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author:"Li Z"

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Current Database

  • EMDB [1076]
  • EMPIAR [17]

Current status

  • REL [1093]

Sample type

  • Complex [861]
  • Protein [847]
  • Ligand [494]
  • RNA [138]
  • Virus [117]
  • DNA [88]
  • Cell [56]
  • Cellular component [34]
  • Sample [23]
  • Other [10]
  • Tissue [1]

Organism

  • Homo sapiens [345]
  • Severe acute respiratory syndrome coronavirus [122]
  • Mus musculus [95]
  • Synthetic construct [75]
  • Human coronavirus hku1 [29]
  • Saccharomyces cerevisiae [29]
  • Escherichia coli [28]
  • Human cytomegalovirus [26]
  • Thermoanaerobaculum aquaticum [21]
  • Bos taurus [21]
  • Human immunodeficiency virus 1 [19]
  • Lama glama [18]
  • Gloeobacter violaceus [17]
  • Epstein-barr virus (strain gd1) [15]
  • Limisphaera ngatamarikiensis [15]
  • Severe acute respiratory syndrome coronavirus [13]
  • Lachnospiraceae bacterium nd2006 [12]
  • Bacillus subtilis [12]
  • Paenibacillus sp. 453mf [12]
  • Toxoplasma gondii [12]
  • Alphapapillomavirus 9 [10]
  • Thogotovirus thogotoense [10]
  • Enterovirus a [10]
  • Enterovirus a [10]
  • Epstein-barr virus (strain gd1) [9]
  • Sus scrofa [9]
  • Mycobacterium tuberculosis [8]
  • Banna virus [8]
  • Enterobacteria phage t4 [7]
  • Streptococcus pneumoniae [7]
  • Enterococcus faecalis [7]
  • Moraxella bovoculi [7]
  • Enterovirus d [7]
  • Saccharomyces cerevisiae [7]
  • Mycobacterium tuberculosis [7]
  • Human immunodeficiency virus 1 [6]
  • Clostridioides difficile [6]
  • Candidatus scalindua brodae [6]
  • (no species) [6]
  • Glycine max [6]
  • Trypanosoma brucei [6]
  • Salicola phage cgphi29 [6]
  • Oryctolagus cuniculus [6]
  • Thermoflavifilum thermophilum [5]
  • Pseudomonas aeruginosa [5]
  • Nipah virus [5]
  • Alphapapillomavirus 9 [5]
  • Streptococcus pneumoniae [5]
  • (no species) [5]
  • Rattus norvegicus [4]
  • Human papillomavirus [4]
  • Novosphingopyxis baekryungensis [4]
  • Stephanocyclus meneghinianus [4]
  • Spbetavirus spbeta [4]
  • Ephydatia fluviatilis [4]
  • Geobacter sulfurreducens [4]
  • Human herpesvirus 6b [4]
  • Rotavirus a [4]
  • Acinetobacter baumannii [4]
  • Periplaneta americana [4]
  • Lates calcarifer [4]
  • Escherichia coli [4]
  • Odocoileus virginianus [4]
  • Nostoc sp. (strain pcc 7120 / sag 25.82 / utex 2576) [3]
  • Influenza a virus [3]
  • Hepatitis e virus [3]
  • Algae metagenome [3]
  • Bat coronavirus [3]
  • Chroomonas placoidea [3]
  • Selenomonas sp. [3]
  • (no species) [3]
  • Thermus thermophilus [3]
  • Thalassiosira pseudonana [3]
  • Bos mutus grunniens [3]
  • Diguetia canities [3]
  • (no species) [3]
  • Human immunodeficiency virus 1 [3]
  • Bacillus subtilis [3]
  • Danio rerio [3]
  • Enterovirus a [3]
  • Escherichia coli [3]
  • Gallus gallus [3]
  • Kenya bat coronavirus btky72 [3]
  • Hepatitis b virus [2]
  • Alphapapillomavirus 9 [2]
  • Bacillus phage spr [2]
  • (no species) [2]
  • Measles morbillivirus [2]
  • Staphylococcus aureus [2]
  • Vibrio phage icp1_2011_a [2]
  • Middle east respiratory syndrome-related coronavirus [2]
  • Candidatus cloacimonetes bacterium adurb.bin088 [2]
  • Lachnospiraceae bacterium [2]
  • Chaetoceros neogracilis [2]
  • Mycolicibacterium smegmatis [2]
  • Metagenome [2]
  • Morbillivirus caprinae [2]
  • Bacillus halotolerans [2]
  • Erinaceus hedgehog coronavirus hku31 [2]
  • Adeno-associated virus [2]

EM Method

  • Single-particle [989]
  • Subtomogram averaging [53]
  • Helical reconstruction [18]
  • Tomography [16]

Resolution

  • < 2Å [2]
  • ≥ 2Å and < 3Å [249]
  • ≥ 3Å and < 4Å [506]
  • ≥ 4Å and < 5Å [97]
  • ≥ 5Å and < 6Å [33]
  • ≥ 6Å and < 8Å [63]
  • ≥ 8Å and < 12Å [37]
  • ≥ 12Å and < 16Å [13]
  • ≥ 16Å and < 20Å [4]
  • ≥ 20Å and < 30Å [15]
  • ≥ 30Å [41]

