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author:"Oldham ML"

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Current Database

  • EMDB [18]
  • EMPIAR [9]

Current status

  • REL [27]

Sample type

  • Protein [18]
  • Complex [17]
  • Ligand [3]
  • Sample [1]

Organism

  • Homo sapiens [11]
  • Synthetic construct [5]
  • Staphylococcus aureus [4]
  • Human herpesvirus 1 [2]
  • Mus musculus [1]
  • Human immunodeficiency virus 1 [1]
  • Acetivibrio thermocellus [1]
  • Acetivibrio thermocellus [1]
  • Bos taurus [1]

EM Method

  • Single-particle [18]

Resolution

  • ≥ 2Å and < 3Å [4]
  • ≥ 3Å and < 4Å [12]
  • ≥ 5Å and < 6Å [1]
  • ≥ 6Å and < 8Å [1]

Model molecular weight

  • 100-250 kDa [15]
  • 250-500 kDa [1]
  • 500-1000 kDa [1]

Release Date

  • 2026 [2]
  • 2025 [3]
  • 2024 [16]
  • 2023 [1]
  • 2021 [2]
  • 2020 [1]
  • 2017 [1]
  • 2016 [1]

Author by name

  • Oldham ML [27]
  • Chen J [20]
  • Lee J [14]
  • Manon V [14]
  • Kalathur RC [7]
  • Qayyum MZ [4]
  • Radka CD [4]
  • Rock CO [4]
  • Bentz K [2]
  • Chait BT [2]
  • Chidambaram A [2]
  • Grace CR [2]
  • Grigorieff N [2]
  • Hasdemir HS [2]
  • Jiang Y [2]
  • Kieuvongngam V [2]
  • Li Y [2]
  • Maccain WJ [2]
  • Madesh AK [2]
  • Madesh M [2]
  • Olinares PDB [2]
  • Palillo A [2]
  • Pitre A [2]
  • Rodrigues P [2]
  • Rodriguez CC [2]
  • Shi N [2]
  • Stathopulos PB [2]
  • Tajkhorshid E [2]
  • Venkatesan M [2]
  • Vishnu N [2]
  • Zuhaib Qayyum M [2]
  • Abbas A [1]
  • Barbieri A [1]
  • Baril SA [1]
  • Coffin A [1]
  • Damko E [1]
  • Fang J [1]
  • Ford RC [1]
  • Fukuda Y [1]
  • Gose T [1]
  • Hite RK [1]
  • Johnson ZL [1]
  • Li Z [1]
  • Lynch J [1]
  • Myasnikov A [1]
  • O Mara Ml [1]
  • Pietz HL [1]
  • Schuetz JD [1]
  • Shaik MM [1]
  • Steffen AM [1]
  • Suga H [1]
  • Taylor MR [1]
  • Umans RA [1]
  • Walz T [1]
  • Wang Y [1]
  • Wilson KA [1]
  • Zhu J [1]
  • Zuo J [1]

Author by ORCID

  • Oldham ML [9]
  • Chen J [9]
  • Lee J [7]
  • Kalathur RC [3]
  • Madesh M [2]
  • Shi N [2]
  • Stathopulos PB [2]
  • Jiang Y [2]
  • Venkatesan M [2]
  • Fukuda Y [1]
  • Olinares PDB [1]
  • Wilson KA [1]
  • Zuo J [1]
  • O'mara ML [1]
  • Kieuvongngam V [1]
  • Schuetz JD [1]
  • Taylor MR [1]
  • Gose T [1]
  • Myasnikov A [1]
  • Baril SA [1]
  • Pietz HL [1]

Journal

  • PNAS [8]
  • BIORXIV [7]
  • ELIFE [4]
  • J BIOL CHEM [2]
  • J STRUCT BIOL [2]
  • SCI ADV [2]
  • NAT COMMUN [1]
  • NATURE [1]

Software

  • CRYOSPARC [13]
  • CTFFIND [1]
  • FREALIGN [1]
  • RELION [1]
  • SPARX, RELION, FREALIGN [1]

