Electron Microscopy Data Bank

Edit your search query here and hit Return to execute it:

author:"Nogales E"

Filter By

Current Database

Current status

Sample type

Organism

Homo sapiens [161]
Sus scrofa [43]
Xenopus laevis [35]
Saccharomyces cerevisiae [24]
Synechocystis sp. pcc 6803 [13]
Synthetic construct [13]
Streptococcus pyogenes [9]
Drosophila melanogaster [9]
Bos taurus [9]
(no species) [8]
Saccharomyces cerevisiae [7]
Synechocystis sp. pcc 6803 [6]
Thermus thermophilus [6]
Escherichia coli [6]
Human immunodeficiency virus 1 [5]
Nicotiana benthamiana [5]
Escherichia coli [5]
Mus musculus [4]
Planctomycetes bacterium [4]
Streptococcus pyogenes [4]
Streptococcus pyogenes [3]
Biggievirus mos11 [3]
Escherichia phage lambda [3]
Dunaliella salina [3]
Xanthomonas euvesicatoria [3]
Desulfovibrio vulgaris [3]
Escherichia phage p1 [2]
Synechococcus elongatus [2]
Listeria phage lp-101 [2]
(no species) [2]
(no species) [2]
Thermotoga maritima [2]
Dunaliella tertiolecta [2]
Rhodopseudomonas palustris [2]
Platysternon megacephalum [2]
Phage #d [2]
Escherichia phage lambda [1]
Hepacivirus c [1]
(no species) [1]
Deltaproteobacteria bacterium rifcsplowo2_12_full_43_16 [1]
Deltaproteobacteria bacterium [1]
Physcomitrium patens [1]
Bacteriophage sp. [1]
Legionella pneumophila [1]
Escherichia coli [1]
Taeniopygia guttata [1]
Desulfovibrio vulgaris [1]
Salmonella enterica [1]

EM Method

Resolution

Model molecular weight

Release Date

Author by name

Nogales E [348]
Greber BJ [63]
Doudna JA [58]
Fang J [56]
Grob P [44]
Zhang R [36]
Bustamante C [31]
Canari-chumpitaz C [31]
Liu J [27]
Diaz-celis C [26]
Onoa B [26]
Ren G [26]
Requejo KI [26]
Vien M [26]
Zhang M [26]
Patel AB [23]
Sauer PV [23]
He Y [22]
Kasinath V [22]
Kellogg EH [22]
Poepsel S [22]
Luo J [21]
Alushin GM [20]
Taylor DW [20]
Florez Ariza Aj [19]
Kerfeld CA [19]
Kirst H [18]
Sutter M [18]
Ma E [17]
Tjian R [17]
Bina D [16]
Kassube SA [16]
Polivka T [16]
Ranish J [16]
Toso DB [16]
Zukin SA [16]
Cookis T [15]
Wang HW [15]
Soczek KM [14]
Liu JJ [13]
Louder RK [13]
Lafrance B [12]
Lafrance BJ [12]
Dominguez-martin MA [11]
Inouye C [11]
Lander GC [11]
Sauer P [11]
Toso D [11]
Cianfrocco MA [10]
Florez Ariza A [10]
Ivanov I [10]
Lydecker A [10]
Surrey T [10]
Yan C [10]
Brown A [9]
Dimaio F [9]
Downing KH [9]
Iwai M [9]
Kaeser B [9]
Kornfeld JE [9]
Moore CM [9]
Baney KLM [8]
Eshun-wilson L [8]
Iavarone AT [8]
Jiang F [8]
Khera R [8]
Liu HW [8]
Lue NZ [8]
Merchant SS [8]
Oakes BL [8]
Orlova N [8]
Perez-bertoldi JM [8]
Roostalu J [8]
Spinner HB [8]
Tan D [8]
Westermann S [8]
Berger JM [7]
Collins K [7]
Doudna J [7]
Goodrich JA [7]
Grunberg S [7]
Hahn S [7]
Howes SC [7]
Knott GJ [7]
Koh AF [7]
Kotecha A [7]
Liu Y [7]
Marunde MR [7]
Popova IK [7]
Querol-audi J [7]
Taatjes DJ [7]
Thawani A [7]
Tsuchida CA [7]
Yakovchuk P [7]
Yang Z [7]
Yildiz A [7]
Zhao Y [7]
Zhou K [7]
Bondanza M [6]
Botchan MR [6]

