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author:"Safdari HA"

Filter By

Current Database

  • EMDB [28]
  • EMPIAR [2]

Current status

  • REL [30]

Sample type

  • Complex [28]
  • Protein [18]
  • RNA [18]
  • Ligand [16]

Organism

  • Escherichia coli [11]
  • Escherichia coli [8]
  • Escherichia coli [4]
  • Bacillus subtilis [3]
  • Clostridioides difficile [3]
  • Drosophila melanogaster [3]
  • Escherichia coli [3]
  • Streptomyces rimosus [2]
  • (no species) [2]
  • Drosophila albomicans [1]
  • Homo sapiens [1]

EM Method

  • Single-particle [28]

Resolution

  • ≥ 2Å and < 3Å [22]
  • ≥ 3Å and < 4Å [5]
  • ≥ 20Å and < 30Å [1]

Model molecular weight

  • 500-1000 kDa [4]
  • 1-2 MDa [4]
  • 2-5 MDa [10]

Release Date

  • 2026 [15]
  • 2025 [6]
  • 2024 [3]
  • 2023 [4]
  • 2022 [1]
  • 2018 [1]

Author by name

  • Safdari HA [29]
  • Wilson DN [28]
  • Morici M [20]
  • Paternoga H [15]
  • Klepacki D [10]
  • Vazquez-laslop N [10]
  • Berger M [8]
  • Dallape A [8]
  • Milon P [8]
  • Sanchez-castro A [8]
  • Berger MJ [6]
  • Ejim L [6]
  • Fabbretti A [6]
  • Giuliodori AM [6]
  • Guitor AK [6]
  • Mankin AS [6]
  • Travin D [6]
  • Wang W [6]
  • Wright G [6]
  • Xu M [6]
  • Bock LV [5]
  • Chiba S [5]
  • Fujiwara K [5]
  • Gersteuer F [5]
  • Av-gay Y [4]
  • Baliga C [4]
  • Beckert B [4]
  • Cook MA [4]
  • Corazza M [4]
  • Dhar N [4]
  • Fitzgerald M [4]
  • Golas AJ [4]
  • Huang W [4]
  • Hung DT [4]
  • Koller TO [4]
  • Lin S [4]
  • Mankin A [4]
  • Nietupski RM [4]
  • Rao VN [4]
  • Sahile H [4]
  • Schaenzer AJ [4]
  • Wang L [4]
  • Yarlagadda V [4]
  • Berendes O [3]
  • Grubmuller H [3]
  • Kaur KJ [3]
  • Lele DS [3]
  • Obana N [3]
  • Takada H [3]
  • Yoshida M [3]
  • Chen X [2]
  • Chou S [2]
  • Cook M [2]
  • Coombes BK [2]
  • Fiebig A [2]
  • Gabrielli S [2]
  • Jangra M [2]
  • Kaur M [2]
  • Konevega AL [2]
  • Koteva K [2]
  • Macneil L [2]
  • Nakamoto JA [2]
  • Paleskava A [2]
  • Penaranda K [2]
  • Travin DY [2]
  • Vinogradova DS [2]
  • Wright GD [2]
  • Yousefi Y [2]
  • Aggarwal H [1]
  • Chandele A [1]
  • Chawla H [1]
  • Dutta S [1]
  • Gersteuer FG [1]
  • Ignatova Z [1]
  • Kasvandik S [1]
  • Kumar Kabra S [1]
  • Kumar S [1]
  • Lodha R [1]
  • Luthra K [1]
  • Makhdoomi MA [1]
  • Mishra N [1]
  • Morici MM [1]
  • Panda H [1]
  • Polte C [1]
  • Reddy ES [1]
  • Tenson T [1]
  • Wilson DNW [1]

