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author:"Lynch EM"

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Current Database

  • EMDB [43]

Current status

  • REL [43]

Sample type

  • Complex [43]
  • Protein [41]
  • Ligand [34]

Organism

  • Homo sapiens [16]
  • Saccharomyces cerevisiae [11]
  • Escherichia coli [6]
  • Mycobacterium tuberculosis [4]
  • Mus musculus [3]
  • Synthetic construct [3]
  • Saccharomyces cerevisiae [1]
  • Aequorea victoria [1]

EM Method

  • Single-particle [34]
  • Helical reconstruction [9]

Resolution

  • ≥ 2Å and < 3Å [14]
  • ≥ 3Å and < 4Å [16]
  • ≥ 4Å and < 5Å [1]
  • ≥ 5Å and < 6Å [2]
  • ≥ 6Å and < 8Å [8]
  • ≥ 8Å and < 12Å [1]
  • ≥ 16Å and < 20Å [1]

Model molecular weight

  • 50-100 kDa [1]
  • 100-250 kDa [2]
  • 250-500 kDa [19]
  • 500-1000 kDa [10]
  • 1-2 MDa [8]

Release Date

  • 2025 [5]
  • 2024 [6]
  • 2022 [1]
  • 2021 [20]
  • 2020 [2]
  • 2019 [2]
  • 2017 [7]

Author by name

  • Kollman JM [43]
  • Lynch EM [43]
  • Hansen JM [27]
  • Dimaio F [15]
  • Farrell DP [11]
  • Albanese S [10]
  • Borrelli K [10]
  • Dimattia MA [10]
  • Horowitz A [10]
  • Kaila N [10]
  • Kennedy MA [10]
  • Kreutter KD [10]
  • Mcelwee JJ [10]
  • Quispe J [10]
  • Quispe JD [10]
  • Toms AV [10]
  • Verras A [10]
  • Van Zundert Gcp [10]
  • Dimattia MA [8]
  • Baldwin EP [7]
  • Barry RM [7]
  • Endrizzi JA [7]
  • Gitai Z [7]
  • Hicks DR [7]
  • Maker A [7]
  • Shepherd M [7]
  • Kollman J [5]
  • Webb BA [5]
  • Baker D [4]
  • Cooper M [4]
  • Hansen H [4]
  • Salay L [4]
  • Timr S [4]
  • Akkineni S [3]
  • Benna I [3]
  • Bethel NP [3]
  • De Yoreo Jj [3]
  • Decarreau J [3]
  • Derivery E [3]
  • Farrell D [3]
  • Sheffler W [3]
  • Shen H [3]
  • Watson JL [3]
  • Lynch E [2]
  • Amara N [1]
  • Bai H [1]
  • Bick MJ [1]
  • Bogyo M [1]
  • Boyken SE [1]
  • Brunette TJ [1]
  • Catterall WA [1]
  • Cooper MP [1]
  • Dixit VM [1]
  • Dosey AM [1]
  • Dou J [1]
  • Gamal El-Din Tm [1]
  • Garner EC [1]
  • Hsia Y [1]
  • Huang PS [1]
  • Jiang D [1]
  • Johnson MC [1]
  • Kayagaki N [1]
  • Lai Z [1]
  • Lu P [1]
  • Luisi BF [1]
  • Ma D [1]
  • Ma T [1]
  • Matsuura T [1]
  • Murray AW [1]
  • Newton K [1]
  • Pei XY [1]
  • Reggiano G [1]
  • Sangaraju D [1]
  • Staben ST [1]
  • Stewart L [1]
  • Stoddard PR [1]
  • Uyeda A [1]
  • Voronkova MA [1]
  • Williams TA [1]
  • Xu C [1]
  • Xu Q [1]
  • Yu K [1]

