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author:"Rubio V"

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Current Database

  • EMDB [9]
  • EMPIAR [1]

Current status

  • REL [10]

Sample type

  • Complex [9]
  • Protein [9]
  • Ligand [5]

Organism

  • Severe acute respiratory syndrome coronavirus [5]
  • Severe acute respiratory syndrome coronavirus [3]
  • Enterobacteria phage t4 [2]
  • Arabidopsis thaliana [1]

EM Method

  • Single-particle [9]

Resolution

  • ≥ 3Å and < 4Å [3]
  • ≥ 4Å and < 5Å [2]
  • ≥ 6Å and < 8Å [3]
  • ≥ 8Å and < 12Å [1]

Model molecular weight

  • 250-500 kDa [5]

Release Date

  • 2026 [1]
  • 2025 [1]
  • 2023 [2]
  • 2022 [6]

Author by name

  • Rubio V [10]
  • Forcada-nadal A [9]
  • Geller R [9]
  • Marina A [9]
  • Bravo J [8]
  • Gougeard N [8]
  • Llacer JL [8]
  • Lopez-redondo ML [8]
  • Melero R [8]
  • Marco-marin C [7]
  • Arranz R [6]
  • Carazo JM [6]
  • Comas I [6]
  • Coscolla M [6]
  • Gil C [6]
  • Ginex T [6]
  • Gozalbo-rovira R [6]
  • Krieger J [6]
  • Mata CP [6]
  • Orozco M [6]
  • Ruiz-rodriguez P [6]
  • Sanz-frasquet C [6]
  • Zamora-caballero S [6]
  • Frances-gomez C [5]
  • Martinez M [5]
  • Sanchez-sorzano CO [5]
  • Wieczor M [5]
  • Adhav A [3]
  • Marti-mari O [3]
  • Perez-perez MJ [3]
  • San-felix A [3]
  • Espinosa C [2]
  • Frances C [2]
  • Gargantilla M [2]
  • Hernandez-sierra MDP [2]
  • Martinez-gualda B [2]
  • Rubio-del-campo A [2]
  • Ruiz-partida R [2]
  • Villamayor-belinchon L [2]
  • Alabadi D [1]
  • Aviles-alia AI [1]
  • Blazquez AB [1]
  • Boskovic J [1]
  • Esteban A [1]
  • Fonseca S [1]
  • Francés-gómez C [1]
  • Gago F [1]
  • Jimenez De Oya N [1]
  • Llorca O [1]
  • Llácer JL [1]
  • Lopez ML [1]
  • Lopez-perrote A [1]
  • López-redondo ML [1]
  • Marco-marín C [1]
  • Martin-acebes MA [1]
  • Martínez M [1]
  • Moreno-simoni M [1]
  • Palacios-abella A [1]
  • Rusu L [1]
  • Sánchez-sorzano CÓ [1]
  • Urbez C [1]
  • Wieczór M [1]

Author by ORCID

  • Marina A [8]
  • Bravo J [7]
  • Carazo JM [5]
  • Arranz R [5]
  • Gil C [5]
  • Melero R [5]
  • Coscolla M [5]
  • Ginex T [5]
  • Comas I [5]
  • Martinez M [5]
  • Ruiz-rodriguez P [5]
  • Orozco M [5]
  • Mata CP [5]
  • Gozalbo-rovira R [5]
  • Zamora-caballero S [5]
  • Wieczor M [5]
  • Llacer JL [3]
  • Forcada-nadal A [3]
  • Perez-perez MJ [3]
  • San-felix A [3]
  • Gougeard N [2]
  • Frances C [2]
  • Ruiz-partida R [2]
  • Gargantilla M [2]
  • Adhav A [2]
  • Geller R [2]
  • Villamayor-belinchon L [2]
  • Rubio-del-campo A [2]
  • Marti-mari O [2]
  • Hernandez-sierra MDP [2]
  • Espinosa C [2]
  • Blazquez AB [1]
  • Gago F [1]

Journal

  • PLOS PATHOG [6]
  • J MED CHEM [2]
  • ACS OMEGA [1]
  • STRUCTURE [1]

Software

  • CRYOSPARC [6]
  • RELION [6]
  • SCIPION [6]

Microscope

  • FEI TALOS ARCTICA [7]
  • FEI TITAN KRIOS [1]
  • TFS GLACIOS [1]

Electron Source

  • FIELD EMISSION GUN [9]

Film or detector model

  • FEI FALCON III 4K X 4K [7]
  • FEI FALCON IV 4K X 4K [2]

EMPIAR Experiment type

  • EMDB [1]

EMPIAR Image category

  • MICROGRAPHS - SINGLE FRAME [1]