Author by ORCID

Nogales E [148]
Greber BJ [59]
Grob P [35]
Vien M [26]
Ren G [26]
Patel AB [23]
Luo J [21]
Alushin GM [20]
Taylor DW [20]
Sutter M [18]
Kirst H [18]
Kerfeld CA [18]
Poepsel S [17]
Sauer PV [16]
Polivka T [16]
Bina D [16]
Florez Ariza Aj [15]
Doudna JA [13]
Louder RK [13]
Kassube SA [13]
Lafrance B [12]
Sauer P [11]
Lander GC [11]
Cianfrocco MA [10]
Ivanov I [10]
Brown A [9]
Moore CM [9]
Zukin SA [9]
Westermann S [8]
Eshun-wilson L [8]
Roostalu J [8]
Lafrance BJ [8]
Hahn S [7]
Grunberg S [7]
Knott GJ [7]
Liu Y [7]
Querol-audi J [7]
Soczek KM [7]
Thawani A [7]
Taatjes DJ [7]
Yildiz A [7]
Bondanza M [6]
Koh AF [6]
Nguyen THD [6]
Mccollum CO [6]
Dominguez Martin Ma [6]
Mennucci B [6]
Kotecha A [6]
Liu JJ [6]
Cupellini L [6]
Zhang R [6]
Shigematsu H [6]
Normanno D [6]
Henkin G [6]
Cattoglio C [5]
Howes SC [5]
Rice LM [5]
Lin Z [5]
Cote J [5]
Ranish JA [5]
Niyogi KK [5]
Mameri A [5]
Baker D [5]
Sternberg SH [5]
Wells JA [5]
Peukes J [5]
Schekman R [5]
Liu F [5]
Banerjea A [5]
Yang Z [5]
Lambert JP [5]
Iwai M [5]
Humbert J [5]
Al-shayeb B [5]
Chacon P [5]
Downing KH [5]
Lue NZ [5]
Hochstrasser ML [5]
Fradet-turcotte A [5]
Ngo W [5]
Lopez-blanco JR [5]
Stukenberg PT [5]
Dimaio F [5]
Leschziner AE [5]
Sudarshan D [5]
Galloy M [5]
Kellogg EH [5]
Matson D [5]
Stickels RR [5]
Perez-bertoldi JM [5]
Herbst DA [5]
Sun C [5]
Lachance C [5]
Xue ZW [5]
Ferro LS [4]
Cofsky JC [4]
Golcuk M [4]
Chen XW [4]
Farrell DP [4]
Faini M [4]

Journal

Software

RELION [70]
FREALIGN [41]
CRYOSPARC [29]
GCTF [18]
SPIDER [14]
EMAN2, SPARX [13]
CTFFIND [12]
EMAN1, FREALIGN [9]
APPION [8]
CHIMERA [7]
EMAN [7]
EMAN2 [7]
EMAN2, FREALIGN [7]
EMAN2 SPARX [5]
EMAN2/SPARX [5]
SPIDER, IMAGIC [5]
SITUS [4]
SPARX, EMAN2, FREALIGN [4]
CTFFIND4, RELION, BSOFT [3]
EMAN2/SPARX, MULTI-MODEL [3]
IMAGIC, SPIDER [3]
IMOD [3]
ROSETTA [3]
ML3D [2]
PHENIX [2]
SUBTOM [2]
APPION, LEGINON, SPIDER, IMAGIC, EMAN2, SPARX [1]
CTFFIND3, RELION, BSOFT [1]
EMAN, SPIDER [1]
EMAN2/SPARX, FREALIGN [1]
MDFF METHOD [1]
MRC AND HOME-MADE PROGRAMS [1]
MRC AND HOME-MADE SOFTWARE [1]
PHOELIX AND MRC [1]
RELION2.1 [1]
SPIDER, EMAN, EMAN2, IMAGIC, RELION [1]
SPIDER, FREALIGN [1]
SUPRIM, MRC [1]

Microscope

Electron Source

Film or detector model

EMPIAR Experiment type

EMPIAR Image category

External links

Sort by: Download

Showing 1 - 10 of 354. Page 1 of 36

Display:

Statistics

Download

Select database:

EMDB [338]
EMPIAR [16]

Format:

Select the script type:

Shell (Unix-based) Batch (Windows-based)

Preview first 10

Download

EMD-46689

Download Map

3D View

Tau-Microtubule structure in the presence of ATP

Release date: July 30, 2025
Resolution: 2.94 Å
EM Method: Helical reconstruction
Fitted PDBs: 9da8
Q-score: 0.531