Author by ORCID

  • Lynch EM [39]
  • Hansen JM [27]
  • Kollman JM [18]
  • Dimaio F [11]
  • Quispe J [10]
  • Quispe JD [10]
  • Borrelli K [10]
  • Albanese S [10]
  • Maker A [7]
  • Baldwin EP [7]
  • Barry RM [7]
  • Baker D [4]
  • Salay L [4]
  • Cooper M [4]
  • Webb BA [4]
  • Timr S [4]
  • Bethel NP [3]
  • Akkineni S [3]
  • Shen H [3]
  • De Yoreo Jj [3]
  • Derivery E [3]
  • Lai Z [1]
  • Lu P [1]
  • Dosey AM [1]
  • Farrell DP [1]
  • Hsia Y [1]
  • Voronkova MA [1]
  • Bai H [1]
  • Murray AW [1]
  • Johnson MC [1]
  • Cooper MP [1]
  • Uyeda A [1]
  • Jiang D [1]
  • Boyken SE [1]
  • Gamal El-Din Tm [1]
  • Huang PS [1]
  • Xu C [1]
  • Xu Q [1]
  • Garner EC [1]
  • Brunette TJ [1]
  • Matsuura T [1]
  • Williams TA [1]
  • Luisi BF [1]
  • Bogyo M [1]
  • Stewart L [1]
  • Stoddard PR [1]

Journal

  • ELIFE [10]
  • PNAS [10]
  • NAT STRUCT MOL BIOL [9]
  • NAT COMMUN [4]
  • TO BE PUBLISHED [4]
  • NAT NANOTECHNOL [3]
  • CELL [1]
  • NATURE [1]
  • SCIENCE [1]

Software

  • RELION [22]
  • CRYOSPARC [12]
  • SPIDER [5]
  • CTFFIND [4]
  • HSEARCH_LORENTZ [4]
  • CISTEM [2]

Microscope

  • FEI TITAN KRIOS [32]
  • FEI TECNAI F20 [5]
  • TFS GLACIOS [3]
  • FEI POLARA 300 [1]
  • FEI TALOS ARCTICA [1]
  • FEI TECNAI SPIRIT [1]

Electron Source

  • FIELD EMISSION GUN [43]

Film or detector model

  • GATAN K2 SUMMIT 4K X 4K [37]
  • GATAN K3 6K X 4K [4]
  • GATAN K3 BIOQUANTUM 6K X 4K [1]
  • GATAN ULTRASCAN 4000 4K X 4K [1]

External links

  • PDB [40]
  • UniProt [38]
  • ChEBI [34]
  • ChEMBL [34]
  • DrugBank [34]
  • AlphaFold DB [29]
  • PDBe-Kb [22]
  • Gene Ontology [21]
  • InterPro [21]
  • Pfam [21]
  • Complex Portal [5]
Sort by: Download
Showing 1 - 10 of 43. Page 1 of 5
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EMD-42605
Download Map
3D View
M. tuberculosis CTP synthase filament bound to substrates
Release date: July 2, 2025
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 8uv4
Q-score: 0.469

Lynch EM, Kollman JM

To Be Published

EMD-42611
Download Map
3D View
M. tuberculosis CTP synthase tetramer bound to CTP
Release date: July 2, 2025
Resolution: 3.6 Å
EM Method: Single-particle
Fitted PDBs: 8uv8
Q-score: 0.447

Lynch EM, Kollman JM

To Be Published

EMD-42612
Download Map
3D View
M. tuberculosis CTP synthase bound to inhibitor GSK1570606A
Release date: July 2, 2025
Resolution: 2.8 Å
EM Method: Single-particle
Fitted PDBs: 8uv9
Q-score: 0.606

Lynch EM, Kollman JM

To Be Published

EMD-42613
Download Map
3D View
M. tuberculosis CTP synthase bound to inhibitor GSK735826A
Release date: July 2, 2025
Resolution: 2.8 Å
EM Method: Single-particle
Fitted PDBs: 8uva
Q-score: 0.576

Lynch EM, Kollman JM

To Be Published

EMD-43749
Download Map
3D View
Human liver phosphofructokinase-1 filament in the R-state conformation
Release date: Jan. 29, 2025
Resolution: 3.6 Å
EM Method: Single-particle
Fitted PDBs: 8w2i

Lynch EM, Hansen H, Salay L, Cooper M, Timr S, Kollman JM, Webb BA

Nat Commun (2024) 15 pp. 7323-7323 [ Pubmed: 39183237 DOI: doi:10.1038/s41467-024-51808-6 ]

EMD-43747
Download Map
3D View
Human liver phosphofructokinase-1 in the R-state conformation
Release date: Sept. 11, 2024
Resolution: 3.0 Å
EM Method: Single-particle
Fitted PDBs: 8w2g
Q-score: 0.545

Lynch EM, Hansen H, Salay L, Cooper M, Timr S, Kollman JM, Webb BA

Nat Commun (2024) 15 pp. 7323-7323 [ Pubmed: 39183237 DOI: doi:10.1038/s41467-024-51808-6 ]