External links

  • PDB [9]
  • PDBe-Kb [9]
  • UniProt [9]
  • Complex Portal [6]
  • ChEBI [5]
  • ChEMBL [5]
  • AlphaFold DB [4]
  • Gene Ontology [3]
  • InterPro [3]
  • Pfam [3]
  • DrugBank [2]
  • EMDB [1]
  • EMPIAR [1]
Sort by: Download
Showing 1 - 10 of 10. Page 1 of 1
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EMD-54176
Download Map
3D View
CryoEM structure of the spike S protein trimer of the omicron BA.1 variant prepared in the presence of compound II-Na salt
CryoEM
Release date: May 6, 2026
Resolution: 6.25 Å
EM Method: Single-particle

Marti-Mari O, Moreno-Simoni M, Aviles-Alia AI, Rusu L, Forcada-Nadal A, Adhav A, Lopez-Redondo ML, Blazquez AB, Esteban A, Jimenez de Oya N, Marina A, Rubio V, Llacer JL, Gago F, Martin-Acebes MA, Perez-Perez MJ, Geller R, San-Felix A

Acs Omega (2025) 10 pp. 56830-56844 [ Pubmed: 41322621 DOI: doi:10.1021/acsomega.5c10442 ]

EMD-19894
Download Map
3D View
Arabidopsis thaliana R2T complex
CryoEM
Release date: Jan. 29, 2025
Resolution: 3.68 Å
EM Method: Single-particle
Fitted PDBs: 9eq2
Q-score: 0.388

Palacios-Abella A, Lopez-Perrote A, Boskovic J, Fonseca S, Urbez C, Rubio V, Llorca O, Alabadi D

Structure (2025) 33 pp. 740- [ Pubmed: 40015274 DOI: doi:10.1016/j.str.2025.01.023 ]

EMD-17576
Download Map
3D View
SARS-CoV-2 S-protein:D614G mutant in 1-up conformation
CryoEM
Release date: Sept. 27, 2023
Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 8p99
Q-score: 0.343

Gargantilla M, Frances C, Adhav A, Forcada-Nadal A, Martinez-Gualda B, Marti-Mari O, Lopez-Redondo ML, Melero R, Marco-Marin C, Gougeard N, Espinosa C, Rubio-Del-Campo A, Ruiz-Partida R, Hernandez-Sierra MDP, Villamayor-Belinchon L, Bravo J, Llacer JL, Marina A, Rubio V, San-Felix A, Geller R, Perez-Perez MJ

J Med Chem (2023) 66 pp. 10432-10457 [ Pubmed: 37471688 DOI: doi:10.1021/acs.jmedchem.3c00576 ]

EMD-17578
Download Map
3D View
SARS-CoV-2 S protein S:D614G mutant in 3-down with binding site of an entry inhibitor
CryoEM
Release date: Sept. 27, 2023
Resolution: 4.3 Å
EM Method: Single-particle
Fitted PDBs: 8p9y
Q-score: 0.117

Gargantilla M, Frances C, Adhav A, Forcada-Nadal A, Martinez-Gualda B, Marti-Mari O, Lopez-Redondo ML, Melero R, Marco-Marin C, Gougeard N, Espinosa C, Rubio-Del-Campo A, Ruiz-Partida R, Hernandez-Sierra MDP, Villamayor-Belinchon L, Bravo J, Llacer JL, Marina A, Rubio V, San-Felix A, Geller R, Perez-Perez MJ

J Med Chem (2023) 66 pp. 10432-10457 [ Pubmed: 37471688 DOI: doi:10.1021/acs.jmedchem.3c00576 ]

EMPIAR-10891
Related EMDB
EMD-13916
SARS-CoV-2 spike protein S:D614G + S:A222V variant
Release date: May 25, 2022
Dataset size: 303.8 GB
Experiment type: EMDB

Ginex T, Marco-Marín C, Wieczór M, Mata CP, Krieger J, Ruiz-Rodriguez P, López-Redondo ML, Francés-Gómez C, Melero R, Sánchez-Sorzano CÓ, Martínez M, Gougeard N, Forcada-Nadal A, Zamora-Caballero S, Gozalbo-Rovira R, Sanz-Frasquet C, Arranz R, Bravo J, Rubio V, Marina A, Geller R, Comas I, Gil C, Coscolla M, Orozco M, Llácer JL, Carazo JM

PLoS Pathog (2022) 18 [ Pubmed: 35816514 DOI: 10.1371/journal.ppat.1010631 ]

Image sets:
  • 2.outputMicrographs
EMD-13916
Download Map
3D View
Raw data
EMPIAR-10891
SARS-CoV-2 S protein S:A222V S:D614G mutant 1-up
CryoEM
Release date: May 25, 2022
Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 7qdg
Q-score: 0.31