Author by ORCID

  • Safdari HA [25]
  • Wilson DN [25]
  • Morici M [17]
  • Paternoga H [15]
  • Milon P [8]
  • Sanchez-castro A [8]
  • Berger M [7]
  • Fabbretti A [6]
  • Berger MJ [6]
  • Dallape A [6]
  • Fujiwara K [5]
  • Chiba S [5]
  • Bock LV [5]
  • Gersteuer F [5]
  • Cook MA [4]
  • Baliga C [4]
  • Mankin AS [4]
  • Huang W [4]
  • Vazquez-laslop N [4]
  • Corazza M [4]
  • Obana N [3]
  • Koller TO [3]
  • Berendes O [3]
  • Guitor AK [2]
  • Nakamoto JA [2]
  • Macneil L [2]
  • Morici M [2]
  • Gabrielli S [2]
  • Wilson DN [2]
  • Penaranda K [2]
  • Koteva K [2]
  • Xu M [2]
  • Ejim L [2]
  • Travin DY [2]
  • Mankin AS [2]
  • Jangra M [2]
  • Klepacki D [2]
  • Yousefi Y [2]
  • Safdari HA [1]
  • Luthra K [1]
  • Reddy ES [1]
  • Mishra N [1]
  • Ignatova Z [1]
  • Kasvandik S [1]
  • Chawla H [1]

Journal

  • NAT COMMUN [16]
  • TO BE PUBLISHED [6]
  • NAT CHEM BIOL [4]
  • NATURE [2]
  • RES SQ [2]
  • J VIROL [1]
  • NAT CELL BIOL [1]
  • NUCLEIC ACIDS RES [1]

Software

  • RELION [13]
  • CTFFIND [2]

Microscope

  • TFS KRIOS [21]
  • FEI TITAN KRIOS [6]
  • FEI TECNAI 12 [1]

Electron Source

  • FIELD EMISSION GUN [27]
  • LAB6 [1]

Film or detector model

  • GATAN K3 BIOQUANTUM 6K X 4K [15]
  • GATAN K3 6K X 4K [7]
  • FEI FALCON IV 4K X 4K [3]
  • GATAN K3 BIOCONTINUUM 6K X 4K [2]
  • OTHER [1]

EMPIAR Experiment type

  • EMDB [2]

EMPIAR Image category

  • MICROGRAPHS - MULTIFRAME [2]

External links

  • AlphaFold DB [18]
  • Gene Ontology [18]
  • PDB [18]
  • PDBe-Kb [18]
  • Pfam [18]
  • UniProt [18]
  • InterPro [17]
  • ChEBI [16]
  • ChEMBL [16]
  • DrugBank [16]
  • Complex Portal [9]
  • EMPIAR [5]
  • EMDB [2]
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Showing 1 - 10 of 30. Page 1 of 3
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EMD-53124
Download Map
3D View
Cryo-EM map 3D Refined of the initiator P-tRNA bound to the N-terminus of Initiation Factor 3 IF3 in the context of the bacterial preinitiation complex PIC
CryoEM
Release date: Sept. 30, 2026
Resolution: 3.25 Å
EM Method: Single-particle

Sanchez-Castro A, Penaranda K, Dallape A, Safdari HA, Nakamoto JA, Morici M, Vinogradova DS, Paleskava A, Wilson DN, Konevega AL, Milon P

To Be Published

EMD-53125
Download Map
3D View
Cryo-EM map 3D Refined of the aptamer 343 bound to the N-terminus of Initiation Factor 3 IF3 in the context of the bacterial preinitiation complex PIC
CryoEM
Release date: Sept. 30, 2026
Resolution: 3.15 Å
EM Method: Single-particle

Sanchez-Castro A, Penaranda K, Dallape A, Safdari HA, Nakamoto JA, Morici M, Vinogradova DS, Paleskava A, Wilson DN, Konevega AL, Milon P

To Be Published

EMD-56520
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3D View
Cryo-EM map of SKM-70S complex State 2 Accommodating A-tRNA
CryoEM
Release date: Sept. 2, 2026
Resolution: 2.3 Å
EM Method: Single-particle

