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author:"Liao HY"

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Current Database

  • EMDB [14]

Current status

  • REL [14]

Sample type

  • Complex [14]
  • Sample [12]
  • Protein [4]
  • RNA [4]
  • Ligand [1]

Organism

  • Escherichia coli [7]
  • Homo sapiens [3]
  • Oryctolagus cuniculus [3]
  • Pestivirus c [2]
  • Severe acute respiratory syndrome coronavirus [2]
  • Saccharomyces cerevisiae [1]
  • Trypanosoma brucei [1]

EM Method

  • Single-particle [14]

Resolution

  • ≥ 4Å and < 5Å [1]
  • ≥ 5Å and < 6Å [1]
  • ≥ 8Å and < 12Å [5]
  • ≥ 12Å and < 16Å [6]
  • ≥ 20Å and < 30Å [1]

Model molecular weight

  • 50-100 kDa [1]
  • 100-250 kDa [1]
  • 500-1000 kDa [1]
  • 2-5 MDa [7]

Release Date

  • 2022 [2]
  • 2014 [1]
  • 2013 [4]
  • 2012 [6]
  • 2010 [1]

Author by name

  • Liao HY [14]
  • Frank J [12]
  • Fu J [8]
  • Agirrezabala X [6]
  • Green R [6]
  • Ortiz-meoz RF [6]
  • Schreiner E [6]
  • Schulten K [6]
  • Hashem Y [5]
  • Grassucci RA [4]
  • Langlois R [4]
  • Des Georges A [4]
  • Hellen CUT [3]
  • Pestova TV [3]
  • Chang SY [2]
  • Chang YH [2]
  • Chao TL [2]
  • Chen TH [2]
  • Chen X [2]
  • Chen YH [2]
  • Cheng CW [2]
  • Cheng TR [2]
  • Chou YC [2]
  • Dhote V [2]
  • Hellen CU [2]
  • Hsueh YP [2]
  • Huang HY [2]
  • Huang PY [2]
  • Jan JT [2]
  • Kao HC [2]
  • Lin KI [2]
  • Liu YM [2]
  • Lo JM [2]
  • Ma C [2]
  • Ma HH [2]
  • Mohapatra A [2]
  • Shahed-al-mahmud M [2]
  • Tsai CY [2]
  • Tsai HY [2]
  • Tsai YM [2]
  • Wang SW [2]
  • Wong CH [2]
  • Wu CY [2]
  • Wu YM [2]
  • Bajaj C [1]
  • Buss SN [1]
  • Dashti A [1]
  • Dhote A [1]
  • Dinman J [1]
  • Fung R [1]
  • Grassucci B [1]
  • Hosseinizadeh A [1]
  • Huang H-Y [1]
  • Jobe A [1]
  • Jossinet F [1]
  • Lei J [1]
  • Li W [1]
  • Madison-antenucci S [1]
  • Ourmazd A [1]
  • Pallesen J [1]
  • Schwander P [1]
  • Sharma G [1]
  • Simon AE [1]
  • Stupina VA [1]
  • Westhof E [1]
  • Wower I [1]
  • Wower J [1]
  • Wu Y-M [1]
  • Zhang Q [1]
  • Zwieb C [1]
  • Des-georges A [1]

Author by ORCID

  • Ortiz-meoz RF [6]
  • Des Georges A [4]
  • Kao HC [2]
  • Wu YM [2]
  • Chou YC [2]
  • Hsueh YP [2]
  • Wang SW [2]
  • Tsai YM [2]
  • Lo JM [2]
  • Shahed-al-mahmud M [2]
  • Chen X [2]
  • Ma C [2]
  • Chang SY [2]
  • Huang HY [2]
  • Liao HY [2]
  • Tsai HY [2]
  • Chang YH [2]
  • Jan JT [2]
  • Chao TL [2]
  • Wong CH [2]
  • Ma HH [2]
  • Wu CY [2]
  • Mohapatra A [2]
  • Cheng CW [2]
  • Cheng TR [2]
  • Lin KI [2]
  • Dinman J [1]
  • Pallesen J [1]
  • Bajaj C [1]
  • Madison-antenucci S [1]

Journal

  • PNAS [7]
  • NATURE [3]
  • SCI TRANSL MED [2]
  • CELL [1]
  • EMBO J [1]

Software

  • MDFF [6]
  • XMIPP, SPIDER [6]
  • SPIDER, RELION [3]
  • CHIMERA [2]
  • SPIDER [2]
  • CISTEM [1]

