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author:"Omorodion O"

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Current Database

  • EMDB [15]

Current status

  • REL [15]

Sample type

  • Complex [15]
  • Protein [14]
  • Ligand [6]

Organism

  • Human immunodeficiency virus 1 [15]
  • Homo sapiens [14]
  • Macaca mulatta [1]

EM Method

  • Single-particle [15]

Resolution

  • ≥ 2Å and < 3Å [1]
  • ≥ 3Å and < 4Å [2]
  • ≥ 4Å and < 5Å [4]
  • ≥ 5Å and < 6Å [2]
  • ≥ 6Å and < 8Å [1]
  • ≥ 8Å and < 12Å [1]
  • ≥ 20Å and < 30Å [1]
  • ≥ 30Å [3]

Model molecular weight

  • 250-500 kDa [6]

Release Date

  • 2022 [6]
  • 2018 [9]

Author by name

  • Berndsen ZT [15]
  • Landais E [15]
  • Omorodion O [15]
  • Paulson JC [15]
  • Ward AB [15]
  • Wilson IA [15]
  • Cao L [9]
  • Copps J [9]
  • Murrell S [9]
  • Poignard P [9]
  • Rantalainen K [9]
  • Torres JL [9]
  • Umotoy J [9]
  • Wu M [9]
  • Adachi Y [6]
  • Alavi NB [6]
  • Allen JD [6]
  • Baboo S [6]
  • Carfi A [6]
  • Crispin M [6]
  • Diedrich JK [6]
  • Eskandarzadeh S [6]
  • Falcone S [6]
  • Georgeson E [6]
  • Groschel B [6]
  • Himansu S [6]
  • Hu X [6]
  • Kalyuzhniy O [6]
  • Kubitz M [6]
  • Liguori A [6]
  • Ma KM [6]
  • Mullin TM [6]
  • Phelps N [6]
  • Schief WR [6]
  • Schiffner T [6]
  • Steichen JM [6]
  • Willis JR [6]
  • Berndsens ZB [5]
  • Rantalainen KR [5]
  • Yates 3Rd Jr [5]

Author by ORCID

  • Omorodion O [15]
  • Poignard P [9]
  • Rantalainen K [9]
  • Torres JL [9]
  • Umotoy J [9]
  • Schiffner T [6]
  • Crispin M [6]
  • Schief WR [6]
  • Baboo S [6]
  • Himansu S [6]
  • Allen JD [6]

Journal

  • CELL REP [9]
  • IMMUNITY [6]

Software

  • RELION [9]

Microscope

  • FEI TITAN KRIOS [7]
  • FEI TALOS ARCTICA [4]
  • FEI TECNAI SPIRIT [4]

Electron Source

  • FIELD EMISSION GUN [11]
  • LAB6 [4]

Film or detector model

  • GATAN K2 SUMMIT 4K X 4K [11]
  • TVIPS TEMCAM-F416 4K X 4K [3]
  • FEI EAGLE 4K X 4K [1]

External links

  • PDB [15]
  • AlphaFold DB [13]
  • PDBe-Kb [13]
  • UniProt [13]
  • ChEBI [6]
  • ChEMBL [6]
  • Complex Portal [4]
  • Gene Ontology [1]
  • InterPro [1]
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Showing 1 - 10 of 15. Page 1 of 2
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EMD-25622
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3D View
Negative Stain EM reconstruction of ApexGT3 in complex with two copies of PG9 Fab
Negative staining
Release date: Oct. 19, 2022
Resolution: 26.0 Å
EM Method: Single-particle

Willis JR, Berndsen ZT, Ma KM, Steichen JM, Schiffner T, Landais E, Liguori A, Kalyuzhniy O, Allen JD, Baboo S, Omorodion O, Diedrich JK, Hu X, Georgeson E, Phelps N, Eskandarzadeh S, Groschel B, Kubitz M, Adachi Y, Mullin TM, Alavi NB, Falcone S, Himansu S, Carfi A, Wilson IA, Paulson JC, Crispin M, Ward AB, Schief WR

Immunity (2022) 55 pp. 2149-2167.e9 [ Pubmed: 36179689 DOI: doi:10.1016/j.immuni.2022.09.001 ]

EMD-25732
Download Map
3D View
HIV-1 Envelope ApexGT2.2MUT in complex with PCT64.LMCA Fab
CryoEM
Release date: Sept. 28, 2022
Resolution: 4.0 Å
EM Method: Single-particle
Fitted PDBs: 7t73
Q-score: 0.388

Willis JR, Berndsen ZT, Ma KM, Steichen JM, Schiffner T, Landais E, Liguori A, Kalyuzhniy O, Allen JD, Baboo S, Omorodion O, Diedrich JK, Hu X, Georgeson E, Phelps N, Eskandarzadeh S, Groschel B, Kubitz M, Adachi Y, Mullin TM, Alavi NB, Falcone S, Himansu S, Carfi A, Wilson IA, Yates 3rd JR, Paulson JC, Crispin M, Ward AB, Schief WR

