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author:"Nicastro D"

Filter By

Current Database

  • EMDB [90]
  • EMPIAR [2]

Current status

  • REL [92]

Sample type

  • Cellular component [41]
  • Cell [30]
  • Complex [18]
  • Virus [8]
  • Sample [4]
  • Ligand [3]
  • Protein [3]
  • Other [1]

Organism

  • Chlamydomonas reinhardtii [26]
  • Enterovirus c [8]
  • Tetrahymena thermophila [8]
  • Strongylocentrotus purpuratus [7]
  • Neospora caninum [6]
  • Saccharomyces cerevisiae [6]
  • Candidatus thioglobus autotrophicus [5]
  • (no species) [5]
  • Mus musculus [3]
  • Rotavirus a [3]
  • Anguilla rostrata [3]
  • Salpingoeca rosetta (strain atcc 50818 / bsb-021) [3]
  • Homo sapiens [3]
  • Candidatus pseudothioglobus singularis [2]
  • Tetrahymena thermophila [1]
  • (no species) [1]

EM Method

  • Subtomogram averaging [54]
  • Tomography [32]
  • Single-particle [4]

Resolution

  • ≥ 3Å and < 4Å [2]
  • ≥ 4Å and < 5Å [1]
  • ≥ 6Å and < 8Å [1]
  • ≥ 12Å and < 16Å [1]
  • ≥ 16Å and < 20Å [3]
  • ≥ 20Å and < 30Å [25]
  • ≥ 30Å [31]

Model molecular weight

  • 250-500 kDa [2]
  • 1-2 MDa [3]

Release Date

  • 2025 [3]
  • 2023 [6]
  • 2022 [12]
  • 2021 [11]
  • 2020 [3]
  • 2019 [34]
  • 2018 [19]
  • 2014 [3]
  • 2012 [1]

Author by name

  • Nicastro D [92]
  • Fu G [22]
  • Gui L [21]
  • Lin J [21]
  • Phan N [19]
  • Song K [16]
  • Reetz E [15]
  • Zhao Y [13]
  • Hou Y [11]
  • Witman GB [11]
  • Zhao L [11]
  • Zhao XW [11]
  • Cai K [10]
  • Smith EF [10]
  • Porter ME [9]
  • Stoddard D [9]
  • Zhao X [9]
  • Bullitt E [8]
  • Chang D [8]
  • Forrester I [8]
  • Ingalls AE [8]
  • Jackson WT [8]
  • Lundeen RA [8]
  • Morris RM [8]
  • Raja K [8]
  • Rossignol ED [8]
  • Shang Z [8]
  • Winbigler H [8]
  • Yang JE [8]
  • Zaia J [8]
  • Dymek E [7]
  • Bayless BA [6]
  • Henne WM [6]
  • Kovalenko A [6]
  • O Shaughnessy Wj [6]
  • Reese ML [6]
  • Rogers S [6]
  • Shah V [6]
  • Winey M [6]
  • Augspurger K [5]
  • Bower R [5]
  • Dai A [5]
  • Grzemska M [5]
  • Joachimiak E [5]
  • Ni T [5]
  • Sakizadeh J [5]
  • Tritschler D [5]
  • Urbanska P [5]
  • Wang Q [5]
  • Wloga D [5]
  • Yan S [5]
  • Baroud C [4]
  • Baroud CN [4]
  • Bayless B [4]
  • Cheng X [4]
  • Dave D [4]
  • Dupuis-williams P [4]
  • Gaertig J [4]
  • Louka P [4]
  • Surwayanshi S [4]
  • Suryawanshi S [4]
  • Tomasi R [4]
  • Tomasi RF [4]
  • Berciu C [3]
  • Chung JJ [3]
  • Davies KM [3]
  • Dymek EE [3]
  • Hable WE [3]
  • Harrison SC [3]
  • Herrmann T [3]
  • Huang X [3]
  • Hwang J [3]
  • Hwang JY [3]
  • Jenni S [3]
  • Knowles MR [3]
  • Leigh MW [3]
  • Lishko PV [3]
  • Oliveira K [3]
  • Ostrowski LE [3]
  • Pinskey JM [3]
  • Porter M [3]
  • Salgado EN [3]
  • Scarbrough C [3]
  • Schrad JR [3]
  • Shah NB [3]
  • Smith MC [3]
  • Tayar AM [3]
  • Torres R [3]
  • Wang H [3]
  • Wang TE [3]
  • Wennemuth G [3]
  • Wiesehoefer C [3]
  • Wirschell M [3]
  • Yin W [3]
  • Zariwala MA [3]
  • Agard DA [2]
  • Anderson L [2]
  • Daniels LA [2]
  • Ebmeier CC [2]
  • Fabritius AS [2]

