Happy Holidays and New year from the EMDB! Please be advised that the EMDB team will be operating at reduced capacity between December 15th - January 12th. With this in mind we would ask that you be prepared for longer reply times through both our helpdesk system and the OneDep deposition system. well done on a productive 2025, wishing you all the best and we will see you in 2026!
Filter By
Current Database
- EMDB [365]
- EMPIAR [6]
Current status
- REL [371]
Sample type
- Complex [340]
- Protein [246]
- Ligand [91]
- Sample [19]
- Cellular component [6]
- DNA [2]
- Cell [1]
Organism
- Saccharomyces cerevisiae [107]
- Rattus norvegicus [46]
- Mycolicibacterium smegmatis [45]
- Homo sapiens [45]
- Caulobacter vibrioides [15]
- Mycolicibacterium smegmatis [12]
- Bos taurus [11]
- Pseudomonas aeruginosa [9]
- Legionella pneumophila [9]
- Saccharomyces cerevisiae [8]
- Bacillus sp. (strain ps3) [7]
- Synthetic construct [7]
- Citrus limon [6]
- Neisseria meningitidis [6]
- Candida albicans [5]
- Plasmodium falciparum [5]
- Escherichia coli [5]
- Mus musculus [4]
- Thermoplasma acidophilum [4]
- Severe acute respiratory syndrome coronavirus [4]
- Geobacter metallireducens [4]
- Legionella pneumophila [4]
- Geobacter metallireducens [4]
- Sus scrofa [4]
- Bacillus subtilis [3]
- Mycobacterium tuberculosis [3]
- Pseudomonas aeruginosa [3]
- Thermus thermophilus [3]
- Saccharomyces cerevisiae [3]
- Flavobacterium johnsoniae [3]
- Plasmodium falciparum [3]
- Legionella pneumophila [3]
- Staphylococcus aureus [2]
- Clostridioides difficile [2]
- Thermoplasma acidophilum [2]
- Escherichia coli [2]
- Drosophila melanogaster [2]
- Xenopus laevis [2]
- Human coronavirus 229e [1]
- Influenza a virus [1]
- Paeniclostridium sordellii [1]
- Corynebacterium glutamicum [1]
- Plasmodiidae sp. [1]
- Thermus thermophilus [1]
- Staphylococcus aureus [1]
- Influenza a virus [1]
- Plasmodium berghei [1]
- (no species) [1]
- Equus caballus [1]
EM Method
- Single-particle [365]
Resolution
- ≥ 2Å and < 3Å [60]
- ≥ 3Å and < 4Å [172]
- ≥ 4Å and < 5Å [55]
- ≥ 5Å and < 6Å [9]
- ≥ 6Å and < 8Å [50]
- ≥ 8Å and < 12Å [12]
- ≥ 12Å and < 16Å [1]
- ≥ 16Å and < 20Å [2]
- ≥ 20Å and < 30Å [1]
- ≥ 30Å [3]
Model molecular weight
- 50-100 kDa [1]
- 100-250 kDa [8]
- 250-500 kDa [41]
- 500-1000 kDa [73]
- 1-2 MDa [15]
Release Date
- 2025 [50]
- 2024 [20]
- 2023 [74]
- 2022 [83]
- 2021 [24]
- 2020 [51]
- 2019 [18]
- 2018 [7]
- 2017 [12]
- 2016 [15]
- 2015 [11]
- 2012 [2]
- 2011 [3]
- 2007 [1]
Author by name
- Rubinstein JL [370]
- Guo H [87]
- Bueler SA [78]
- Benlekbir S [60]
- Abbas YM [45]
- Brzezinski P [38]
- Liang Y [37]