EMD-43748
Download Map
3D View
Human liver phosphofructokinase-1 in the T-state conformation
Release date: Sept. 11, 2024
Resolution: 2.6 Å
EM Method: Single-particle
Fitted PDBs: 8w2h
Q-score: 0.596

Lynch EM, Hansen H, Salay L, Cooper M, Timr S, Kollman JM, Webb BA

Nat Commun (2024) 15 pp. 7323-7323 [ Pubmed: 39183237 DOI: doi:10.1038/s41467-024-51808-6 ]

EMD-43750
Download Map
3D View
Human liver phosphofructokinase-1 filament in the T-state conformation
Release date: Sept. 11, 2024
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 8w2j
Q-score: 0.448

Lynch EM, Hansen H, Salay L, Cooper M, Timr S, Kollman JM, Webb BA

Nat Commun (2024) 15 pp. 7323-7323 [ Pubmed: 39183237 DOI: doi:10.1038/s41467-024-51808-6 ]

EMD-42070
Download Map
3D View
DpHF18 filament
Release date: April 10, 2024
Resolution: 3.6 Å
EM Method: Helical reconstruction
Fitted PDBs: 8uao
Q-score: 0.41

Shen H, Lynch EM, Akkineni S, Watson JL, Decarreau J, Bethel NP, Benna I, Sheffler W, Farrell D, DiMaio F, Derivery E, De Yoreo JJ, Kollman J, Baker D

Nat Nanotechnol (2024) 19 pp. 1016-1021 [ Pubmed: 38570702 DOI: doi:10.1038/s41565-024-01641-1 ]

EMD-42075
Download Map
3D View
DpHF7 filament
Release date: April 10, 2024
Resolution: 3.3 Å
EM Method: Helical reconstruction
Fitted PDBs: 8ub3
Q-score: 0.467

Shen H, Lynch EM, Akkineni S, Watson JL, Decarreau J, Bethel NP, Benna I, Sheffler W, Farrell D, DiMaio F, Derivery E, De Yoreo JJ, Kollman J, Baker D

Nat Nanotechnol (2024) 19 pp. 1016-1021 [ Pubmed: 38570702 DOI: doi:10.1038/s41565-024-01641-1 ]

Sort by: Download
Showing 1 - 10 of 43. Page 1 of 5
Display:
Statistics
×

Download











































Preview first 10
Download

Filter By

Current Database

  • EMDB [43]

Current status

  • REL [43]

Sample type

  • Complex [43]
  • Protein [41]
  • Ligand [34]

Organism

  • Homo sapiens [16]
  • Saccharomyces cerevisiae [11]
  • Escherichia coli [6]
  • Mycobacterium tuberculosis [4]
  • Mus musculus [3]
  • Synthetic construct [3]
  • Saccharomyces cerevisiae [1]
  • Aequorea victoria [1]

EM Method

  • Single-particle [34]
  • Helical reconstruction [9]

Resolution

  • ≥ 2Å and < 3Å [14]
  • ≥ 3Å and < 4Å [16]
  • ≥ 4Å and < 5Å [1]
  • ≥ 5Å and < 6Å [2]
  • ≥ 6Å and < 8Å [8]
  • ≥ 8Å and < 12Å [1]
  • ≥ 16Å and < 20Å [1]

Model molecular weight

  • 50-100 kDa [1]
  • 100-250 kDa [2]
  • 250-500 kDa [19]
  • 500-1000 kDa [10]
  • 1-2 MDa [8]

Release Date

  • 2025 [5]
  • 2024 [6]
  • 2022 [1]
  • 2021 [20]
  • 2020 [2]
  • 2019 [2]
  • 2017 [7]