Author by ORCID

  • Nicastro D [61]
  • Gui L [15]
  • Fu G [15]
  • Lin J [11]
  • Witman GB [11]
  • Cai K [10]
  • Yang JE [8]
  • Lundeen RA [8]
  • Lin J [8]
  • Ingalls AE [8]
  • Hou Y [7]
  • Reese ML [6]
  • O'shaughnessy WJ [6]
  • Wloga D [5]
  • Grzemska M [5]
  • Augspurger K [5]
  • Joachimiak E [5]
  • Nicastro D [5]
  • Zhao Y [4]
  • Louka P [4]
  • Phan N [4]
  • Nicastro D [4]
  • Dupuis-williams P [4]
  • Cheng X [4]
  • Jenni S [3]
  • Harrison SC [3]
  • Chung JJ [3]
  • Smith EF [3]
  • Davies KM [3]
  • Porter ME [3]
  • Hwang JY [3]
  • Schrad JR [3]
  • Wiesehoefer C [3]
  • Wang H [3]
  • Fu G [3]
  • Lishko PV [3]
  • Wennemuth G [3]
  • Spietz RL [2]
  • Okada K [2]
  • Heuser T [2]
  • Morris RM [2]
  • Li S [2]
  • Agard DA [2]
  • Smith MC [2]
  • Pinskey JM [1]
  • Yin W [1]
  • Schwartz CL [1]
  • Grigorieff N [1]
  • Krell J [1]
  • Smith BW [1]
  • Nicastro D [1]

Journal

  • MOL BIOL CELL [19]
  • NAT COMMUN [10]
  • TO BE PUBLISHED [10]
  • SCI REP [8]
  • J CELL BIOL [7]
  • MBIO [6]
  • PNAS [6]
  • SCIENCE [6]
  • J CELL SCI [4]
  • ELIFE [3]
  • FASEB J [3]
  • NATURE [3]
  • ENVIRON MICROBIOL [2]
  • NAT CELL BIOL [2]
  • APPL ENVIRON MICROBIOL [1]
  • BIORXIV [1]
  • CYTOSKELETON [1]
  • NAT METHODS [1]

Software

  • IMOD [38]
  • MATLAB [19]
  • PEET [13]
  • ETOMO [12]
  • CISTEM [3]
  • IMOD, PEET [2]
  • XMIPP [2]
  • 3DMOD [1]
  • TOMOCTF [1]

Microscope

  • FEI TITAN KRIOS [48]
  • FEI TECNAI F30 [31]
  • FEI TECNAI F20 [7]
  • FEI POLARA 300 [3]
  • JEOL 2200FS [1]

Electron Source

  • FIELD EMISSION GUN [90]

Film or detector model

  • GATAN K2 SUMMIT 4K X 4K [18]
  • GATAN ULTRASCAN 1000 2K X 2K [18]
  • GATAN K3 6K X 4K [14]
  • GATAN K3 BIOQUANTUM 6K X 4K [12]
  • DIRECT ELECTRON DE-16 4K X 4K [8]
  • TVIPS TEMCAM-F416 4K X 4K [7]
  • GATAN ORIUS SC200 2K X 2K [5]
  • GATAN MULTISCAN [4]
  • GENERIC GATAN 2K X 2K [3]
  • DIRECT ELECTRON DE-20 5K X 3K [1]

EMPIAR Experiment type

  • EMDB [2]

EMPIAR Image category

  • TILT SERIES [2]

External links

  • PDB [5]
  • EMPIAR [4]
  • ChEBI [3]
  • ChEMBL [3]
  • DrugBank [3]
  • Gene Ontology [3]
  • InterPro [3]
  • PDBe-Kb [3]
  • Pfam [3]
  • UniProt [3]
  • EMDB [2]
Sort by: Download
Showing 1 - 10 of 92. Page 1 of 10
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EMD-45870
Download Map
3D View
Ciliary 96-nm repeat unit from active and EHNA-inhibited sperm cells of the American eel Anguilla rostrata
Release date: March 5, 2025
Resolution: 20.0 Å
EM Method: Subtomogram averaging