Cook MA, Xu M, Wang W, Rao VN, Schaenzer AJ, Wang L, Yarlagadda V, Guitor AK, Ejim L, Wright G, Golas AJ, Nietupski RM, Fitzgerald M, Hung DT, Sahile H, Av-Gay Y, Lin S, Dhar N, Travin D, Klepacki D, Vazquez-Laslop N, Mankin A, Morici M, Corazza M, Safdari HA, Berger M, Wilson DN

To Be Published

EMD-56525
Download Map
3D View
Cryo-EM map of SKM-70S complex State 4 Accommodated A-tRNA
CryoEM
Release date: Sept. 2, 2026
Resolution: 2.3 Å
EM Method: Single-particle

Cook MA, Xu M, Wang W, Rao VN, Schaenzer AJ, Wang L, Yarlagadda V, Guitor AK, Ejim L, Wright G, Golas AJ, Nietupski RM, Fitzgerald M, Hung DT, Sahile H, Av-Gay Y, Lin S, Dhar N, Travin D, Klepacki D, Vazquez-Laslop N, Mankin A, Morici M, Corazza M, Safdari HA, Berger M, Wilson DN

To Be Published

EMD-56530
Download Map
3D View
Cryo-EM map of SKM-70S complex State 6 Empty, canonical
CryoEM
Release date: Sept. 2, 2026
Resolution: 2.75 Å
EM Method: Single-particle

Cook MA, Xu M, Wang W, Rao VN, Schaenzer AJ, Wang L, Yarlagadda V, Guitor AK, Ejim L, Wright G, Golas AJ, Nietupski RM, Fitzgerald M, Hung DT, Sahile H, Av-Gay Y, Lin S, Dhar N, Travin D, Klepacki D, Vazquez-Laslop N, Mankin A, Morici M, Corazza M, Safdari HA, Berger M, Wilson DN

To Be Published

EMD-57122
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3D View
Cryo-EM map of SKM-70S complex State 7 Empty, rotated
CryoEM
Release date: Sept. 2, 2026
Resolution: 3.42 Å
EM Method: Single-particle

Cook MA, Xu M, Wang W, Rao VN, Schaenzer AJ, Wang L, Yarlagadda V, Guitor AK, Ejim L, Wright G, Golas AJ, Nietupski RM, Fitzgerald M, Hung DT, Sahile H, Av-Gay Y, Lin S, Dhar N, Travin D, Klepacki D, Vazquez-Laslop N, Mankin A, Morici M, Corazza M, Safdari HA, Berger M, Wilson DN

To Be Published

EMD-55847
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3D View
DalDro bound to the terminating Escherichia coli 70S ribosome
CryoEM
Release date: July 22, 2026
Resolution: 3.11 Å
EM Method: Single-particle
Fitted PDBs: 9tey
Q-score: 0.505
Similar entry percentile: 62%

Huang W, Berger MJ, Safdari HA, Klepacki D, Paternoga H, Baliga C, Wilson DN, Vazquez-Laslop N, Mankin AS

Nat Commun (2026) 17 [ DOI: doi:10.1038/s41467-026-74007-x Pubmed: 42236475 ]

EMD-53943
Download Map
3D View
Manikomycin bound to the Escherichia coli 50S ribosomal subunit
CryoEM
Release date: May 27, 2026
Resolution: 2.4 Å
EM Method: Single-particle
Fitted PDBs: 9rfw
Q-score: 0.561
Similar entry percentile: 49%

Kaur M, Travin DY, Berger MJ, Jangra M, Morici M, Safdari HA, Klepacki D, Wang W, Cook M, Chou S, Guitor AK, Koteva K, Xu M, Ejim L, Fiebig A, Yousefi Y, Coombes BK, Macneil L, Vazquez-Laslop N, Mankin AS, Wilson DN, Wright GD

Nature (2026) 655 pp. 737-746 [ Pubmed: 42236948 DOI: doi:10.1038/s41586-026-10589-2 ]