Immunity (2022) 55 pp. 2149- [ Pubmed: 36179689 DOI: doi:10.1016/j.immuni.2022.09.001 ]

EMD-25733
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3D View
HIV-1 Envelope ApexGT2 in complex with PCT64.35S Fab and RM20A3 Fab
CryoEM
Release date: Sept. 28, 2022
Resolution: 3.35 Å
EM Method: Single-particle
Fitted PDBs: 7t74
Q-score: 0.476

Willis JR, Berndsen ZT, Ma KM, Steichen JM, Schiffner T, Landais E, Liguori A, Kalyuzhniy O, Allen JD, Baboo S, Omorodion O, Diedrich JK, Hu X, Georgeson E, Phelps N, Eskandarzadeh S, Groschel B, Kubitz M, Adachi Y, Mullin TM, Alavi NB, Falcone S, Himansu S, Carfi A, Wilson IA, Yates 3rd JR, Paulson JC, Crispin M, Ward AB, Schief WR

Immunity (2022) 55 pp. 2149- [ Pubmed: 36179689 DOI: doi:10.1016/j.immuni.2022.09.001 ]

EMD-25734
Download Map
3D View
HIV-1 Envelope ApexGT2 in complex with RM20A3 Fab
CryoEM
Release date: Sept. 28, 2022
Resolution: 2.7 Å
EM Method: Single-particle
Fitted PDBs: 7t75
Q-score: 0.58

Willis JR, Berndsen ZT, Ma KM, Steichen JM, Schiffner T, Landais E, Liguori A, Kalyuzhniy O, Allen JD, Baboo S, Omorodion O, Diedrich JK, Hu X, Georgeson E, Phelps N, Eskandarzadeh S, Groschel B, Kubitz M, Adachi Y, Mullin TM, Alavi NB, Falcone S, Himansu S, Carfi A, Wilson IA, Yates 3rd JR, Paulson JC, Crispin M, Ward AB, Schief WR

Immunity (2022) 55 pp. 2149- [ Pubmed: 36179689 DOI: doi:10.1016/j.immuni.2022.09.001 ]

EMD-25735
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3D View
HIV-1 Envelope ApexGT3 in complex with PG9.iGL Fab
CryoEM
Release date: Sept. 28, 2022
Resolution: 4.43 Å
EM Method: Single-particle
Fitted PDBs: 7t76
Q-score: 0.324

Willis JR, Berndsen ZT, Ma KM, Steichen JM, Schiffner T, Landais E, Liguori A, Kalyuzhniy O, Allen JD, Baboo S, Omorodion O, Diedrich JK, Hu X, Georgeson E, Phelps N, Eskandarzadeh S, Groschel B, Kubitz M, Adachi Y, Mullin TM, Alavi NB, Falcone S, Himansu S, Carfi A, Wilson IA, Yates 3rd JR, Paulson JC, Crispin M, Ward AB, Schief WR

Immunity (2022) 55 pp. 2149- [ Pubmed: 36179689 DOI: doi:10.1016/j.immuni.2022.09.001 ]

EMD-25736
Download Map
3D View
HIV-1 Envelope ApexGT3.N130 in complex with PG9 Fab
CryoEM
Release date: Sept. 28, 2022
Resolution: 4.75 Å
EM Method: Single-particle
Fitted PDBs: 7t77
Q-score: 0.282

Willis JR, Berndsen ZT, Ma KM, Steichen JM, Schiffner T, Landais E, Liguori A, Kalyuzhniy O, Allen JD, Baboo S, Omorodion O, Diedrich JK, Hu X, Georgeson E, Phelps N, Eskandarzadeh S, Groschel B, Kubitz M, Adachi Y, Mullin TM, Alavi NB, Falcone S, Himansu S, Carfi A, Wilson IA, Yates 3rd JR, Paulson JC, Crispin M, Ward AB, Schief WR

Immunity (2022) 55 pp. 2149- [ Pubmed: 36179689 DOI: doi:10.1016/j.immuni.2022.09.001 ]

EMD-7858
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3D View
Ectodomain of full length, wild type HIV-1 glycoprotein clone PC64M18C043 in complex with PGT151 Fab
CryoEM
Release date: June 27, 2018
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 6dcq
Q-score: 0.509

Rantalainen K, Berndsen ZT, Murrell S, Cao L, Omorodion O, Torres JL, Wu M, Umotoy J, Copps J, Poignard P, Landais E, Paulson JC, Wilson IA, Ward AB

Cell Rep (2018) 23 pp. 3249-3261 [ Pubmed: 29898396 DOI: doi:10.1016/j.celrep.2018.05.046 ]

EMD-7859
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3D View
Full Length HIV-1 Envelope Glycoprotein clone PC64M18C043 in complex with PGT151 Fab and PCT64-35S Fab
CryoEM
Release date: June 27, 2018
Resolution: 6.8 Å
EM Method: Single-particle