Schrad JR, Fu G, Hable WE, Tayar AM, Oliveira K, Nicastro D

Mol Biol Cell (2025) 36 pp. ar15-ar15 [ DOI: doi:10.1091/mbc.E24-08-0351 Pubmed: 39661459 ]

EMD-45871
Download Map
3D View
Ciliary 96-nm repeat unit from active sperm cells of the American eel Anguilla rostrata
Release date: March 5, 2025
Resolution: 23.0 Å
EM Method: Subtomogram averaging

Schrad JR, Fu G, Hable WE, Tayar AM, Oliveira K, Nicastro D

Mol Biol Cell (2025) 36 pp. ar15-ar15 [ DOI: doi:10.1091/mbc.E24-08-0351 Pubmed: 39661459 ]

EMD-45872
Download Map
3D View
Ciliary 96-nm repeat unit from EHNA-inhibited sperm cells of the American eel Anguilla rostrata
Release date: March 5, 2025
Resolution: 22.0 Å
EM Method: Subtomogram averaging

Schrad JR, Fu G, Hable WE, Tayar AM, Oliveira K, Nicastro D

Mol Biol Cell (2025) 36 pp. ar15-ar15 [ DOI: doi:10.1091/mbc.E24-08-0351 Pubmed: 39661459 ]

EMD-26873
Download Map
3D View
Subtomogram averages of the 8-nm repeats of the conoid fibers from the cryo-FIB milled Neospora caninum
Release date: April 12, 2023
Resolution: 28.0 Å
EM Method: Subtomogram averaging

Gui L, O'Shaughnessy WJ, Cai K, Reetz E, Reese ML, Nicastro D

Nat Commun (2023) 14 pp. 1775-1775 [ Pubmed: 36997532 DOI: doi:10.1038/s41467-023-37327-w ]

EMD-28231
Download Map
3D View
Subtomogram averages of the pre-conoid ring P1 and P2 from the cryo-FIB milled Neospora caninum
Release date: April 12, 2023
Resolution: 49.0 Å
EM Method: Subtomogram averaging

Gui L, O'Shaughnessy WJ, Cai K, Reetz E, Reese ML, Nicastro D

Nat Commun (2023) 14 pp. 1775-1775 [ Pubmed: 36997532 DOI: doi:10.1038/s41467-023-37327-w ]

EMD-28234
Download Map
3D View
Subtomogram averages of the pre-conoid ring P3 from the cryo-FIB milled Neospora caninum
Release date: April 12, 2023
Resolution: 47.0 Å
EM Method: Subtomogram averaging

Gui L, O'Shaughnessy WJ, Cai K, Reetz E, Reese ML, Nicastro D

Nat Commun (2023) 14 pp. 1775-1775 [ Pubmed: 36997532 DOI: doi:10.1038/s41467-023-37327-w ]

EMD-28246
Download Map
3D View
Composite map of the pre-conoid ring P1, P2 and P3 from the cryo-FIB milled Neospora caninum
Release date: April 12, 2023
Resolution: 49.0 Å
EM Method: Subtomogram averaging

Gui L, O'Shaughnessy WJ, Cai K, Reetz E, Reese ML, Nicastro D

Nat Commun (2023) 14 pp. 1775-1775 [ Pubmed: 36997532 DOI: doi:10.1038/s41467-023-37327-w ]

EMD-28247
Download Map
3D View
Subtomogram averages of the 8-nm repeats of the conoid fibers in the protruded states from the cryo-FIB milled Neospora caninum
Release date: April 12, 2023
Resolution: 30.0 Å
EM Method: Subtomogram averaging

Gui L, O'Shaughnessy WJ, Cai K, Reetz E, Reese ML, Nicastro D

Nat Commun (2023) 14 pp. 1775-1775 [ Pubmed: 36997532 DOI: doi:10.1038/s41467-023-37327-w ]

EMD-28249
Download Map
3D View
Subtomogram averages of the 8-nm repeats of the conoid fibers in the retracted states from the cryo-FIB milled Neospora caninum
Release date: April 12, 2023
Resolution: 32.0 Å
EM Method: Subtomogram averaging

Gui L, O'Shaughnessy WJ, Cai K, Reetz E, Reese ML, Nicastro D

Nat Commun (2023) 14 pp. 1775-1775 [ Pubmed: 36997532 DOI: doi:10.1038/s41467-023-37327-w ]