EMD-54009
Download Map
3D View
Manikomycin bound to the Escherichia coli 70S ribosome
CryoEM
Release date: May 27, 2026
Resolution: 2.45 Å
EM Method: Single-particle
Fitted PDBs: 9rja
Q-score: 0.484
Similar entry percentile: 18%

Kaur M, Travin DY, Berger MJ, Jangra M, Morici M, Safdari HA, Klepacki D, Wang W, Cook M, Chou S, Guitor AK, Koteva K, Xu M, Ejim L, Fiebig A, Yousefi Y, Coombes BK, Macneil L, Vazquez-Laslop N, Mankin AS, Wilson DN, Wright GD

Nature (2026) 655 pp. 737-746 [ Pubmed: 42236948 DOI: doi:10.1038/s41586-026-10589-2 ]

EMD-55844
Download Map
3D View
DalDro bound to the initiating Escherichia coli 70S ribosome
CryoEM
Release date: May 13, 2026
Resolution: 2.9 Å
EM Method: Single-particle
Fitted PDBs: 9tew
Q-score: 0.55
Similar entry percentile: 75%

Huang W, Berger MJ, Safdari HA, Klepacki D, Paternoga H, Baliga C, Wilson DN, Vazquez-Laslop N, Mankin AS

Nat Commun (2026) 17 [ DOI: doi:10.1038/s41467-026-74007-x Pubmed: 42236475 ]

Sort by: Download
Showing 1 - 10 of 30. Page 1 of 3
Display:
Statistics
×

Download



Preview 10 entries View All Download file

Filter By

Current Database

  • EMDB [28]
  • EMPIAR [2]

Current status

  • REL [30]

Sample type

  • Complex [28]
  • Protein [18]
  • RNA [18]
  • Ligand [16]

Organism

  • Escherichia coli [11]
  • Escherichia coli [8]
  • Escherichia coli [4]
  • Bacillus subtilis [3]
  • Clostridioides difficile [3]
  • Drosophila melanogaster [3]
  • Escherichia coli [3]
  • Streptomyces rimosus [2]
  • (no species) [2]
  • Drosophila albomicans [1]
  • Homo sapiens [1]

EM Method

  • Single-particle [28]

Resolution

  • ≥ 2Å and < 3Å [22]
  • ≥ 3Å and < 4Å [5]
  • ≥ 20Å and < 30Å [1]

Model molecular weight

  • 500-1000 kDa [4]
  • 1-2 MDa [4]
  • 2-5 MDa [10]

Release Date

  • 2026 [15]
  • 2025 [6]
  • 2024 [3]
  • 2023 [4]
  • 2022 [1]
  • 2018 [1]

Author by name

  • Safdari HA [29]
  • Wilson DN [28]
  • Morici M [20]
  • Paternoga H [15]
  • Klepacki D [10]
  • Vazquez-laslop N [10]
  • Berger M [8]
  • Dallape A [8]
  • Milon P [8]
  • Sanchez-castro A [8]
  • Berger MJ [6]
  • Ejim L [6]
  • Fabbretti A [6]
  • Giuliodori AM [6]
  • Guitor AK [6]
  • Mankin AS [6]
  • Travin D [6]
  • Wang W [6]
  • Wright G [6]
  • Xu M [6]
  • Bock LV [5]
  • Chiba S [5]
  • Fujiwara K [5]
  • Gersteuer F [5]
  • Av-gay Y [4]
  • Baliga C [4]
  • Beckert B [4]
  • Cook MA [4]
  • Corazza M [4]
  • Dhar N [4]
  • Fitzgerald M [4]
  • Golas AJ [4]
  • Huang W [4]
  • Hung DT [4]
  • Koller TO [4]
  • Lin S [4]
  • Mankin A [4]
  • Nietupski RM [4]
  • Rao VN [4]
  • Sahile H [4]
  • Schaenzer AJ [4]
  • Wang L [4]
  • Yarlagadda V [4]
  • Berendes O [3]
  • Grubmuller H [3]
  • Kaur KJ [3]
  • Lele DS [3]
  • Obana N [3]
  • Takada H [3]
  • Yoshida M [3]
  • Chen X [2]
  • Chou S [2]
  • Cook M [2]
  • Coombes BK [2]
  • Fiebig A [2]
  • Gabrielli S [2]
  • Jangra M [2]
  • Kaur M [2]
  • Konevega AL [2]
  • Koteva K [2]
  • Macneil L [2]
  • Nakamoto JA [2]
  • Paleskava A [2]
  • Penaranda K [2]
  • Travin DY [2]
  • Vinogradova DS [2]
  • Wright GD [2]
  • Yousefi Y [2]
  • Aggarwal H [1]
  • Chandele A [1]
  • Chawla H [1]
  • Dutta S [1]
  • Gersteuer FG [1]
  • Ignatova Z [1]
  • Kasvandik S [1]
  • Kumar Kabra S [1]
  • Kumar S [1]
  • Lodha R [1]
  • Luthra K [1]
  • Makhdoomi MA [1]
  • Mishra N [1]
  • Morici MM [1]
  • Panda H [1]
  • Polte C [1]
  • Reddy ES [1]
  • Tenson T [1]
  • Wilson DNW [1]