Microscope

  • FEI TECNAI F30 [6]
  • FEI POLARA 300 [3]
  • FEI TECNAI F20 [3]
  • FEI TECNAI 20 [1]
  • FEI TITAN KRIOS [1]

Electron Source

  • FIELD EMISSION GUN [14]

Film or detector model

  • TVIPS TEMCAM-F415 4K X 4K [8]
  • GATAN ULTRASCAN 4000 4K X 4K [3]
  • GATAN K3 BIOQUANTUM 6K X 4K [1]
  • GATAN ULTRASCAN 1000 2K X 2K [1]
  • KODAK SO-163 FILM [1]

External links

  • PDB [14]
  • AlphaFold DB [1]
  • ChEBI [1]
  • ChEMBL [1]
  • Complex Portal [1]
  • Gene Ontology [1]
  • InterPro [1]
  • PDBe-Kb [1]
  • Pfam [1]
  • UniProt [1]
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Showing 1 - 10 of 14. Page 1 of 2
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EMD-32832
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3D View
SARS-CoV-2 Spike in complex with Fab of m31A7
CryoEM
Release date: March 23, 2022
Resolution: 4.7 Å
EM Method: Single-particle
Fitted PDBs: 7wuh
Q-score: 0.245
Similar entry percentile: 42%

Huang HY, Liao HY, Chen X, Wang SW, Cheng CW, Shahed-Al-Mahmud M, Liu YM, Mohapatra A, Chen TH, Lo JM, Wu YM, Ma HH, Chang YH, Tsai HY, Chou YC, Hsueh YP, Tsai CY, Huang PY, Chang SY, Chao TL, Kao HC, Tsai YM, Chen YH, Wu CY, Jan JT, Cheng TR, Lin KI, Ma C, Wong CH

Sci Transl Med (2022) 14 pp. eabm0899-eabm0899 [ DOI: doi:10.1126/scitranslmed.abm0899 Pubmed: 35230146 ]

EMD-32825
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Negative stain volume of the mono-GlcNAc-decorated SARS-CoV-2 Spike
Negative staining
Release date: March 16, 2022
Resolution: 14.5 Å
EM Method: Single-particle

Huang HY, Liao HY, Chen X, Wang SW, Cheng CW, Shahed-Al-Mahmud M, Liu YM, Mohapatra A, Chen TH, Lo JM, Wu YM, Ma HH, Chang YH, Tsai HY, Chou YC, Hsueh YP, Tsai CY, Huang PY, Chang SY, Chao TL, Kao HC, Tsai YM, Chen YH, Wu CY, Jan JT, Cheng TR, Lin KI, Ma C, Wong CH

Sci Transl Med (2022) 14 pp. eabm0899-eabm0899 [ DOI: doi:10.1126/scitranslmed.abm0899 Pubmed: 35230146 ]

EMD-6044
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Ribosome conformation along minimum free-energy trajectory
CryoEM
Release date: Oct. 8, 2014
Resolution: 20.0 Å
EM Method: Single-particle

Dashti A, Schwander P, Langlois R, Fung R, Li W, Hosseinizadeh A, Liao HY, Pallesen J, Sharma G, Stupina VA, Simon AE, Dinman J, Frank J, Ourmazd A

PNAS (2014) 111 pp. 17492-17497 [ Pubmed: 25422471 DOI: doi:10.1073/pnas.1419276111 ]

EMD-2450
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Cryo-EM map of the CSFV IRES in complex with the small ribosomal 40S subunit and DHX29
CryoEM
Release date: Nov. 13, 2013
Resolution: 8.5 Å
EM Method: Single-particle
Fitted PDBs: 4c4q
Q-score: 0.126
Similar entry percentile: 63%

Hashem Y, des Georges A, Dhote A, Langlois R, Liao HY, Grassucci RA, Pestova TV, Hellen CUT, Frank J

Nature (2013) 503 pp. 539-543 [ Pubmed: 24185006 DOI: doi:10.1038/nature12658 ]

EMD-2451
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Cryo-EM structure of the CSFV IRES in complex with eIF3, small ribosomal 40S subunit and DHX29
CryoEM
Release date: Nov. 13, 2013
Resolution: 9.3 Å
EM Method: Single-particle

Hashem Y, des Georges A, Dhote V, Langlois R, Liao HY, Grassucci RA, Pestova TV, Hellen CU, Frank J