Grycova L, Humhalova T, Perez-Bertoldi JM, Peukes J, Hlubuckova D, Khuntsariya D, Krishnan A, Zdobinsky T, Dodokova A, Diez S, Janke C, Barvik I, Libusova L, Nogales E, Braun M, Lansky Z

To Be Published

EMD-46893

Download Map

3D View

Cryo-EM structure of HURP bound to a microtubule

Release date: July 16, 2025
Resolution: 3.1 Å
EM Method: Helical reconstruction
Fitted PDBs: 9dhz
Q-score: 0.532

Perez-Bertoldi JM, Zhao Y, Thawani A, Yildiz A, Nogales E

Nat Commun (2024) 15 pp. 9687-9687 [ Pubmed: 39516196 DOI: doi:10.1038/s41467-024-53691-7 ]

EMD-46894

Download Map

3D View

Cryo-EM structure of Kif18A bound to a microtubule

Release date: July 16, 2025
Resolution: 3.1 Å
EM Method: Helical reconstruction
Fitted PDBs: 9di0
Q-score: 0.542

Perez-Bertoldi JM, Zhao Y, Thawani A, Yildiz A, Nogales E

Nat Commun (2024) 15 pp. 9687-9687 [ Pubmed: 39516196 DOI: doi:10.1038/s41467-024-53691-7 ]

EMD-47285

Download Map

3D View

Model of tubulin dimers used for determining the dimer rise in a taxol-stabilized microtubule

Release date: July 16, 2025
Resolution: 3.3 Å
EM Method: Helical reconstruction
Fitted PDBs: 9dxe
Q-score: 0.512

Perez-Bertoldi JM, Zhao Y, Thawani A, Yildiz A, Nogales E

Nat Commun (2024) 15 pp. 9687-9687 [ Pubmed: 39516196 DOI: doi:10.1038/s41467-024-53691-7 ]

EMPIAR-12653

Release date: July 3, 2025
Dataset size: 1.0 GB
Experiment type: EMDB

Liu HW, Khera R, Grob P, Gallaher SD, Purvine SO, Nicora CD, Lipton MS, Niyogi KK, Nogales E, Iwai M, Merchant SS

bioRxiv (2024) [ DOI: 10.1101/2024.12.11.624522 ]

Image sets:

Micrographs of D. tertiolecta PSI-LHCI supercomplexes from Fe-starved cells

EMPIAR-12654

Release date: July 3, 2025
Dataset size: 262.0 MB
Experiment type: EMDB

Liu HW, Khera R, Grob P, Gallaher SD, Purvine SO, Nicora CD, Lipton MS, Niyogi KK, Nogales E, Iwai M, Merchant SS

bioRxiv (2024) [ DOI: 10.1101/2024.12.11.624522 ]

Image sets:

Micrographs of D. salina PSI-LHCI supercomplexes from Fe-starved cells

EMPIAR-12655

Release date: July 3, 2025
Dataset size: 209.0 MB
Experiment type: EMDB

Liu HW, Khera R, Grob P, Gallaher SD, Purvine SO, Nicora CD, Lipton MS, Niyogi KK, Nogales E, Iwai M, Merchant SS

bioRxiv (2024) [ DOI: 10.1101/2024.12.11.624522 ]

Image sets:

Micrographs of D. tertiolecta PSI-LHCI supercomplexes from Fe-replete cells

EMPIAR-12656

Related EMDB

Dunaliella salina PSI-LHCI supercomplex

Release date: July 3, 2025
Dataset size: 1.5 GB
Experiment type: EMDB

Liu HW, Khera R, Grob P, Gallaher SD, Purvine SO, Nicora CD, Lipton MS, Niyogi KK, Nogales E, Iwai M, Merchant SS

bioRxiv (2024) [ DOI: 10.1101/2024.12.11.624522 ]

Image sets:

Micrographs of D. salina PSI-LHCI supercomplexes from Fe-replete cells

EMD-48262

Composite map

Download Map

3D View

Raw data

Dunaliella salina PSI-LHCI-TIDI1 supercomplex

Release date: June 25, 2025
Resolution: 3.0 Å
EM Method: Single-particle
Fitted PDBs: 9mgw
Q-score: 0.418

Liu HW, Khera R, Grob P, Gallaher SD, Purvine SO, Nicora CD, Lipton MS, Niyogi KK, Nogales E, Iwai M, Merchant SS

PNAS (2025) 122 pp. e2500621122-e2500621122 [ DOI: doi:10.1073/pnas.2500621122 Pubmed: 40523173 ]