- Courbon GM [31]
- Di Trani Jm [31]
- Howell PL [31]
- Vahidi S [27]
- Robinson CV [26]
- Tan YZ [26]
- Kay LE [25]
- Mazhab-jafari MT [24]
- Ripstein ZA [24]
- Burrows LL [23]
- Wu D [22]
- Julien JP [20]
- Keon KA [20]
- Kuntz DA [19]
- Narayanan N [19]
- Nguyen DM [19]
- Prive GG [19]
- Devost D [18]
- Hebert TE [18]
- Ji AX [18]
- Keszei AFA [18]
- Mian MUQ [18]
- Petrin D [18]
- Pomroy NC [18]
- Rath DH [18]
- Rizk R [18]
- Rubinstein J [18]
- Yong D [18]
- Zhai A [18]
- Imming P [17]
- Brun YV [15]
- Liu J [15]
- Moe A [15]
- Whitfield GB [15]
- Yen IY [15]
- Kucharska I [12]
- Mai J [12]
- Rohou A [12]
- Vasanthakumar T [12]
- Di Trani J [11]
- Schep DG [11]
- Cui H [10]
- Walker JE [10]
- Abdelaziz R [9]
- Adelroth P [9]
- Coupland CE [9]
- Wang H [9]
- Zhao J [9]
- Bason JV [8]
- Gheorghita AA [8]
- Grigorieff N [8]
- Mann L [8]
- Montgomery MG [8]
- Palme PR [8]
- Richter A [8]
- Turner M [8]
- Zhou A [8]
- Deng Y [7]
- Franken E [7]
- Houry WA [7]
- Huang SK [7]
- Janssen B [7]
- Jaskolka MC [7]
- Kanelis V [7]
- Mccallum M [7]
- Prieto K [7]
- Sicard T [7]
- Singla Lezcano G [7]
- Suzuki T [7]
- Tammam S [7]
- Yu L [7]
- Christie-holmes N [6]
- Hailemariam S [6]
- Inklaar MR [6]
- Ivanochko D [6]
- Jore MM [6]
- Juravsky JB [6]
- Karimi R [6]
- Mubareka S [6]
- Muthuraman K [6]
- Rujas E [6]
- Saghian R [6]
- Schulze W [6]
- Schumacher K [6]
- Semesi A [6]
- Stoter R [6]
- Treanor B [6]
- Wang LY [6]
- Wong CJ [6]
- Youn JY [6]
- Van Gemert Gj [6]
- Beilsten-edmands V [5]
- Cook GM [5]
Author by ORCID
- Rubinstein JL [197]
- Guo H [52]
- Brzezinski P [23]
- Liang Y [21]
- Courbon GM [18]
- Tan YZ [17]
- Vahidi S [17]
- Ripstein ZA [16]
- Howell PL [15]
- Burrows LL [15]
- Mazhab-jafari MT [14]
- Julien JP [13]
- Devost D [11]
- Robinson CV [11]
- Prive GG [11]
- Yen IY [11]
- Moe A [11]
- Hebert TE [11]
- Nguyen DM [11]
- Brun YV [11]
- Whitfield GB [11]
- Rath DH [11]
- Kuntz DA [11]
- Di Trani Jm [11]
- Yong D [11]
- Mian MUQ [11]
- Pomroy NC [11]
- Kucharska I [10]
- Kay LE [10]
- Liu J [9]
- Zhao J [8]
- Benlekbir S [7]
- Mccallum M [7]
- Gheorghita AA [7]
- Rubinstein JL [7]
- Adelroth P [7]
- Turner M [7]
- Abbas YM [6]
- Montgomery MG [6]
- Walker JE [6]
- Rohou A [6]
- Rujas E [6]
- Coupland CE [6]
- Treanor B [6]
- Huang SK [6]
- Imming P [6]
- Keon KA [5]
- Wang H [5]
- Jaskolka MC [5]
- Cowen LE [4]
- Whitesell L [4]
- Augustyniak R [4]
- Wu JZ [4]
- Youn JY [4]
- Pan A [4]
- Forman-kay JD [4]
- Aschner CB [4]
- Grinstein S [4]
- Gray-owen SD [4]
- Wang LY [4]
- Hesketh GG [4]
- Gingras AC [4]
- Guvenc F [4]
- Karimi R [4]
- Saghian R [4]
- Wong CJ [4]