Author by ORCID

  • Safdari HA [25]
  • Wilson DN [25]
  • Morici M [17]
  • Paternoga H [15]
  • Milon P [8]
  • Sanchez-castro A [8]
  • Berger M [7]
  • Fabbretti A [6]
  • Berger MJ [6]
  • Dallape A [6]
  • Fujiwara K [5]
  • Chiba S [5]
  • Bock LV [5]
  • Gersteuer F [5]
  • Cook MA [4]
  • Baliga C [4]
  • Mankin AS [4]
  • Huang W [4]
  • Vazquez-laslop N [4]
  • Corazza M [4]
  • Obana N [3]
  • Koller TO [3]
  • Berendes O [3]
  • Guitor AK [2]
  • Nakamoto JA [2]
  • Macneil L [2]
  • Morici M [2]
  • Gabrielli S [2]
  • Wilson DN [2]
  • Penaranda K [2]
  • Koteva K [2]
  • Xu M [2]
  • Ejim L [2]
  • Travin DY [2]
  • Mankin AS [2]
  • Jangra M [2]
  • Klepacki D [2]
  • Yousefi Y [2]
  • Safdari HA [1]
  • Luthra K [1]
  • Reddy ES [1]
  • Mishra N [1]
  • Ignatova Z [1]
  • Kasvandik S [1]
  • Chawla H [1]

Journal

  • NAT COMMUN [16]
  • TO BE PUBLISHED [6]
  • NAT CHEM BIOL [4]
  • NATURE [2]
  • RES SQ [2]
  • J VIROL [1]
  • NAT CELL BIOL [1]
  • NUCLEIC ACIDS RES [1]

Software

  • RELION [13]
  • CTFFIND [2]

Microscope

  • TFS KRIOS [21]
  • FEI TITAN KRIOS [6]
  • FEI TECNAI 12 [1]

Electron Source

  • FIELD EMISSION GUN [27]
  • LAB6 [1]

Film or detector model

  • GATAN K3 BIOQUANTUM 6K X 4K [15]
  • GATAN K3 6K X 4K [7]
  • FEI FALCON IV 4K X 4K [3]
  • GATAN K3 BIOCONTINUUM 6K X 4K [2]
  • OTHER [1]

EMPIAR Experiment type

  • EMDB [2]

EMPIAR Image category

  • MICROGRAPHS - MULTIFRAME [2]

External links

  • AlphaFold DB [18]
  • Gene Ontology [18]
  • PDB [18]
  • PDBe-Kb [18]
  • Pfam [18]
  • UniProt [18]
  • InterPro [17]
  • ChEBI [16]
  • ChEMBL [16]
  • DrugBank [16]
  • Complex Portal [9]
  • EMPIAR [5]
  • EMDB [2]