Ginex T, Marco-Marin C, Wieczor M, Mata CP, Krieger J, Ruiz-Rodriguez P, Lopez-Redondo ML, Frances-Gomez C, Melero R, Sanchez-Sorzano CO, Martinez M, Gougeard N, Forcada-Nadal A, Zamora-Caballero S, Gozalbo-Rovira R, Sanz-Frasquet C, Arranz R, Bravo J, Rubio V, Marina A, Geller R, Comas I, Gil C, Coscolla M, Orozco M, Llacer JL, Carazo JM

PLoS Pathog (2022) 18 pp. e1010631-e1010631 [ DOI: doi:10.1371/journal.ppat.1010631 Pubmed: 35816514 ]

EMD-13917
Download Map
3D View
SARS-CoV-2 S protein S:A222V S:D614G mutant 2-up
CryoEM
Release date: May 25, 2022
Resolution: 6.8 Å
EM Method: Single-particle

Ginex T, Marco-Marin C, Wieczor M, Mata CP, Krieger J, Ruiz-Rodriguez P, Lopez-Redondo ML, Frances-Gomez C, Melero R, Sanchez-Sorzano CO, Martinez M, Gougeard N, Forcada-Nadal A, Zamora-Caballero S, Gozalbo-Rovira R, Sanz-Frasquet C, Arranz R, Bravo J, Rubio V, Marina A, Geller R, Comas I, Gil C, Coscolla M, Orozco M, Llacer JL, Carazo JM

PLoS Pathog (2022) 18 pp. e1010631-e1010631 [ DOI: doi:10.1371/journal.ppat.1010631 Pubmed: 35816514 ]

EMD-13918
Download Map
3D View
SARS-CoV-2 S protein S:A222V S:D614G mutant 3-down
CryoEM
Release date: May 25, 2022
Resolution: 7.0 Å
EM Method: Single-particle

Ginex T, Marco-Marin C, Wieczor M, Mata CP, Krieger J, Ruiz-Rodriguez P, Lopez-Redondo ML, Frances-Gomez C, Melero R, Sanchez-Sorzano CO, Martinez M, Gougeard N, Forcada-Nadal A, Zamora-Caballero S, Gozalbo-Rovira R, Sanz-Frasquet C, Arranz R, Bravo J, Rubio V, Marina A, Geller R, Comas I, Gil C, Coscolla M, Orozco M, Llacer JL, Carazo JM

PLoS Pathog (2022) 18 pp. e1010631-e1010631 [ DOI: doi:10.1371/journal.ppat.1010631 Pubmed: 35816514 ]

EMD-13919
Download Map
3D View
SARS-CoV-2 S protein S:D614G mutant 1-up
CryoEM
Release date: May 25, 2022
Resolution: 4.2 Å
EM Method: Single-particle
Fitted PDBs: 7qdh
Q-score: 0.079

Ginex T, Marco-Marin C, Wieczor M, Mata CP, Krieger J, Ruiz-Rodriguez P, Lopez-Redondo ML, Frances-Gomez C, Melero R, Sanchez-Sorzano CO, Martinez M, Gougeard N, Forcada-Nadal A, Zamora-Caballero S, Gozalbo-Rovira R, Sanz-Frasquet C, Arranz R, Bravo J, Rubio V, Marina A, Geller R, Comas I, Gil C, Coscolla M, Orozco M, Llacer JL, Carazo JM

PLoS Pathog (2022) 18 pp. e1010631-e1010631 [ DOI: doi:10.1371/journal.ppat.1010631 Pubmed: 35816514 ]

EMD-13920
Download Map
3D View
SARS-CoV-2 S protein S:D614G mutant 2-up
CryoEM
Release date: May 25, 2022
Resolution: 8.8 Å
EM Method: Single-particle

Ginex T, Marco-Marin C, Wieczor M, Mata CP, Krieger J, Ruiz-Rodriguez P, Lopez-Redondo ML, Frances-Gomez C, Melero R, Sanchez-Sorzano CO, Martinez M, Gougeard N, Forcada-Nadal A, Zamora-Caballero S, Gozalbo-Rovira R, Sanz-Frasquet C, Arranz R, Bravo J, Rubio V, Marina A, Geller R, Comas I, Gil C, Coscolla M, Orozco M, Llacer JL, Carazo JM

PLoS Pathog (2022) 18 pp. e1010631-e1010631 [ DOI: doi:10.1371/journal.ppat.1010631 Pubmed: 35816514 ]

Sort by: Download
Showing 1 - 10 of 10. Page 1 of 1
Display:
Statistics
×

Download












































Preview first 10
Download

Filter By

Current Database

  • EMDB [9]
  • EMPIAR [1]

Current status

  • REL [10]

Sample type

  • Complex [9]
  • Protein [9]
  • Ligand [5]