Nature (2013) 503 pp. 539-543 [ Pubmed: 24185006 DOI: doi:10.1038/nature12658 ]

EMD-5658
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Cryo-electron microscopy structure of the mammalian 43S preinitiation complex bound to DHX29
CryoEM
Release date: June 5, 2013
Resolution: 11.6 Å
EM Method: Single-particle

Hashem Y, des Georges A, Dhote V, Langlois R, Liao HY, Grassucci RA, Hellen CU, Pestova TV, Frank J

Cell (2013) 153 pp. 1108-1119 [ Pubmed: 23706745 DOI: doi:10.1016/j.cell.2013.04.036 ]

EMD-2239
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Cryo-electron microscopy structure of the Trypanosoma brucei 80S ribosome
CryoEM
Release date: Feb. 13, 2013
Resolution: 5.57 Å
EM Method: Single-particle
Fitted PDBs: 4v8m
Q-score: 0.239
Similar entry percentile: 77%

Hashem Y, des Georges A, Fu J, Buss SN, Jossinet F, Jobe A, Zhang Q, Liao HY, Grassucci RA, Bajaj C, Westhof E, Madison-Antenucci S, Frank J

Nature (2013) 494 pp. 385-389 [ Pubmed: 23395961 DOI: doi:10.1038/nature11872 ]

EMD-5359
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New mRNA-tRNA translocation intermediates revealed by cryoEM: Class 4A partially rotated I 70S ribosome with A-site and P-site tRNAs
CryoEM
Release date: Feb. 16, 2012
Resolution: 14.7 Å
EM Method: Single-particle
Fitted PDBs: 4v6o
Q-score: 0.065
Similar entry percentile: 77%

Agirrezabala X, Liao HY, Schreiner E, Fu J, Ortiz-Meoz RF, Schulten K, Green R, Frank J

PNAS (2012) 109 pp. 6094-6099 [ DOI: doi:10.1073/pnas.1201288109 Pubmed: 22467828 ]

EMD-5360
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New mRNA-tRNA translocation intermediates revealed by cryoEM: Class 3 unrotated 70S ribosome with P-site tRNA
CryoEM
Release date: Feb. 16, 2012
Resolution: 13.1 Å
EM Method: Single-particle
Fitted PDBs: 4v6s
Q-score: 0.068
Similar entry percentile: 48%

Agirrezabala X, Liao HY, Schreiner E, Fu J, Ortiz-Meoz RF, Schulten K, Green R, Frank J

PNAS (2012) 109 pp. 6094-6099 [ DOI: doi:10.1073/pnas.1201288109 Pubmed: 22467828 ]

EMD-5361
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New mRNA-tRNA translocation intermediates revealed by cryoEM: Class 2 unrotated 70S ribosome with A-site and P-site tRNAs
CryoEM
Release date: Feb. 16, 2012
Resolution: 12.1 Å
EM Method: Single-particle
Fitted PDBs: 4v6n
Q-score: 0.077
Similar entry percentile: 77%

Agirrezabala X, Liao HY, Schreiner E, Fu J, Ortiz-Meoz RF, Schulten K, Green R, Frank J

PNAS (2012) 109 pp. 6094-6099 [ DOI: doi:10.1073/pnas.1201288109 Pubmed: 22467828 ]

Sort by: Download
Showing 1 - 10 of 14. Page 1 of 2
Display:
Statistics
×

Download


Preview 10 entries View All Download file

Filter By

Current Database

  • EMDB [14]

Current status

  • REL [14]

Sample type

  • Complex [14]
  • Sample [12]
  • Protein [4]
  • RNA [4]
  • Ligand [1]

Organism

  • Escherichia coli [7]
  • Homo sapiens [3]
  • Oryctolagus cuniculus [3]
  • Pestivirus c [2]
  • Severe acute respiratory syndrome coronavirus [2]
  • Saccharomyces cerevisiae [1]
  • Trypanosoma brucei [1]

EM Method

  • Single-particle [14]

Resolution

  • ≥ 4Å and < 5Å [1]
  • ≥ 5Å and < 6Å [1]
  • ≥ 8Å and < 12Å [5]
  • ≥ 12Å and < 16Å [6]
  • ≥ 20Å and < 30Å [1]

Model molecular weight

  • 50-100 kDa [1]
  • 100-250 kDa [1]
  • 500-1000 kDa [1]
  • 2-5 MDa [7]