- Vasanthakumar T [3]
- Cook GM [3]
- Lau WC [3]
- Yoo R [3]
- Kooij TWA [3]
- Bousema T [3]
- Kane PM [3]
- Beilsten-edmands V [3]
- Mubareka S [2]
- Sun C [2]
- Huang Y [2]
- Berman JM [2]
- Glogl M [2]
- Christie-holmes N [2]
- Liang H [2]
- Palou R [2]
- Baker D [2]
- Luo ZQ [2]
- Burn Aschner C [2]
- Schmidt C [2]
- Wilson MD [2]
- Schramek D [2]
- Mcarthur AG [2]
- Razi A [2]
- Vendruscolo M [2]
- Mittermaier AK [2]
- Plourde A [2]
- Huang R [2]
- Rui H [2]
- Liu Y [2]
- Fradet-turcotte A [2]
- Nair MS [2]
- Xu L [2]
- Ragotte RJ [2]
Journal
- NAT COMMUN [83]
- BIORXIV [80]
- PNAS [73]
- TO BE PUBLISHED [57]
- ELIFE [28]
- NATURE [25]
- SCIENCE [21]
- STRUCTURE [17]
- NAT STRUCT MOL BIOL [11]
- EMBO J [9]
- IUCRJ [7]
- ACTA CRYSTALLOGR D STRUCT BIOL [5]
- LIFE SCI ALLIANCE [5]
- MOL CELL [4]
- PLOS PATHOG [4]
- NUCLEIC ACIDS RES [3]
- ACS CHEM BIOL [2]
- CELL [2]
- CHEMISTRY [2]
- J MED CHEM [2]
- SCI TRANSL MED [2]
- IMMUNITY [1]
- J AM CHEM SOC [1]
- J MOL BIOL [1]
Software
- CRYOSPARC [200]
- RELION [40]
- CTFFIND [15]
- CHIMERA, MDFF [10]
- RELION, FREALIGN [8]
- UCSF CHIMERAX [3]
- CTFFIND4 [2]
- CISTEM [1]
- CTFFIND3 [1]
- FREALIGN [1]
- FREALIGN, REFINE_FSPACE, BUILD_FSPACE [1]
- IMAGIC, FREALIGN, ROTAN [1]
- IMODFIT [1]
- O [1]
- PHENIX [1]
- ROTAN, FREALIGN [1]
- ROTAN, SPIDER, FREALIGN [1]
- SEARCH_FSPACE, REFINE_FSPACE, BUILD_FSPACE [1]
- SPIDER, ROTAN, FREALIGN, BUILD_FSPACE [1]
- UCSF CHIMERA [1]
Microscope
- FEI TITAN KRIOS [222]
- TFS KRIOS [97]
- FEI TECNAI F20 [42]
- FEI TECNAI 20 [4]
Electron Source
- FIELD EMISSION GUN [365]
Film or detector model
- FEI FALCON IV 4K X 4K [200]
- TFS FALCON 4I 4K X 4K [56]
- GATAN K2 SUMMIT 4K X 4K [39]
- FEI FALCON III 4K X 4K [38]
- GATAN K2 4K X 4K [11]
- KODAK SO-163 FILM [6]
- OTHER [5]
- GATAN K3 BIOQUANTUM 6K X 4K [4]
- GATAN K2 QUANTUM 4K X 4K [3]
- GATAN ORIUS SC200 2K X 2K [2]
- GATAN K3 6K X 4K [1]
EMPIAR Experiment type
- EMDB [6]
EMPIAR Image category
- MICROGRAPHS - MULTIFRAME [5]
- MICROGRAPHS - SINGLE FRAME [5]
- PICKED PARTICLES - SINGLE FRAME - PROCESSED [3]
- PICKED PARTICLES - MULTIFRAME - PROCESSED [2]
External links
- AlphaFold DB [227]
- UniProt [162]
- PDB [138]
- PDBe-Kb [131]
- Pfam [119]
- Gene Ontology [116]
- InterPro [112]
- ChEBI [57]
- ChEMBL [55]
- DrugBank [52]
- Complex Portal [35]
- EMPIAR [31]
- EMDB [6]
- SCOP2 [5]
- CATH [1]
Resolution: 2.0 Å
EM Method: Single-particle
Fitted PDBs: 9yx0
Q-score: 0.639
Liang Y, Rubinstein JL
To Be Published
Resolution: 2.9 Å
EM Method: Single-particle
Liang Y, Rubinstein JL
To Be Published
Resolution: 3.3 Å
EM Method: Single-particle
Liang Y, Rubinstein JL