EMD-48264

Download Map

3D View

Dunaliella tertiolecta PSI-LHCI-TIDI1 supercomplex

Release date: June 25, 2025
Resolution: 2.8 Å
EM Method: Single-particle
Fitted PDBs: 9mgz
Q-score: 0.42

Liu HW, Khera R, Grob P, Gallaher SD, Purvine SO, Nicora CD, Lipton MS, Niyogi KK, Nogales E, Iwai M, Merchant SS

PNAS (2025) 122 pp. e2500621122-e2500621122 [ DOI: doi:10.1073/pnas.2500621122 Pubmed: 40523173 ]

Sort by: Download

Showing 1 - 10 of 354. Page 1 of 36

Display:

Statistics

Download

Select database:

EMDB [338]
EMPIAR [16]

Format:

Select the script type:

Shell (Unix-based) Batch (Windows-based)

Preview first 10

Download

Filter By

Current Database

Current status

Sample type

Organism

Homo sapiens [161]
Sus scrofa [43]
Xenopus laevis [35]
Saccharomyces cerevisiae [24]
Synechocystis sp. pcc 6803 [13]
Synthetic construct [13]
Streptococcus pyogenes [9]
Drosophila melanogaster [9]
Bos taurus [9]
(no species) [8]
Saccharomyces cerevisiae [7]
Synechocystis sp. pcc 6803 [6]
Thermus thermophilus [6]
Escherichia coli [6]
Human immunodeficiency virus 1 [5]
Nicotiana benthamiana [5]
Escherichia coli [5]
Mus musculus [4]
Planctomycetes bacterium [4]
Streptococcus pyogenes [4]
Streptococcus pyogenes [3]
Biggievirus mos11 [3]
Escherichia phage lambda [3]
Dunaliella salina [3]
Xanthomonas euvesicatoria [3]
Desulfovibrio vulgaris [3]
Escherichia phage p1 [2]
Synechococcus elongatus [2]
Listeria phage lp-101 [2]
(no species) [2]
(no species) [2]
Thermotoga maritima [2]
Dunaliella tertiolecta [2]
Rhodopseudomonas palustris [2]
Platysternon megacephalum [2]
Phage #d [2]
Escherichia phage lambda [1]
Hepacivirus c [1]
(no species) [1]
Deltaproteobacteria bacterium rifcsplowo2_12_full_43_16 [1]
Deltaproteobacteria bacterium [1]
Physcomitrium patens [1]
Bacteriophage sp. [1]
Legionella pneumophila [1]
Escherichia coli [1]
Taeniopygia guttata [1]
Desulfovibrio vulgaris [1]
Salmonella enterica [1]

EM Method

Resolution

Model molecular weight

Release Date

Author by name

Nogales E [348]
Greber BJ [63]
Doudna JA [58]
Fang J [56]
Grob P [44]
Zhang R [36]
Bustamante C [31]
Canari-chumpitaz C [31]
Liu J [27]
Diaz-celis C [26]
Onoa B [26]
Ren G [26]
Requejo KI [26]
Vien M [26]
Zhang M [26]
Patel AB [23]
Sauer PV [23]
He Y [22]
Kasinath V [22]
Kellogg EH [22]
Poepsel S [22]
Luo J [21]
Alushin GM [20]
Taylor DW [20]
Florez Ariza Aj [19]
Kerfeld CA [19]
Kirst H [18]
Sutter M [18]
Ma E [17]
Tjian R [17]
Bina D [16]
Kassube SA [16]
Polivka T [16]
Ranish J [16]
Toso DB [16]
Zukin SA [16]
Cookis T [15]
Wang HW [15]
Soczek KM [14]
Liu JJ [13]
Louder RK [13]
Lafrance B [12]
Lafrance BJ [12]
Dominguez-martin MA [11]
Inouye C [11]
Lander GC [11]
Sauer P [11]
Toso D [11]
Cianfrocco MA [10]
Florez Ariza A [10]
Ivanov I [10]
Lydecker A [10]
Surrey T [10]
Yan C [10]
Brown A [9]
Dimaio F [9]
Downing KH [9]
Iwai M [9]
Kaeser B [9]
Kornfeld JE [9]
Moore CM [9]
Baney KLM [8]
Eshun-wilson L [8]
Iavarone AT [8]
Jiang F [8]
Khera R [8]
Liu HW [8]
Lue NZ [8]
Merchant SS [8]
Oakes BL [8]
Orlova N [8]
Perez-bertoldi JM [8]
Roostalu J [8]
Spinner HB [8]
Tan D [8]
Westermann S [8]
Berger JM [7]
Collins K [7]
Doudna J [7]
Goodrich JA [7]
Grunberg S [7]
Hahn S [7]
Howes SC [7]
Knott GJ [7]
Koh AF [7]
Kotecha A [7]
Liu Y [7]
Marunde MR [7]
Popova IK [7]
Querol-audi J [7]
Taatjes DJ [7]
Thawani A [7]
Tsuchida CA [7]
Yakovchuk P [7]
Yang Z [7]
Yildiz A [7]
Zhao Y [7]
Zhou K [7]
Bondanza M [6]
Botchan MR [6]