Release Date

  • 2022 [2]
  • 2014 [1]
  • 2013 [4]
  • 2012 [6]
  • 2010 [1]

Author by name

  • Liao HY [14]
  • Frank J [12]
  • Fu J [8]
  • Agirrezabala X [6]
  • Green R [6]
  • Ortiz-meoz RF [6]
  • Schreiner E [6]
  • Schulten K [6]
  • Hashem Y [5]
  • Grassucci RA [4]
  • Langlois R [4]
  • Des Georges A [4]
  • Hellen CUT [3]
  • Pestova TV [3]
  • Chang SY [2]
  • Chang YH [2]
  • Chao TL [2]
  • Chen TH [2]
  • Chen X [2]
  • Chen YH [2]
  • Cheng CW [2]
  • Cheng TR [2]
  • Chou YC [2]
  • Dhote V [2]
  • Hellen CU [2]
  • Hsueh YP [2]
  • Huang HY [2]
  • Huang PY [2]
  • Jan JT [2]
  • Kao HC [2]
  • Lin KI [2]
  • Liu YM [2]
  • Lo JM [2]
  • Ma C [2]
  • Ma HH [2]
  • Mohapatra A [2]
  • Shahed-al-mahmud M [2]
  • Tsai CY [2]
  • Tsai HY [2]
  • Tsai YM [2]
  • Wang SW [2]
  • Wong CH [2]
  • Wu CY [2]
  • Wu YM [2]
  • Bajaj C [1]
  • Buss SN [1]
  • Dashti A [1]
  • Dhote A [1]
  • Dinman J [1]
  • Fung R [1]
  • Grassucci B [1]
  • Hosseinizadeh A [1]
  • Huang H-Y [1]
  • Jobe A [1]
  • Jossinet F [1]
  • Lei J [1]
  • Li W [1]
  • Madison-antenucci S [1]
  • Ourmazd A [1]
  • Pallesen J [1]
  • Schwander P [1]
  • Sharma G [1]
  • Simon AE [1]
  • Stupina VA [1]
  • Westhof E [1]
  • Wower I [1]
  • Wower J [1]
  • Wu Y-M [1]
  • Zhang Q [1]
  • Zwieb C [1]
  • Des-georges A [1]

Author by ORCID

  • Ortiz-meoz RF [6]
  • Des Georges A [4]
  • Kao HC [2]
  • Wu YM [2]
  • Chou YC [2]
  • Hsueh YP [2]
  • Wang SW [2]
  • Tsai YM [2]
  • Lo JM [2]
  • Shahed-al-mahmud M [2]
  • Chen X [2]
  • Ma C [2]
  • Chang SY [2]
  • Huang HY [2]
  • Liao HY [2]
  • Tsai HY [2]
  • Chang YH [2]
  • Jan JT [2]
  • Chao TL [2]
  • Wong CH [2]
  • Ma HH [2]
  • Wu CY [2]
  • Mohapatra A [2]
  • Cheng CW [2]
  • Cheng TR [2]
  • Lin KI [2]
  • Dinman J [1]
  • Pallesen J [1]
  • Bajaj C [1]
  • Madison-antenucci S [1]

Journal

  • PNAS [7]
  • NATURE [3]
  • SCI TRANSL MED [2]
  • CELL [1]
  • EMBO J [1]

Software

  • MDFF [6]
  • XMIPP, SPIDER [6]
  • SPIDER, RELION [3]
  • CHIMERA [2]
  • SPIDER [2]
  • CISTEM [1]

Microscope

  • FEI TECNAI F30 [6]
  • FEI POLARA 300 [3]
  • FEI TECNAI F20 [3]
  • FEI TECNAI 20 [1]
  • FEI TITAN KRIOS [1]

Electron Source

  • FIELD EMISSION GUN [14]

Film or detector model

  • TVIPS TEMCAM-F415 4K X 4K [8]
  • GATAN ULTRASCAN 4000 4K X 4K [3]
  • GATAN K3 BIOQUANTUM 6K X 4K [1]
  • GATAN ULTRASCAN 1000 2K X 2K [1]
  • KODAK SO-163 FILM [1]

External links

  • PDB [14]
  • AlphaFold DB [1]
  • ChEBI [1]
  • ChEMBL [1]
  • Complex Portal [1]
  • Gene Ontology [1]
  • InterPro [1]
  • PDBe-Kb [1]
  • Pfam [1]
  • UniProt [1]