To Be Published
Resolution: 3.4 Å
EM Method: Single-particle
Liang Y, Rubinstein JL
To Be Published
Resolution: 3.4 Å
EM Method: Single-particle
Liang Y, Rubinstein JL
To Be Published
Resolution: 4.0 Å
EM Method: Single-particle
Liang Y, Rubinstein JL
To Be Published
Resolution: 3.5 Å
EM Method: Single-particle
Fitted PDBs: 9yx1
Q-score: 0.509
Liang Y, Rubinstein JL
To Be Published
Resolution: 2.3 Å
EM Method: Single-particle
Liang Y, Rubinstein JL
To Be Published
Resolution: 2.8 Å
EM Method: Single-particle
Liang Y, Rubinstein JL
To Be Published
Resolution: 3.0 Å
EM Method: Single-particle
Liang Y, Rubinstein JL
To Be Published
Filter By
Current Database
- EMDB [365]
- EMPIAR [6]
Current status
- REL [371]
Sample type
- Complex [340]
- Protein [246]
- Ligand [91]
- Sample [19]
- Cellular component [6]
- DNA [2]
- Cell [1]
Organism
- Saccharomyces cerevisiae [107]
- Rattus norvegicus [46]
- Mycolicibacterium smegmatis [45]
- Homo sapiens [45]
- Caulobacter vibrioides [15]
- Mycolicibacterium smegmatis [12]
- Bos taurus [11]
- Pseudomonas aeruginosa [9]
- Legionella pneumophila [9]
- Saccharomyces cerevisiae [8]
- Bacillus sp. (strain ps3) [7]
- Synthetic construct [7]
- Citrus limon [6]
- Neisseria meningitidis [6]
- Candida albicans [5]
- Plasmodium falciparum [5]
- Escherichia coli [5]
- Mus musculus [4]
- Thermoplasma acidophilum [4]
- Severe acute respiratory syndrome coronavirus [4]
- Geobacter metallireducens [4]
- Legionella pneumophila [4]
- Geobacter metallireducens [4]
- Sus scrofa [4]
- Bacillus subtilis [3]
- Mycobacterium tuberculosis [3]
- Pseudomonas aeruginosa [3]
- Thermus thermophilus [3]
- Saccharomyces cerevisiae [3]
- Flavobacterium johnsoniae [3]
- Plasmodium falciparum [3]
- Legionella pneumophila [3]
- Staphylococcus aureus [2]
- Clostridioides difficile [2]
- Thermoplasma acidophilum [2]
- Escherichia coli [2]
- Drosophila melanogaster [2]
- Xenopus laevis [2]
- Human coronavirus 229e [1]
- Influenza a virus [1]
- Paeniclostridium sordellii [1]
- Corynebacterium glutamicum [1]
- Plasmodiidae sp. [1]
- Thermus thermophilus [1]
- Staphylococcus aureus [1]
- Influenza a virus [1]
- Plasmodium berghei [1]
- (no species) [1]
- Equus caballus [1]
EM Method
- Single-particle [365]
Resolution
- ≥ 2Å and < 3Å [60]
- ≥ 3Å and < 4Å [172]
- ≥ 4Å and < 5Å [55]
- ≥ 5Å and < 6Å [9]
- ≥ 6Å and < 8Å [50]
- ≥ 8Å and < 12Å [12]
- ≥ 12Å and < 16Å [1]
- ≥ 16Å and < 20Å [2]
- ≥ 20Å and < 30Å [1]
- ≥ 30Å [3]
Model molecular weight
- 50-100 kDa [1]
- 100-250 kDa [8]
- 250-500 kDa [41]
- 500-1000 kDa [73]
- 1-2 MDa [15]
Release Date
- 2025 [50]
- 2024 [20]
- 2023 [74]