Microscope

  • FEI TITAN KRIOS [12]
  • FEI TALOS ARCTICA [4]
  • TFS KRIOS [2]

Electron Source

  • FIELD EMISSION GUN [18]

Film or detector model

  • GATAN K3 6K X 4K [7]
  • GATAN K3 BIOQUANTUM 6K X 4K [6]
  • GATAN K2 SUMMIT 4K X 4K [5]

EMPIAR Experiment type

  • EMDB [9]

EMPIAR Image category

  • MICROGRAPHS - MULTIFRAME [9]

External links

  • AlphaFold DB [18]
  • UniProt [18]
  • PDB [17]
  • InterPro [16]
  • Gene Ontology [15]
  • PDBe-Kb [12]
  • Pfam [11]
  • Complex Portal [9]
  • EMDB [9]
  • EMPIAR [9]
  • ChEBI [3]
  • DrugBank [2]
  • ChEMBL [1]
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Showing 1 - 10 of 27. Page 1 of 3
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EMD-73556
Download Map
3D View
the structure of ERMA complex with ATPrS and Mg
CryoEM
Release date: Sept. 2, 2026
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 9ywq
Q-score: 0.513
Similar entry percentile: 70%

Venkatesan M, Oldham ML, Shi N, Chidambaram A, Vishnu N, Madesh AK, Bentz K, Stathopulos PB, Kalathur RC, Jiang Y, Madesh M

Sci Adv (2026) 12 pp. eaef4971-eaef4971 [ DOI: doi:10.1126/sciadv.aef4971 Pubmed: 42384784 ]

EMD-73630
Download Map
3D View
the structure of ERMA Mg2 bound form
CryoEM
Release date: Sept. 2, 2026
Resolution: 2.8 Å
EM Method: Single-particle
Fitted PDBs: 9yyd
Q-score: 0.559
Similar entry percentile: 75%

Venkatesan M, Oldham ML, Shi N, Chidambaram A, Vishnu N, Madesh AK, Bentz K, Stathopulos PB, Kalathur RC, Jiang Y, Madesh M

Sci Adv (2026) 12 pp. eaef4971-eaef4971 [ DOI: doi:10.1126/sciadv.aef4971 Pubmed: 42384784 ]

EMPIAR-12000
Related EMDB
EMD-41032
Transporter associated with antigen processing (TAP) bound to the 7-mer peptide RRYSTEL
Release date: June 7, 2025
Dataset size: 5.5 TB
Experiment type: EMDB

Lee J, Oldham ML, Manon V, Chen J

bioRxiv (2023) [ DOI: 10.1101/2023.06.16.545308 ]

Image sets:
  • Unaligned multi-frame micrographs of the transporter associated with antigen processing (TAP) bound to the 7-mer peptide RRYSTEL
EMPIAR-11996
Related EMDB
EMD-41030
Transporter associated with antigen processing (TAP) bound to the 9-mer peptide QYDDAVYKL
Release date: April 15, 2025
Dataset size: 8.8 TB
Experiment type: EMDB

Lee J, Oldham ML, Manon V, Chen J

bioRxiv (2023) [ DOI: 10.1101/2023.06.16.545308 ]

Image sets:
  • Unaligned multi-frame micrographs of the transporter associated with antigen processing (TAP) bound to the 9-mer peptide QYDDAVYKL
EMPIAR-11998
Related EMDB
EMD-41028
Transporter associated with antigen processing (TAP) bound to the 9-mer peptide ILKEPVHGV
Release date: Feb. 3, 2025
Dataset size: 11.3 TB
Experiment type: EMDB

Lee J, Oldham ML, Manon V, Chen J

bioRxiv (2023) [ DOI: 10.1101/2023.06.16.545308 ]