EMD-26204
Download Map
3D View
Ciliary 96-nm repeat unit from Salpingoeca rosetta choanoflagellate , generated via cryo-electron tomography and subtomogram averaging
Release date: Nov. 23, 2022
Resolution: 22.0 Å
EM Method: Tomography

Pinskey JM, Nicastro D

eLife (2022) [ ]

Sort by: Download
Showing 1 - 10 of 92. Page 1 of 10
Display:
Statistics
×

Download












































Preview first 10
Download

Filter By

Current Database

  • EMDB [90]
  • EMPIAR [2]

Current status

  • REL [92]

Sample type

  • Cellular component [41]
  • Cell [30]
  • Complex [18]
  • Virus [8]
  • Sample [4]
  • Ligand [3]
  • Protein [3]
  • Other [1]

Organism

  • Chlamydomonas reinhardtii [26]
  • Enterovirus c [8]
  • Tetrahymena thermophila [8]
  • Strongylocentrotus purpuratus [7]
  • Neospora caninum [6]
  • Saccharomyces cerevisiae [6]
  • Candidatus thioglobus autotrophicus [5]
  • (no species) [5]
  • Mus musculus [3]
  • Rotavirus a [3]
  • Anguilla rostrata [3]
  • Salpingoeca rosetta (strain atcc 50818 / bsb-021) [3]
  • Homo sapiens [3]
  • Candidatus pseudothioglobus singularis [2]
  • Tetrahymena thermophila [1]
  • (no species) [1]

EM Method

  • Subtomogram averaging [54]
  • Tomography [32]
  • Single-particle [4]

Resolution

  • ≥ 3Å and < 4Å [2]
  • ≥ 4Å and < 5Å [1]
  • ≥ 6Å and < 8Å [1]
  • ≥ 12Å and < 16Å [1]
  • ≥ 16Å and < 20Å [3]
  • ≥ 20Å and < 30Å [25]
  • ≥ 30Å [31]

Model molecular weight

  • 250-500 kDa [2]
  • 1-2 MDa [3]

Release Date

  • 2025 [3]
  • 2023 [6]
  • 2022 [12]
  • 2021 [11]
  • 2020 [3]
  • 2019 [34]
  • 2018 [19]
  • 2014 [3]
  • 2012 [1]

Author by name

  • Nicastro D [92]
  • Fu G [22]
  • Gui L [21]
  • Lin J [21]
  • Phan N [19]
  • Song K [16]
  • Reetz E [15]
  • Zhao Y [13]
  • Hou Y [11]
  • Witman GB [11]
  • Zhao L [11]
  • Zhao XW [11]
  • Cai K [10]
  • Smith EF [10]
  • Porter ME [9]
  • Stoddard D [9]
  • Zhao X [9]
  • Bullitt E [8]
  • Chang D [8]
  • Forrester I [8]
  • Ingalls AE [8]
  • Jackson WT [8]
  • Lundeen RA [8]
  • Morris RM [8]
  • Raja K [8]
  • Rossignol ED [8]
  • Shang Z [8]
  • Winbigler H [8]
  • Yang JE [8]
  • Zaia J [8]
  • Dymek E [7]
  • Bayless BA [6]
  • Henne WM [6]
  • Kovalenko A [6]
  • O Shaughnessy Wj [6]
  • Reese ML [6]
  • Rogers S [6]
  • Shah V [6]
  • Winey M [6]
  • Augspurger K [5]
  • Bower R [5]
  • Dai A [5]
  • Grzemska M [5]
  • Joachimiak E [5]
  • Ni T [5]
  • Sakizadeh J [5]
  • Tritschler D [5]
  • Urbanska P [5]
  • Wang Q [5]
  • Wloga D [5]
  • Yan S [5]
  • Baroud C [4]
  • Baroud CN [4]
  • Bayless B [4]
  • Cheng X [4]
  • Dave D [4]
  • Dupuis-williams P [4]
  • Gaertig J [4]
  • Louka P [4]
  • Surwayanshi S [4]
  • Suryawanshi S [4]
  • Tomasi R [4]
  • Tomasi RF [4]
  • Berciu C [3]
  • Chung JJ [3]
  • Davies KM [3]
  • Dymek EE [3]
  • Hable WE [3]
  • Harrison SC [3]
  • Herrmann T [3]
  • Huang X [3]
  • Hwang J [3]
  • Hwang JY [3]
  • Jenni S [3]
  • Knowles MR [3]
  • Leigh MW [3]
  • Lishko PV [3]
  • Oliveira K [3]
  • Ostrowski LE [3]
  • Pinskey JM [3]
  • Porter M [3]
  • Salgado EN [3]
  • Scarbrough C [3]
  • Schrad JR [3]
  • Shah NB [3]
  • Smith MC [3]
  • Tayar AM [3]
  • Torres R [3]
  • Wang H [3]
  • Wang TE [3]
  • Wennemuth G [3]
  • Wiesehoefer C [3]
  • Wirschell M [3]
  • Yin W [3]
  • Zariwala MA [3]
  • Agard DA [2]
  • Anderson L [2]
  • Daniels LA [2]
  • Ebmeier CC [2]
  • Fabritius AS [2]

