
  • Lee CW [3]
  • Cartwright HN [2]
  • Wingreen NS [2]
  • Martinez-sanchez A [2]
  • Kuhn Cuellar L [2]
  • Ronceray P [2]
  • Mackinder LCM [2]
  • Plitzko J [1]
  • Watanabe R [1]

Journal

  • CELL [22]
  • SCIENCE [18]
  • ELIFE [14]
  • PNAS [14]
  • NATURE [10]
  • NAT COMMUN [7]
  • NAT METHODS [6]
  • NAT PLANTS [6]
  • EMBO J [4]
  • SCI ADV [4]
  • TO BE PUBLISHED [3]
  • NAT PROTOC [1]

Software

  • IMOD [44]
  • CTFFIND [26]
  • PYTOM [25]
  • RELION [25]
  • AV3 [17]
  • TOM [17]
  • STOPGAP [12]
  • CTFPHASEFLIP [10]
  • AMIRA [1]
  • ETOMO [1]
  • IMOD, TOM, PYTOM [1]

Microscope

  • FEI TITAN KRIOS [102]
  • FEI POLARA 300 [1]

Electron Source

  • FIELD EMISSION GUN [103]

Film or detector model

  • GATAN K2 SUMMIT 4K X 4K [87]
  • GATAN K2 QUANTUM 4K X 4K [14]
  • GATAN K2 4K X 4K [1]
  • GATAN K2 BASE 4K X 4K [1]

EMPIAR Experiment type

  • EMDB [3]

EMPIAR Image category

  • MICROGRAPHS - MULTIFRAME [2]
  • TILT SERIES [2]
  • RECONSTRUCTED VOLUMES [1]
  • SUBTOMOGRAMS [1]

External links

  • PDB [103]
  • AlphaFold DB [6]
  • Gene Ontology [6]
  • InterPro [6]
  • PDBe-Kb [6]
  • Pfam [6]
  • UniProt [6]
  • ChEBI [5]
  • ChEMBL [5]
  • DrugBank [5]
  • EMDB [3]
  • EMPIAR [3]
  • SCOP2 [1]