Image sets:
  • Unaligned multi-frame micrographs of the transporter associated with antigen processing (TAP) bound to the 9-mer peptide ILKEPVHGV
EMD-46724
Download Map
3D View
Cryo-EM structure of human ABCB6 transporter in an inward-facing conformation
CryoEM
Release date: Nov. 20, 2024
Resolution: 2.9 Å
EM Method: Single-particle
Fitted PDBs: 9dbq
Q-score: 0.417
Similar entry percentile: 16%

Baril SA, Wilson KA, Shaik MM, Fukuda Y, Umans RA, Barbieri A, Lynch J, Gose T, Myasnikov A, Oldham ML, Wang Y, Zhu J, Fang J, Zuo J, Kalathur RC, Ford RC, Coffin A, Taylor MR, O'Mara ML, Schuetz JD

Nat Commun (2024) 15 pp. 9885-9885 [ Pubmed: 39557842 DOI: doi:10.1038/s41467-024-53663-x ]

EMD-42487
Download Map
3D View
Cryo-EM reconstruction of Staphylococcus aureus oleate hydratase OhyA dimer of dimers
CryoEM
Release date: Aug. 21, 2024
Resolution: 2.97 Å
EM Method: Single-particle
Fitted PDBs: 8ur8

Oldham ML, Zuhaib Qayyum M, Kalathur RC, Rock CO, Radka CD

J Struct Biol (2024) 216 pp. 108116-108116 [ Pubmed: 39151742 DOI: doi:10.1016/j.jsb.2024.108116 ]

EMD-43965
Download Map
3D View
Cryo-EM reconstruction of a Staphylococcus aureus oleate hydratase OhyA assembly of dimers bound to a liposome
CryoEM
Release date: Aug. 21, 2024
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 9axe

Oldham ML, Zuhaib Qayyum M, Kalathur RC, Rock CO, Radka CD

J Struct Biol (2024) 216 pp. 108116-108116 [ Pubmed: 39151742 DOI: doi:10.1016/j.jsb.2024.108116 ]

EMPIAR-12009
Related EMDB
EMD-41029
Transporter associated with antigen processing (TAP) bound to the 9-mer peptide RRYQKSTEL
Release date: July 19, 2024
Dataset size: 4.3 TB
Experiment type: EMDB

Lee J, Oldham ML, Manon V, Chen J

bioRxiv (2023) [ DOI: 10.1101/2023.06.16.545308 ]

Image sets:
  • Unaligned multi-frame micrographs of the transporter associated with antigen processing (TAP) bound to the 9-mer peptide RRYQKSTEL
EMPIAR-12001
Related EMDB
EMD-41033
Transporter associated with antigen processing (TAP) bound to the 14-mer peptide LPAVVGLSPGEQEY
Release date: July 18, 2024
Dataset size: 5.5 TB
Experiment type: EMDB

Lee J, Oldham ML, Manon V, Chen J

bioRxiv (2023) [ DOI: 10.1101/2023.06.16.545308 ]

Image sets:
  • Unaligned multi-frame micrographs of the transporter associated with antigen processing (TAP) bound to the 14-mer peptide LPAVVGLSPGEQEY
Sort by: Download
Showing 1 - 10 of 27. Page 1 of 3
Display:
Statistics
×

Download



Preview 10 entries View All Download file

Filter By

Current Database

  • EMDB [18]
  • EMPIAR [9]

Current status

  • REL [27]

Sample type

  • Protein [18]
  • Complex [17]
  • Ligand [3]
  • Sample [1]

Organism

  • Homo sapiens [11]
  • Synthetic construct [5]
  • Staphylococcus aureus [4]
  • Human herpesvirus 1 [2]
  • Mus musculus [1]
  • Human immunodeficiency virus 1 [1]
  • Acetivibrio thermocellus [1]
  • Acetivibrio thermocellus [1]
  • Bos taurus [1]

EM Method

  • Single-particle [18]

Resolution

  • ≥ 2Å and < 3Å [4]
  • ≥ 3Å and < 4Å [12]
  • ≥ 5Å and < 6Å [1]
  • ≥ 6Å and < 8Å [1]

Model molecular weight

  • 100-250 kDa [15]
  • 250-500 kDa [1]
  • 500-1000 kDa [1]