- 2022 [83]
- 2021 [24]
- 2020 [51]
- 2019 [18]
- 2018 [7]
- 2017 [12]
- 2016 [15]
- 2015 [11]
- 2012 [2]
- 2011 [3]
- 2007 [1]
Author by name
- Rubinstein JL [370]
- Guo H [87]
- Bueler SA [78]
- Benlekbir S [60]
- Abbas YM [45]
- Brzezinski P [38]
- Liang Y [37]
- Courbon GM [31]
- Di Trani Jm [31]
- Howell PL [31]
- Vahidi S [27]
- Robinson CV [26]
- Tan YZ [26]
- Kay LE [25]
- Mazhab-jafari MT [24]
- Ripstein ZA [24]
- Burrows LL [23]
- Wu D [22]
- Julien JP [20]
- Keon KA [20]
- Kuntz DA [19]
- Narayanan N [19]
- Nguyen DM [19]
- Prive GG [19]
- Devost D [18]
- Hebert TE [18]
- Ji AX [18]
- Keszei AFA [18]
- Mian MUQ [18]
- Petrin D [18]
- Pomroy NC [18]
- Rath DH [18]
- Rizk R [18]
- Rubinstein J [18]
- Yong D [18]
- Zhai A [18]
- Imming P [17]
- Brun YV [15]
- Liu J [15]
- Moe A [15]
- Whitfield GB [15]
- Yen IY [15]
- Kucharska I [12]
- Mai J [12]
- Rohou A [12]
- Vasanthakumar T [12]
- Di Trani J [11]
- Schep DG [11]
- Cui H [10]
- Walker JE [10]
- Abdelaziz R [9]
- Adelroth P [9]
- Coupland CE [9]
- Wang H [9]
- Zhao J [9]
- Bason JV [8]
- Gheorghita AA [8]
- Grigorieff N [8]
- Mann L [8]
- Montgomery MG [8]
- Palme PR [8]
- Richter A [8]
- Turner M [8]
- Zhou A [8]
- Deng Y [7]
- Franken E [7]
- Houry WA [7]
- Huang SK [7]
- Janssen B [7]
- Jaskolka MC [7]
- Kanelis V [7]
- Mccallum M [7]
- Prieto K [7]
- Sicard T [7]
- Singla Lezcano G [7]
- Suzuki T [7]
- Tammam S [7]
- Yu L [7]
- Christie-holmes N [6]
- Hailemariam S [6]
- Inklaar MR [6]
- Ivanochko D [6]
- Jore MM [6]
- Juravsky JB [6]
- Karimi R [6]
- Mubareka S [6]
- Muthuraman K [6]
- Rujas E [6]
- Saghian R [6]
- Schulze W [6]
- Schumacher K [6]
- Semesi A [6]
- Stoter R [6]
- Treanor B [6]
- Wang LY [6]
- Wong CJ [6]
- Youn JY [6]
- Van Gemert Gj [6]
- Beilsten-edmands V [5]
- Cook GM [5]
Author by ORCID
- Rubinstein JL [197]
- Guo H [52]
- Brzezinski P [23]
- Liang Y [21]
- Courbon GM [18]
- Tan YZ [17]
- Vahidi S [17]
- Ripstein ZA [16]
- Howell PL [15]
- Burrows LL [15]
- Mazhab-jafari MT [14]
- Julien JP [13]
- Devost D [11]
- Robinson CV [11]
- Prive GG [11]
- Yen IY [11]
- Moe A [11]
- Hebert TE [11]
- Nguyen DM [11]
- Brun YV [11]
- Whitfield GB [11]
- Rath DH [11]
- Kuntz DA [11]
- Di Trani Jm [11]
- Yong D [11]
- Mian MUQ [11]
- Pomroy NC [11]
- Kucharska I [10]
- Kay LE [10]
- Liu J [9]
- Zhao J [8]
- Benlekbir S [7]
- Mccallum M [7]
- Gheorghita AA [7]
- Rubinstein JL [7]
- Adelroth P [7]
- Turner M [7]
- Abbas YM [6]
- Montgomery MG [6]
- Walker JE [6]
- Rohou A [6]
- Rujas E [6]
- Coupland CE [6]
- Treanor B [6]
- Huang SK [6]
- Imming P [6]
- Keon KA [5]
- Wang H [5]
- Jaskolka MC [5]
- Cowen LE [4]
