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author:"Ojha AK"

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Current Database

  • EMDB [11]

Current status

  • REL [11]

Sample type

  • Complex [11]
  • Protein [8]
  • RNA [8]

Organism

  • Mycobacterium tuberculosis [6]
  • Mycolicibacterium smegmatis [4]
  • Mycolicibacterium smegmatis [2]
  • Escherichia coli [1]
  • Homo sapiens [1]

EM Method

  • Single-particle [11]

Resolution

  • ≥ 2Å and < 3Å [5]
  • ≥ 3Å and < 4Å [6]

Model molecular weight

  • 500-1000 kDa [1]
  • 1-2 MDa [2]
  • 2-5 MDa [5]

Release Date

  • 2026 [6]
  • 2023 [1]
  • 2022 [1]
  • 2018 [3]

Author by name

  • Agrawal RK [11]
  • Li Y [11]
  • Ojha AK [11]
  • Banavali NK [8]
  • Gamper HB [7]
  • Hou YM [7]
  • Majumdar S [7]
  • Manjari SR [7]
  • Sharma MR [5]
  • Koripella RK [4]
  • Derbyshire KM [3]
  • Gray TA [3]
  • Kaushal PS [3]
  • Lin Q [3]
  • Wade JT [3]
  • Yang Y [3]
  • Gray AG [2]
  • Korripella R [2]
  • Ojha A [2]
  • Corro J [1]
  • Prusa J [1]
  • Stallings CL [1]
  • Treen R [1]

Author by ORCID

  • Ojha AK [4]
  • Koripella RK [4]
  • Gray TA [3]
  • Derbyshire KM [3]
  • Banavali NK [2]
  • Treen R [1]
  • Agrawal RK [1]
  • Stallings CL [1]
  • Sharma MR [1]

Journal

  • BIORXIV [6]
  • PNAS [4]
  • MICROBIOLOGY (READING, ENGL.) [1]

Software

  • CRYOSPARC [6]
  • RELION [4]

Microscope

  • TFS KRIOS [6]
  • FEI TITAN KRIOS [5]

Electron Source

  • FIELD EMISSION GUN [11]

Film or detector model

  • GATAN K2 SUMMIT 4K X 4K [11]

External links

  • AlphaFold DB [8]
  • PDB [8]
  • PDBe-Kb [8]
  • Pfam [8]
  • UniProt [8]
  • Gene Ontology [4]
  • InterPro [4]
  • CATH [2]
  • SCOP2 [2]
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Showing 1 - 10 of 11. Page 1 of 2
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EMD-47384
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3D View
Cryo-EM structure of the ribosome-tunnel occluding hibernation factor bound to the Mycobacterium tuberculosis C- 70S ribosome carrying an E-tRNA
CryoEM
Release date: Sept. 2, 2026
Resolution: 2.7 Å
EM Method: Single-particle
Fitted PDBs: 9e16
Q-score: 0.333
Similar entry percentile: 4%

Majumdar S, Li Y, Manjari SR, Gamper HB, Hou YM, Banavali NK, Ojha AK, Agrawal RK

bioRxiv (2024) [ DOI: doi:10.1101/2024.11.25.625233 ]

EMD-47419
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3D View
Cryo-EM structure of the ribosome-tunnel occluding hibernation factor bound to the Mycobacterium tuberculosis C- 50S ribosomal subunit
CryoEM
Release date: Sept. 2, 2026
Resolution: 2.39 Å
EM Method: Single-particle
Fitted PDBs: 9e1s
Q-score: 0.333
Similar entry percentile: 2%

Majumdar S, Li Y, Manjari SR, Gamper HB, Hou YM, Banavali NK, Ojha AK, Agrawal RK

bioRxiv (2024) [ DOI: doi:10.1101/2024.11.25.625233 ]

EMD-47876
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3D View
Cryo-EM structure of the MPY and ribosome-tunnel occluding hibernation factors bound to the Mycobacterium tuberculosis C- 70S ribosome
CryoEM
Release date: Sept. 2, 2026
Resolution: 2.7 Å
EM Method: Single-particle
Fitted PDBs: 9ebb
Q-score: 0.512
Similar entry percentile: 43%

Majumdar S, Li Y, Manjari SR, Gamper HB, Hou YM, Banavali NK, Ojha AK, Agrawal RK

bioRxiv (2024) [ DOI: doi:10.1101/2024.11.25.625233 ]

EMD-47899
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3D View
Cryo-EM structure of the ribosome-tunnel occluding hibernation factor bound to the Mycobacterium tuberculosis C- 70S ribosome carrying fMet-tRNA fMet and deacylated tRNA at ribosome P and E sites.
CryoEM
Release date: Sept. 2, 2026
Resolution: 3.29 Å
EM Method: Single-particle
Fitted PDBs: 9ec3
Q-score: 0.461
Similar entry percentile: 48%

Majumdar S, Li Y, Manjari SR, Gamper HB, Hou YM, Banavali NK, Ojha AK, Agrawal RK

bioRxiv (2024) [ DOI: doi:10.1101/2024.11.25.625233 ]

EMD-47909
Download Map
3D View
Cryo-EM structure of the ribosome-tunnel occluding hibernation factor bound to Mycobacterium tuberculosis C- 70S ribosome
CryoEM
Release date: Sept. 2, 2026
Resolution: 2.78 Å
EM Method: Single-particle

Majumdar S, Li Y, Manjari SR, Gamper HB, Hou YM, Banavali NK, Ojha AK, Agrawal RK

bioRxiv (2024) [ DOI: doi:10.1101/2024.11.25.625233 ]