Organism

  • Severe acute respiratory syndrome coronavirus [5]
  • Severe acute respiratory syndrome coronavirus [3]
  • Enterobacteria phage t4 [2]
  • Arabidopsis thaliana [1]

EM Method

  • Single-particle [9]

Resolution

  • ≥ 3Å and < 4Å [3]
  • ≥ 4Å and < 5Å [2]
  • ≥ 6Å and < 8Å [3]
  • ≥ 8Å and < 12Å [1]

Model molecular weight

  • 250-500 kDa [5]

Release Date

  • 2026 [1]
  • 2025 [1]
  • 2023 [2]
  • 2022 [6]

Author by name

  • Rubio V [10]
  • Forcada-nadal A [9]
  • Geller R [9]
  • Marina A [9]
  • Bravo J [8]
  • Gougeard N [8]
  • Llacer JL [8]
  • Lopez-redondo ML [8]
  • Melero R [8]
  • Marco-marin C [7]
  • Arranz R [6]
  • Carazo JM [6]
  • Comas I [6]
  • Coscolla M [6]
  • Gil C [6]
  • Ginex T [6]
  • Gozalbo-rovira R [6]
  • Krieger J [6]
  • Mata CP [6]
  • Orozco M [6]
  • Ruiz-rodriguez P [6]
  • Sanz-frasquet C [6]
  • Zamora-caballero S [6]
  • Frances-gomez C [5]
  • Martinez M [5]
  • Sanchez-sorzano CO [5]
  • Wieczor M [5]
  • Adhav A [3]
  • Marti-mari O [3]
  • Perez-perez MJ [3]
  • San-felix A [3]
  • Espinosa C [2]
  • Frances C [2]
  • Gargantilla M [2]
  • Hernandez-sierra MDP [2]
  • Martinez-gualda B [2]
  • Rubio-del-campo A [2]
  • Ruiz-partida R [2]
  • Villamayor-belinchon L [2]
  • Alabadi D [1]
  • Aviles-alia AI [1]
  • Blazquez AB [1]
  • Boskovic J [1]
  • Esteban A [1]
  • Fonseca S [1]
  • Francés-gómez C [1]
  • Gago F [1]
  • Jimenez De Oya N [1]
  • Llorca O [1]
  • Llácer JL [1]
  • Lopez ML [1]
  • Lopez-perrote A [1]
  • López-redondo ML [1]
  • Marco-marín C [1]
  • Martin-acebes MA [1]
  • Martínez M [1]
  • Moreno-simoni M [1]
  • Palacios-abella A [1]
  • Rusu L [1]
  • Sánchez-sorzano CÓ [1]
  • Urbez C [1]
  • Wieczór M [1]

Author by ORCID

  • Marina A [8]
  • Bravo J [7]
  • Carazo JM [5]
  • Arranz R [5]
  • Gil C [5]
  • Melero R [5]
  • Coscolla M [5]
  • Ginex T [5]
  • Comas I [5]
  • Martinez M [5]
  • Ruiz-rodriguez P [5]
  • Orozco M [5]
  • Mata CP [5]
  • Gozalbo-rovira R [5]
  • Zamora-caballero S [5]
  • Wieczor M [5]
  • Llacer JL [3]
  • Forcada-nadal A [3]
  • Perez-perez MJ [3]
  • San-felix A [3]
  • Gougeard N [2]
  • Frances C [2]
  • Ruiz-partida R [2]
  • Gargantilla M [2]
  • Adhav A [2]
  • Geller R [2]
  • Villamayor-belinchon L [2]
  • Rubio-del-campo A [2]
  • Marti-mari O [2]
  • Hernandez-sierra MDP [2]
  • Espinosa C [2]
  • Blazquez AB [1]
  • Gago F [1]

Journal

  • PLOS PATHOG [6]
  • J MED CHEM [2]
  • ACS OMEGA [1]
  • STRUCTURE [1]

Software

  • CRYOSPARC [6]
  • RELION [6]
  • SCIPION [6]

Microscope

  • FEI TALOS ARCTICA [7]
  • FEI TITAN KRIOS [1]
  • TFS GLACIOS [1]

Electron Source

  • FIELD EMISSION GUN [9]

Film or detector model

  • FEI FALCON III 4K X 4K [7]
  • FEI FALCON IV 4K X 4K [2]

EMPIAR Experiment type

  • EMDB [1]

EMPIAR Image category

  • MICROGRAPHS - SINGLE FRAME [1]

External links

  • PDB [9]
  • PDBe-Kb [9]
  • UniProt [9]
  • Complex Portal [6]
  • ChEBI [5]
  • ChEMBL [5]
  • AlphaFold DB [4]
  • Gene Ontology [3]
  • InterPro [3]
  • Pfam [3]
  • DrugBank [2]
  • EMDB [1]
  • EMPIAR [1]