Author by ORCID

Nogales E [148]
Greber BJ [59]
Grob P [35]
Vien M [26]
Ren G [26]
Patel AB [23]
Luo J [21]
Alushin GM [20]
Taylor DW [20]
Sutter M [18]
Kirst H [18]
Kerfeld CA [18]
Poepsel S [17]
Sauer PV [16]
Polivka T [16]
Bina D [16]
Florez Ariza Aj [15]
Doudna JA [13]
Louder RK [13]
Kassube SA [13]
Lafrance B [12]
Sauer P [11]
Lander GC [11]
Cianfrocco MA [10]
Ivanov I [10]
Brown A [9]
Moore CM [9]
Zukin SA [9]
Westermann S [8]
Eshun-wilson L [8]
Roostalu J [8]
Lafrance BJ [8]
Hahn S [7]
Grunberg S [7]
Knott GJ [7]
Liu Y [7]
Querol-audi J [7]
Soczek KM [7]
Thawani A [7]
Taatjes DJ [7]
Yildiz A [7]
Bondanza M [6]
Koh AF [6]
Nguyen THD [6]
Mccollum CO [6]
Dominguez Martin Ma [6]
Mennucci B [6]
Kotecha A [6]
Liu JJ [6]
Cupellini L [6]
Zhang R [6]
Shigematsu H [6]
Normanno D [6]
Henkin G [6]
Cattoglio C [5]
Howes SC [5]
Rice LM [5]
Lin Z [5]
Cote J [5]
Ranish JA [5]
Niyogi KK [5]
Mameri A [5]
Baker D [5]
Sternberg SH [5]
Wells JA [5]
Peukes J [5]
Schekman R [5]
Liu F [5]
Banerjea A [5]
Yang Z [5]
Lambert JP [5]
Iwai M [5]
Humbert J [5]
Al-shayeb B [5]
Chacon P [5]
Downing KH [5]
Lue NZ [5]
Hochstrasser ML [5]
Fradet-turcotte A [5]
Ngo W [5]
Lopez-blanco JR [5]
Stukenberg PT [5]
Dimaio F [5]
Leschziner AE [5]
Sudarshan D [5]
Galloy M [5]
Kellogg EH [5]
Matson D [5]
Stickels RR [5]
Perez-bertoldi JM [5]
Herbst DA [5]
Sun C [5]
Lachance C [5]
Xue ZW [5]
Ferro LS [4]
Cofsky JC [4]
Golcuk M [4]
Chen XW [4]
Farrell DP [4]
Faini M [4]

Journal

Software

RELION [70]
FREALIGN [41]
CRYOSPARC [29]
GCTF [18]
SPIDER [14]
EMAN2, SPARX [13]
CTFFIND [12]
EMAN1, FREALIGN [9]
APPION [8]
CHIMERA [7]
EMAN [7]
EMAN2 [7]
EMAN2, FREALIGN [7]
EMAN2 SPARX [5]
EMAN2/SPARX [5]
SPIDER, IMAGIC [5]
SITUS [4]
SPARX, EMAN2, FREALIGN [4]
CTFFIND4, RELION, BSOFT [3]
EMAN2/SPARX, MULTI-MODEL [3]
IMAGIC, SPIDER [3]
IMOD [3]
ROSETTA [3]
ML3D [2]
PHENIX [2]
SUBTOM [2]
APPION, LEGINON, SPIDER, IMAGIC, EMAN2, SPARX [1]
CTFFIND3, RELION, BSOFT [1]
EMAN, SPIDER [1]
EMAN2/SPARX, FREALIGN [1]
MDFF METHOD [1]
MRC AND HOME-MADE PROGRAMS [1]
MRC AND HOME-MADE SOFTWARE [1]
PHOELIX AND MRC [1]
RELION2.1 [1]
SPIDER, EMAN, EMAN2, IMAGIC, RELION [1]
SPIDER, FREALIGN [1]
SUPRIM, MRC [1]

Microscope

Electron Source

Film or detector model

EMPIAR Experiment type

EMPIAR Image category

External links