Release Date

  • 2026 [2]
  • 2025 [3]
  • 2024 [16]
  • 2023 [1]
  • 2021 [2]
  • 2020 [1]
  • 2017 [1]
  • 2016 [1]

Author by name

  • Oldham ML [27]
  • Chen J [20]
  • Lee J [14]
  • Manon V [14]
  • Kalathur RC [7]
  • Qayyum MZ [4]
  • Radka CD [4]
  • Rock CO [4]
  • Bentz K [2]
  • Chait BT [2]
  • Chidambaram A [2]
  • Grace CR [2]
  • Grigorieff N [2]
  • Hasdemir HS [2]
  • Jiang Y [2]
  • Kieuvongngam V [2]
  • Li Y [2]
  • Maccain WJ [2]
  • Madesh AK [2]
  • Madesh M [2]
  • Olinares PDB [2]
  • Palillo A [2]
  • Pitre A [2]
  • Rodrigues P [2]
  • Rodriguez CC [2]
  • Shi N [2]
  • Stathopulos PB [2]
  • Tajkhorshid E [2]
  • Venkatesan M [2]
  • Vishnu N [2]
  • Zuhaib Qayyum M [2]
  • Abbas A [1]
  • Barbieri A [1]
  • Baril SA [1]
  • Coffin A [1]
  • Damko E [1]
  • Fang J [1]
  • Ford RC [1]
  • Fukuda Y [1]
  • Gose T [1]
  • Hite RK [1]
  • Johnson ZL [1]
  • Li Z [1]
  • Lynch J [1]
  • Myasnikov A [1]
  • O Mara Ml [1]
  • Pietz HL [1]
  • Schuetz JD [1]
  • Shaik MM [1]
  • Steffen AM [1]
  • Suga H [1]
  • Taylor MR [1]
  • Umans RA [1]
  • Walz T [1]
  • Wang Y [1]
  • Wilson KA [1]
  • Zhu J [1]
  • Zuo J [1]

Author by ORCID

  • Oldham ML [9]
  • Chen J [9]
  • Lee J [7]
  • Kalathur RC [3]
  • Madesh M [2]
  • Shi N [2]
  • Stathopulos PB [2]
  • Jiang Y [2]
  • Venkatesan M [2]
  • Fukuda Y [1]
  • Olinares PDB [1]
  • Wilson KA [1]
  • Zuo J [1]
  • O'mara ML [1]
  • Kieuvongngam V [1]
  • Schuetz JD [1]
  • Taylor MR [1]
  • Gose T [1]
  • Myasnikov A [1]
  • Baril SA [1]
  • Pietz HL [1]

Journal

  • PNAS [8]
  • BIORXIV [7]
  • ELIFE [4]
  • J BIOL CHEM [2]
  • J STRUCT BIOL [2]
  • SCI ADV [2]
  • NAT COMMUN [1]
  • NATURE [1]

Software

  • CRYOSPARC [13]
  • CTFFIND [1]
  • FREALIGN [1]
  • RELION [1]
  • SPARX, RELION, FREALIGN [1]

Microscope

  • FEI TITAN KRIOS [12]
  • FEI TALOS ARCTICA [4]
  • TFS KRIOS [2]

Electron Source

  • FIELD EMISSION GUN [18]

Film or detector model

  • GATAN K3 6K X 4K [7]
  • GATAN K3 BIOQUANTUM 6K X 4K [6]
  • GATAN K2 SUMMIT 4K X 4K [5]

EMPIAR Experiment type

  • EMDB [9]

EMPIAR Image category

  • MICROGRAPHS - MULTIFRAME [9]

External links

  • AlphaFold DB [18]
  • UniProt [18]
  • PDB [17]
  • InterPro [16]
  • Gene Ontology [15]
  • PDBe-Kb [12]
  • Pfam [11]
  • Complex Portal [9]
  • EMDB [9]
  • EMPIAR [9]
  • ChEBI [3]
  • DrugBank [2]
  • ChEMBL [1]