- Whitesell L [4]
- Augustyniak R [4]
- Wu JZ [4]
- Youn JY [4]
- Pan A [4]
- Forman-kay JD [4]
- Aschner CB [4]
- Grinstein S [4]
- Gray-owen SD [4]
- Wang LY [4]
- Hesketh GG [4]
- Gingras AC [4]
- Guvenc F [4]
- Karimi R [4]
- Saghian R [4]
- Wong CJ [4]
- Vasanthakumar T [3]
- Cook GM [3]
- Lau WC [3]
- Yoo R [3]
- Kooij TWA [3]
- Bousema T [3]
- Kane PM [3]
- Beilsten-edmands V [3]
- Mubareka S [2]
- Sun C [2]
- Huang Y [2]
- Berman JM [2]
- Glogl M [2]
- Christie-holmes N [2]
- Liang H [2]
- Palou R [2]
- Baker D [2]
- Luo ZQ [2]
- Burn Aschner C [2]
- Schmidt C [2]
- Wilson MD [2]
- Schramek D [2]
- Mcarthur AG [2]
- Razi A [2]
- Vendruscolo M [2]
- Mittermaier AK [2]
- Plourde A [2]
- Huang R [2]
- Rui H [2]
- Liu Y [2]
- Fradet-turcotte A [2]
- Nair MS [2]
- Xu L [2]
- Ragotte RJ [2]
Journal
- NAT COMMUN [83]
- BIORXIV [80]
- PNAS [73]
- TO BE PUBLISHED [57]
- ELIFE [28]
- NATURE [25]
- SCIENCE [21]
- STRUCTURE [17]
- NAT STRUCT MOL BIOL [11]
- EMBO J [9]
- IUCRJ [7]
- ACTA CRYSTALLOGR D STRUCT BIOL [5]
- LIFE SCI ALLIANCE [5]
- MOL CELL [4]
- PLOS PATHOG [4]
- NUCLEIC ACIDS RES [3]
- ACS CHEM BIOL [2]
- CELL [2]
- CHEMISTRY [2]
- J MED CHEM [2]
- SCI TRANSL MED [2]
- IMMUNITY [1]
- J AM CHEM SOC [1]
- J MOL BIOL [1]
Software
- CRYOSPARC [200]
- RELION [40]
- CTFFIND [15]
- CHIMERA, MDFF [10]
- RELION, FREALIGN [8]
- UCSF CHIMERAX [3]
- CTFFIND4 [2]
- CISTEM [1]
- CTFFIND3 [1]
- FREALIGN [1]
- FREALIGN, REFINE_FSPACE, BUILD_FSPACE [1]
- IMAGIC, FREALIGN, ROTAN [1]
- IMODFIT [1]
- O [1]
- PHENIX [1]
- ROTAN, FREALIGN [1]
- ROTAN, SPIDER, FREALIGN [1]
- SEARCH_FSPACE, REFINE_FSPACE, BUILD_FSPACE [1]
- SPIDER, ROTAN, FREALIGN, BUILD_FSPACE [1]
- UCSF CHIMERA [1]
Microscope
- FEI TITAN KRIOS [222]
- TFS KRIOS [97]
- FEI TECNAI F20 [42]
- FEI TECNAI 20 [4]
Electron Source
- FIELD EMISSION GUN [365]
Film or detector model
- FEI FALCON IV 4K X 4K [200]
- TFS FALCON 4I 4K X 4K [56]
- GATAN K2 SUMMIT 4K X 4K [39]
- FEI FALCON III 4K X 4K [38]
- GATAN K2 4K X 4K [11]
- KODAK SO-163 FILM [6]
- OTHER [5]
- GATAN K3 BIOQUANTUM 6K X 4K [4]
- GATAN K2 QUANTUM 4K X 4K [3]
- GATAN ORIUS SC200 2K X 2K [2]
- GATAN K3 6K X 4K [1]
EMPIAR Experiment type
- EMDB [6]
EMPIAR Image category
- MICROGRAPHS - MULTIFRAME [5]
- MICROGRAPHS - SINGLE FRAME [5]
- PICKED PARTICLES - SINGLE FRAME - PROCESSED [3]
- PICKED PARTICLES - MULTIFRAME - PROCESSED [2]
External links
- AlphaFold DB [227]
- UniProt [162]
- PDB [138]
- PDBe-Kb [131]
- Pfam [119]
- Gene Ontology [116]
- InterPro [112]
- ChEBI [57]
- ChEMBL [55]
- DrugBank [52]
- Complex Portal [35]
- EMPIAR [31]
- EMDB [6]
- SCOP2 [5]
- CATH [1]