Author by name

  • Kollman JM [43]
  • Lynch EM [43]
  • Hansen JM [27]
  • Dimaio F [15]
  • Farrell DP [11]
  • Albanese S [10]
  • Borrelli K [10]
  • Dimattia MA [10]
  • Horowitz A [10]
  • Kaila N [10]
  • Kennedy MA [10]
  • Kreutter KD [10]
  • Mcelwee JJ [10]
  • Quispe J [10]
  • Quispe JD [10]
  • Toms AV [10]
  • Verras A [10]
  • Van Zundert Gcp [10]
  • Dimattia MA [8]
  • Baldwin EP [7]
  • Barry RM [7]
  • Endrizzi JA [7]
  • Gitai Z [7]
  • Hicks DR [7]
  • Maker A [7]
  • Shepherd M [7]
  • Kollman J [5]
  • Webb BA [5]
  • Baker D [4]
  • Cooper M [4]
  • Hansen H [4]
  • Salay L [4]
  • Timr S [4]
  • Akkineni S [3]
  • Benna I [3]
  • Bethel NP [3]
  • De Yoreo Jj [3]
  • Decarreau J [3]
  • Derivery E [3]
  • Farrell D [3]
  • Sheffler W [3]
  • Shen H [3]
  • Watson JL [3]
  • Lynch E [2]
  • Amara N [1]
  • Bai H [1]
  • Bick MJ [1]
  • Bogyo M [1]
  • Boyken SE [1]
  • Brunette TJ [1]
  • Catterall WA [1]
  • Cooper MP [1]
  • Dixit VM [1]
  • Dosey AM [1]
  • Dou J [1]
  • Gamal El-Din Tm [1]
  • Garner EC [1]
  • Hsia Y [1]
  • Huang PS [1]
  • Jiang D [1]
  • Johnson MC [1]
  • Kayagaki N [1]
  • Lai Z [1]
  • Lu P [1]
  • Luisi BF [1]
  • Ma D [1]
  • Ma T [1]
  • Matsuura T [1]
  • Murray AW [1]
  • Newton K [1]
  • Pei XY [1]
  • Reggiano G [1]
  • Sangaraju D [1]
  • Staben ST [1]
  • Stewart L [1]
  • Stoddard PR [1]
  • Uyeda A [1]
  • Voronkova MA [1]
  • Williams TA [1]
  • Xu C [1]
  • Xu Q [1]
  • Yu K [1]

Author by ORCID

  • Lynch EM [39]
  • Hansen JM [27]
  • Kollman JM [18]
  • Dimaio F [11]
  • Quispe J [10]
  • Quispe JD [10]
  • Borrelli K [10]
  • Albanese S [10]
  • Maker A [7]
  • Baldwin EP [7]
  • Barry RM [7]
  • Baker D [4]
  • Salay L [4]
  • Cooper M [4]
  • Webb BA [4]
  • Timr S [4]
  • Bethel NP [3]
  • Akkineni S [3]
  • Shen H [3]
  • De Yoreo Jj [3]
  • Derivery E [3]
  • Lai Z [1]
  • Lu P [1]
  • Dosey AM [1]
  • Farrell DP [1]
  • Hsia Y [1]
  • Voronkova MA [1]
  • Bai H [1]
  • Murray AW [1]
  • Johnson MC [1]
  • Cooper MP [1]
  • Uyeda A [1]
  • Jiang D [1]
  • Boyken SE [1]
  • Gamal El-Din Tm [1]
  • Huang PS [1]
  • Xu C [1]
  • Xu Q [1]
  • Garner EC [1]
  • Brunette TJ [1]
  • Matsuura T [1]
  • Williams TA [1]
  • Luisi BF [1]
  • Bogyo M [1]
  • Stewart L [1]
  • Stoddard PR [1]

Journal

  • ELIFE [10]
  • PNAS [10]
  • NAT STRUCT MOL BIOL [9]
  • NAT COMMUN [4]
  • TO BE PUBLISHED [4]
  • NAT NANOTECHNOL [3]
  • CELL [1]
  • NATURE [1]
  • SCIENCE [1]

Software

  • RELION [22]
  • CRYOSPARC [12]
  • SPIDER [5]
  • CTFFIND [4]
  • HSEARCH_LORENTZ [4]
  • CISTEM [2]

Microscope

  • FEI TITAN KRIOS [32]
  • FEI TECNAI F20 [5]
  • TFS GLACIOS [3]
  • FEI POLARA 300 [1]
  • FEI TALOS ARCTICA [1]
  • FEI TECNAI SPIRIT [1]

Electron Source

  • FIELD EMISSION GUN [43]

Film or detector model

  • GATAN K2 SUMMIT 4K X 4K [37]
  • GATAN K3 6K X 4K [4]
  • GATAN K3 BIOQUANTUM 6K X 4K [1]
  • GATAN ULTRASCAN 4000 4K X 4K [1]

External links

  • PDB [40]
  • UniProt [38]
  • ChEBI [34]
  • ChEMBL [34]
  • DrugBank [34]
  • AlphaFold DB [29]
  • PDBe-Kb [22]
  • Gene Ontology [21]
  • InterPro [21]
  • Pfam [21]
  • Complex Portal [5]