Rantalainen K, Berndsen ZT, Murrell S, Cao L, Omorodion O, Torres JL, Wu M, Umotoy J, Copps J, Poignard P, Landais E, Paulson JC, Wilson IA, Ward AB

Cell Rep (2018) 23 pp. 3249-3261 [ Pubmed: 29898396 DOI: doi:10.1016/j.celrep.2018.05.046 ]

EMD-7860
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HIV-1 Envelope Glycoprotein clone PC64M18C043.SOSIP.664 complex with PGT151 Fab
CryoEM
Release date: June 27, 2018
Resolution: 4.9 Å
EM Method: Single-particle

Rantalainen K, Berndsen ZT, Murrell S, Cao L, Omorodion O, Torres JL, Wu M, Umotoy J, Copps J, Poignard P, Landais E, Paulson JC, Wilson IA, Ward AB

Cell Rep (2018) 23 pp. 3249-3261 [ Pubmed: 29898396 DOI: doi:10.1016/j.celrep.2018.05.046 ]

EMD-7861
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3D View
Full length HIV-1 Envelope Glycoprotein clone PC64M4C054 in complex with PGT151 Fab and PCT64-13C Fab
Negative staining
Release date: June 27, 2018
Resolution: 30.0 Å
EM Method: Single-particle

Rantalainen K, Berndsen ZT, Murrell S, Cao L, Omorodion O, Torres JL, Wu M, Umotoy J, Copps J, Poignard P, Landais E, Paulson JC, Wilson IA, Ward AB

Cell Rep (2018) 23 pp. 3249-3261 [ Pubmed: 29898396 DOI: doi:10.1016/j.celrep.2018.05.046 ]

Sort by: Download
Showing 1 - 10 of 15. Page 1 of 2
Display:
Statistics
×

Download











































Preview first 10
Download

Filter By

Current Database

  • EMDB [15]

Current status

  • REL [15]

Sample type

  • Complex [15]
  • Protein [14]
  • Ligand [6]

Organism

  • Human immunodeficiency virus 1 [15]
  • Homo sapiens [14]
  • Macaca mulatta [1]

EM Method

  • Single-particle [15]

Resolution

  • ≥ 2Å and < 3Å [1]
  • ≥ 3Å and < 4Å [2]
  • ≥ 4Å and < 5Å [4]
  • ≥ 5Å and < 6Å [2]
  • ≥ 6Å and < 8Å [1]
  • ≥ 8Å and < 12Å [1]
  • ≥ 20Å and < 30Å [1]
  • ≥ 30Å [3]

Model molecular weight

  • 250-500 kDa [6]

Release Date

  • 2022 [6]
  • 2018 [9]

Author by name

  • Berndsen ZT [15]
  • Landais E [15]
  • Omorodion O [15]
  • Paulson JC [15]
  • Ward AB [15]
  • Wilson IA [15]
  • Cao L [9]
  • Copps J [9]
  • Murrell S [9]
  • Poignard P [9]
  • Rantalainen K [9]
  • Torres JL [9]
  • Umotoy J [9]
  • Wu M [9]
  • Adachi Y [6]
  • Alavi NB [6]
  • Allen JD [6]
  • Baboo S [6]
  • Carfi A [6]
  • Crispin M [6]
  • Diedrich JK [6]
  • Eskandarzadeh S [6]
  • Falcone S [6]
  • Georgeson E [6]
  • Groschel B [6]
  • Himansu S [6]
  • Hu X [6]
  • Kalyuzhniy O [6]
  • Kubitz M [6]
  • Liguori A [6]
  • Ma KM [6]
  • Mullin TM [6]
  • Phelps N [6]
  • Schief WR [6]
  • Schiffner T [6]
  • Steichen JM [6]
  • Willis JR [6]
  • Berndsens ZB [5]
  • Rantalainen KR [5]
  • Yates 3Rd Jr [5]

Author by ORCID

  • Omorodion O [15]
  • Poignard P [9]
  • Rantalainen K [9]
  • Torres JL [9]
  • Umotoy J [9]
  • Schiffner T [6]
  • Crispin M [6]
  • Schief WR [6]
  • Baboo S [6]
  • Himansu S [6]
  • Allen JD [6]

Journal

  • CELL REP [9]
  • IMMUNITY [6]

Software

  • RELION [9]

Microscope

  • FEI TITAN KRIOS [7]
  • FEI TALOS ARCTICA [4]
  • FEI TECNAI SPIRIT [4]

Electron Source

  • FIELD EMISSION GUN [11]
  • LAB6 [4]

Film or detector model

  • GATAN K2 SUMMIT 4K X 4K [11]
  • TVIPS TEMCAM-F416 4K X 4K [3]
  • FEI EAGLE 4K X 4K [1]

External links

  • PDB [15]
  • AlphaFold DB [13]
  • PDBe-Kb [13]
  • UniProt [13]
  • ChEBI [6]
  • ChEMBL [6]
  • Complex Portal [4]
  • Gene Ontology [1]
  • InterPro [1]