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author:"Santos A"

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Current Database

  • EMDB [5]

Current status

  • REL [5]

Sample type

  • Protein [5]
  • Complex [4]
  • DNA [4]
  • Ligand [1]
  • Virus [1]

Organism

  • Enterobacteria phage t4 [4]
  • Synthetic construct [4]
  • 1497848 [1]
  • Carica papaya [1]

EM Method

  • Single-particle [5]

Resolution

  • ≥ 2Å and < 3Å [1]
  • ≥ 3Å and < 4Å [4]

Model molecular weight

  • 100-250 kDa [1]
  • 250-500 kDa [3]
  • > 10 MDa [1]

Release Date

  • 2026 [1]
  • 2025 [4]

Author by name

  • Benkovic SJ [4]
  • Feng X [4]
  • Li H [4]
  • Ruda De Luna Santos A [4]
  • Spiering MM [4]
  • Abreu E [1]
  • Almeida F [1]
  • Amorim G [1]
  • Arruda H [1]
  • Cunha M [1]
  • Fernandes A [1]
  • Fernandes P [1]
  • Maurastoni M [1]
  • Montovaneli G [1]
  • Ribeiro S [1]
  • Rios V [1]
  • Rodrigues S [1]
  • Sanches M [1]
  • Santos A [1]
  • Silva J [1]
  • Ventura J [1]
  • Zingali R [1]
  • De Oliveira G [1]

Author by ORCID

  • Li H [4]
  • Silva J [1]
  • De Oliveira G [1]
  • Rodrigues S [1]
  • Fernandes P [1]

Journal

  • NUCLEIC ACIDS RES [4]
  • TO BE PUBLISHED [1]

Software

  • CRYOSPARC [5]

Microscope

  • TFS KRIOS [5]

Electron Source

  • FIELD EMISSION GUN [5]

Film or detector model

  • GATAN K3 6K X 4K [4]
  • FEI FALCON IV 4K X 4K [1]

External links

  • AlphaFold DB [5]
  • PDB [5]
  • UniProt [5]
  • Gene Ontology [4]
  • PDBe-Kb [4]
  • Pfam [4]
  • ChEBI [1]
  • ChEMBL [1]
  • DrugBank [1]
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EMD-76875
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CryoEM structure of Papaya Meleira Virus PMeV particles purified directly from Carica papaya latex
CryoEM
Release date: May 6, 2026
Resolution: 2.6 Å
EM Method: Single-particle
Fitted PDBs: 12ze
Q-score: 0.604

de Oliveira G, Montovaneli G, Arruda H, Rios V, Cunha M, Maurastoni M, Amorim G, Abreu E, Ribeiro S, Sanches M, Zingali R, Almeida F, Santos A, Fernandes A, Ventura J, Silva J, Fernandes P, Rodrigues S

To Be Published

EMD-47531
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T4 bacteriophage replicative holoenzyme, DNA in right Polymerase State 1
CryoEM
Release date: Nov. 19, 2025
Resolution: 3.57 Å
EM Method: Single-particle
Fitted PDBs: 9e5y
Q-score: 0.383

Feng X, Spiering MM, Ruda de Luna Santos A, Benkovic SJ, Li H

Nucleic Acids Res (2025) 53 [ DOI: doi:10.1093/nar/gkaf1359 Pubmed: 41459747 ]

EMD-47824
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T4 bacteriophage replicative holoenzyme, DNA in left Polymerase State 2
CryoEM
Release date: Nov. 19, 2025
Resolution: 3.7 Å
EM Method: Single-particle
Fitted PDBs: 9ea2
Q-score: 0.326

Feng X, Spiering MM, Ruda de Luna Santos A, Benkovic SJ, Li H

Nucleic Acids Res (2025) 53 [ DOI: doi:10.1093/nar/gkaf1359 Pubmed: 41459747 ]

EMD-47825
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T4 bacteriophage replicative holoenzyme with triple mutants D75R, Q430E, and K432E on exo- Polymerase
CryoEM
Release date: Nov. 19, 2025
Resolution: 3.99 Å
EM Method: Single-particle
Fitted PDBs: 9ea3
Q-score: 0.333

Feng X, Spiering MM, Ruda de Luna Santos A, Benkovic SJ, Li H

Nucleic Acids Res (2025) 53 [ DOI: doi:10.1093/nar/gkaf1359 Pubmed: 41459747 ]

EMD-47826
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3D View
T4 bacteriophage replicative holoenzyme, DNA in left Polymerase State 3
CryoEM
Release date: Nov. 19, 2025
Resolution: 3.74 Å
EM Method: Single-particle
Fitted PDBs: 9ea6
Q-score: 0.349

Feng X, Spiering MM, Ruda de Luna Santos A, Benkovic SJ, Li H

Nucleic Acids Res (2025) 53 [ DOI: doi:10.1093/nar/gkaf1359 Pubmed: 41459747 ]

Sort by: Download
Showing 1 - 5 of 5. Page 1 of 1
Display:
Statistics
×

Download











































Preview first 10
Download

Filter By

Current Database

  • EMDB [5]

Current status

  • REL [5]

Sample type

  • Protein [5]
  • Complex [4]
  • DNA [4]
  • Ligand [1]
  • Virus [1]

Organism

  • Enterobacteria phage t4 [4]
  • Synthetic construct [4]
  • 1497848 [1]
  • Carica papaya [1]

EM Method

  • Single-particle [5]

Resolution

  • ≥ 2Å and < 3Å [1]
  • ≥ 3Å and < 4Å [4]

Model molecular weight

  • 100-250 kDa [1]
  • 250-500 kDa [3]
  • > 10 MDa [1]

Release Date

  • 2026 [1]
  • 2025 [4]

Author by name

  • Benkovic SJ [4]
  • Feng X [4]
  • Li H [4]
  • Ruda De Luna Santos A [4]
  • Spiering MM [4]
  • Abreu E [1]
  • Almeida F [1]
  • Amorim G [1]
  • Arruda H [1]
  • Cunha M [1]
  • Fernandes A [1]
  • Fernandes P [1]
  • Maurastoni M [1]
  • Montovaneli G [1]
  • Ribeiro S [1]
  • Rios V [1]
  • Rodrigues S [1]
  • Sanches M [1]
  • Santos A [1]
  • Silva J [1]
  • Ventura J [1]
  • Zingali R [1]
  • De Oliveira G [1]

Author by ORCID

  • Li H [4]
  • Silva J [1]
  • De Oliveira G [1]
  • Rodrigues S [1]
  • Fernandes P [1]

Journal

  • NUCLEIC ACIDS RES [4]
  • TO BE PUBLISHED [1]

Software

  • CRYOSPARC [5]

Microscope

  • TFS KRIOS [5]

Electron Source

  • FIELD EMISSION GUN [5]

Film or detector model

  • GATAN K3 6K X 4K [4]
  • FEI FALCON IV 4K X 4K [1]

External links

  • AlphaFold DB [5]
  • PDB [5]
  • UniProt [5]
  • Gene Ontology [4]
  • PDBe-Kb [4]
  • Pfam [4]
  • ChEBI [1]
  • ChEMBL [1]
  • DrugBank [1]