EMD-47910
Download Map
3D View
Cryo-EM structure of the Mycobacterium tuberculosis C- 70S ribosome bound to fMet-tRNA fMet and deacylated tRNA at ribosome P and E sites
CryoEM
Release date: Sept. 2, 2026
Resolution: 3.34 Å
EM Method: Single-particle

Majumdar S, Li Y, Manjari SR, Gamper HB, Hou YM, Banavali NK, Ojha AK, Agrawal RK

bioRxiv (2024) [ DOI: doi:10.1101/2024.11.25.625233 ]

EMD-29397
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Structure of Mycobacterium smegmatis Rsh bound to a 70S translation initiation complex
CryoEM
Release date: May 17, 2023
Resolution: 2.76 Å
EM Method: Single-particle
Fitted PDBs: 8fr8

Li Y, Majumdar S, Treen R, Sharma MR, Corro J, Gamper HB, Manjari SR, Prusa J, Banavali NK, Stallings CL, Hou YM, Agrawal RK, Ojha AK

PNAS (2023) 120 pp. e2302006120-e2302006120 [ DOI: doi:10.1073/pnas.2302006120 Pubmed: 37216503 ]

EMD-23076
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3D View
Mycobacterium smegmatis 70S-MPY complex at high resolution
CryoEM
Release date: March 2, 2022
Resolution: 3.1 Å
EM Method: Single-particle

Li Y, Sharma MR, Koripella RK, Banavali NK, Agrawal RK, Ojha AK

Microbiology (Reading, Engl.) (2021) 167 [ Pubmed: 33555244 DOI: doi:10.1099/mic.0.001035 ]

EMD-8937
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Cryo-EM Structure of Mycobacterium smegmatis C minus 50S ribosomal subunit
CryoEM
Release date: Oct. 3, 2018
Resolution: 3.42 Å
EM Method: Single-particle
Fitted PDBs: 6dzp
Q-score: 0.464
Similar entry percentile: 59%

Li Y, Sharma MR, Koripella RK, Yang Y, Kaushal PS, Lin Q, Wade JT, Gray TA, Derbyshire KM, Agrawal RK, Ojha AK

PNAS (2018) 115 pp. 8191-8196 [ DOI: doi:10.1073/pnas.1804555115 Pubmed: 30038002 ]

EMD-8932
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3D View
Cryo-EM Structure of Mycobacterium smegmatis 70S C minus ribosome 70S-MPY complex
CryoEM
Release date: Sept. 26, 2018
Resolution: 3.46 Å
EM Method: Single-particle
Fitted PDBs: 6dzi
Q-score: 0.438
Similar entry percentile: 47%

Li Y, Sharma MR, Koripella RK, Yang Y, Kaushal PS, Lin Q, Wade JT, Gray TA, Derbyshire KM, Agrawal RK, Ojha AK

PNAS (2018) 115 pp. 8191-8196 [ DOI: doi:10.1073/pnas.1804555115 Pubmed: 30038002 ]

Sort by: Download
Showing 1 - 10 of 11. Page 1 of 2
Display:
Statistics
×

Download


Preview 10 entries View All Download file

Filter By

Current Database

  • EMDB [11]

Current status

  • REL [11]

Sample type

  • Complex [11]
  • Protein [8]
  • RNA [8]

Organism

  • Mycobacterium tuberculosis [6]
  • Mycolicibacterium smegmatis [4]
  • Mycolicibacterium smegmatis [2]
  • Escherichia coli [1]
  • Homo sapiens [1]

EM Method

  • Single-particle [11]

Resolution

  • ≥ 2Å and < 3Å [5]
  • ≥ 3Å and < 4Å [6]

Model molecular weight

  • 500-1000 kDa [1]
  • 1-2 MDa [2]
  • 2-5 MDa [5]

Release Date

  • 2026 [6]
  • 2023 [1]
  • 2022 [1]
  • 2018 [3]

Author by name

  • Agrawal RK [11]
  • Li Y [11]
  • Ojha AK [11]
  • Banavali NK [8]
  • Gamper HB [7]
  • Hou YM [7]
  • Majumdar S [7]
  • Manjari SR [7]
  • Sharma MR [5]
  • Koripella RK [4]
  • Derbyshire KM [3]
  • Gray TA [3]
  • Kaushal PS [3]
  • Lin Q [3]
  • Wade JT [3]
  • Yang Y [3]
  • Gray AG [2]
  • Korripella R [2]
  • Ojha A [2]
  • Corro J [1]
  • Prusa J [1]
  • Stallings CL [1]
  • Treen R [1]

Author by ORCID

  • Ojha AK [4]
  • Koripella RK [4]
  • Gray TA [3]
  • Derbyshire KM [3]
  • Banavali NK [2]
  • Treen R [1]
  • Agrawal RK [1]
  • Stallings CL [1]
  • Sharma MR [1]

Journal

  • BIORXIV [6]
  • PNAS [4]
  • MICROBIOLOGY (READING, ENGL.) [1]

Software

  • CRYOSPARC [6]
  • RELION [4]

Microscope

  • TFS KRIOS [6]
  • FEI TITAN KRIOS [5]

Electron Source

  • FIELD EMISSION GUN [11]

Film or detector model

  • GATAN K2 SUMMIT 4K X 4K [11]

External links

  • AlphaFold DB [8]
  • PDB [8]
  • PDBe-Kb [8]
  • Pfam [8]
  • UniProt [8]
  • Gene Ontology [4]
  • InterPro [4]
  • CATH [2]
  • SCOP2 [2]