Author by ORCID

  • Nicastro D [61]
  • Gui L [15]
  • Fu G [15]
  • Lin J [11]
  • Witman GB [11]
  • Cai K [10]
  • Yang JE [8]
  • Lundeen RA [8]
  • Lin J [8]
  • Ingalls AE [8]
  • Hou Y [7]
  • Reese ML [6]
  • O'shaughnessy WJ [6]
  • Wloga D [5]
  • Grzemska M [5]
  • Augspurger K [5]
  • Joachimiak E [5]
  • Nicastro D [5]
  • Zhao Y [4]
  • Louka P [4]
  • Phan N [4]
  • Nicastro D [4]
  • Dupuis-williams P [4]
  • Cheng X [4]
  • Jenni S [3]
  • Harrison SC [3]
  • Chung JJ [3]
  • Smith EF [3]
  • Davies KM [3]
  • Porter ME [3]
  • Hwang JY [3]
  • Schrad JR [3]
  • Wiesehoefer C [3]
  • Wang H [3]
  • Fu G [3]
  • Lishko PV [3]
  • Wennemuth G [3]
  • Spietz RL [2]
  • Okada K [2]
  • Heuser T [2]
  • Morris RM [2]
  • Li S [2]
  • Agard DA [2]
  • Smith MC [2]
  • Pinskey JM [1]
  • Yin W [1]
  • Schwartz CL [1]
  • Grigorieff N [1]
  • Krell J [1]
  • Smith BW [1]
  • Nicastro D [1]

Journal

  • MOL BIOL CELL [19]
  • NAT COMMUN [10]
  • TO BE PUBLISHED [10]
  • SCI REP [8]
  • J CELL BIOL [7]
  • MBIO [6]
  • PNAS [6]
  • SCIENCE [6]
  • J CELL SCI [4]
  • ELIFE [3]
  • FASEB J [3]
  • NATURE [3]
  • ENVIRON MICROBIOL [2]
  • NAT CELL BIOL [2]
  • APPL ENVIRON MICROBIOL [1]
  • BIORXIV [1]
  • CYTOSKELETON [1]
  • NAT METHODS [1]

Software

  • IMOD [38]
  • MATLAB [19]
  • PEET [13]
  • ETOMO [12]
  • CISTEM [3]
  • IMOD, PEET [2]
  • XMIPP [2]
  • 3DMOD [1]
  • TOMOCTF [1]

Microscope

  • FEI TITAN KRIOS [48]
  • FEI TECNAI F30 [31]
  • FEI TECNAI F20 [7]
  • FEI POLARA 300 [3]
  • JEOL 2200FS [1]

Electron Source

  • FIELD EMISSION GUN [90]

Film or detector model

  • GATAN K2 SUMMIT 4K X 4K [18]
  • GATAN ULTRASCAN 1000 2K X 2K [18]
  • GATAN K3 6K X 4K [14]
  • GATAN K3 BIOQUANTUM 6K X 4K [12]
  • DIRECT ELECTRON DE-16 4K X 4K [8]
  • TVIPS TEMCAM-F416 4K X 4K [7]
  • GATAN ORIUS SC200 2K X 2K [5]
  • GATAN MULTISCAN [4]
  • GENERIC GATAN 2K X 2K [3]
  • DIRECT ELECTRON DE-20 5K X 3K [1]

EMPIAR Experiment type

  • EMDB [2]

EMPIAR Image category

  • TILT SERIES [2]

External links

  • PDB [5]
  • EMPIAR [4]
  • ChEBI [3]
  • ChEMBL [3]
  • DrugBank [3]
  • Gene Ontology [3]
  • InterPro [3]
  • PDBe-Kb [3]
  • Pfam [3]
  • UniProt [3]
  • EMDB [2]