Model molecular weight

  • 0-50 kDa [8]
  • 50-100 kDa [41]
  • 100-250 kDa [288]
  • 250-500 kDa [245]
  • 500-1000 kDa [93]
  • 1-2 MDa [44]
  • 2-5 MDa [19]
  • 5-10 MDa [28]
  • > 10 MDa [9]

Release Date

  • 2026 [85]
  • 2025 [179]
  • 2024 [256]
  • 2023 [183]
  • 2022 [120]
  • 2021 [96]
  • 2020 [61]
  • 2019 [31]
  • 2018 [34]
  • 2017 [20]
  • 2016 [6]
  • 2015 [7]
  • 2014 [3]
  • 2011 [11]
  • 2004 [1]

Author by name

  • Li Z [1091]
  • Chen X [148]
  • Zhang Y [139]
  • Wang Y [136]
  • Wang J [125]
  • Liu Y [106]
  • Li Y [102]
  • He J [100]
  • Wang X [97]
  • Zhang C [97]
  • Xiong X [95]
  • Li J [92]
  • Liu B [89]
  • Yu H [87]
  • Zhang H [86]
  • Li S [85]
  • Yu X [78]
  • Li X [74]
  • Zhang J [72]
  • Zhang Z [71]
  • Zhang X [70]
  • Liu S [65]
  • Li M [63]
  • Wang Q [63]
  • Liu C [61]
  • Lu M [61]
  • Xiao Y [61]
  • Chen M [60]
  • Guo Q [60]
  • Wang M [60]
  • Liu X [59]
  • Chen J [58]
  • Gao X [56]
  • Liu L [56]
  • Xia N [56]
  • Chen L [55]
  • Gao Y [55]
  • Wang P [54]
  • Wu W [54]
  • Chen Q [53]
  • Kong J [53]
  • Zhang L [52]
  • Cong Y [51]
  • Li ZX [51]
  • Xu Y [51]
  • Zheng Q [51]
  • He M [50]
  • Liu W [50]
  • Yan X [50]
  • Chen Y [49]
  • Shi Y [48]
  • Wang C [48]
  • Yu Z [48]
  • Yan P [47]
  • Yan Q [47]
  • Huang Y [46]
  • Xiao YB [46]
  • Zhao J [46]
  • Huang Z [45]
  • Wang W [45]
  • Zhao H [45]
  • Zhou ZH [45]
  • Gu Y [44]
  • Hong Q [44]
  • Liu Q [44]
  • Pan X [44]
  • Yang Y [44]
  • Huang S [43]
  • Wang L [43]
  • Baker D [41]
  • Chen Z [41]
  • Wang H [41]
  • Xu S [41]
  • Yan N [41]
  • Zhao D [41]
  • Niu X [40]
  • Li ZH [39]
  • Liu J [39]
  • Li L [38]
  • Shi J [38]
  • Sun JP [38]
  • Cui Y [37]
  • Xu C [37]
  • Yang S [37]
  • Duan Y [36]
  • Hua C [36]
  • Sun H [36]
  • Xue J [36]
  • Zhang Q [36]
  • Liu D [35]
  • Xu L [35]
  • Zhu Z [35]
  • Gao P [34]
  • Huang G [34]
  • Pang J [34]
  • Wu J [34]
  • Yang H [34]
  • Zhao Y [34]
  • Chen S [33]
  • Ma Y [33]

Author by ORCID

  • Xiong X [82]
  • Guo Q [55]
  • He J [54]
  • He M [50]
  • Chen X [48]
  • Zheng Q [48]
  • Xia N [45]
  • Yu X [41]
  • Gao X [37]
  • Huang Z [37]
  • Zhang C [37]
  • Xu S [37]
  • Xiao Y [33]
  • Cong Y [32]
  • Xu Y [31]
  • Soni N [31]
  • Li Y [31]
  • Li Z [31]
  • Echeverria I [31]
  • Duquette M [31]
  • Wang Y [30]
  • Li S [30]
  • Xiao P [30]
  • Sun JP [30]
  • Chen M [30]
  • Wang X [29]
  • Yu Z [29]
  • Li J [29]
  • Hou H [29]
  • Qi Y [29]
  • Liu W [29]
  • Zhao D [29]
  • Chen X [29]
  • Yang H [29]
  • Li Z [29]
  • Li Z [28]
  • Zhang H [28]
  • Chen L [28]
  • Yan N [28]
  • Zhu R [27]
  • Gao A [25]
  • Li Z [25]
  • Shen EZ [25]
  • Baker D [24]
  • Yin Z [24]
  • Gao N [24]
  • Wu J [23]
  • Zhou ZH [23]
  • Zhang Q [22]
  • Gui M [22]
  • Li Z [22]
  • Gao P [22]
  • Cui Y [22]
  • Zhang L [22]
  • Basak S [22]
  • Wong AHM [21]
  • Rini JM [21]
  • Li Z [21]
  • Baker TS [20]
  • Nitz M [20]
  • Gilbert M [20]
  • Chen X [20]
  • Yu H [20]
  • Li Z [20]
  • Zhang J [20]
  • Wu Y [20]
  • Ma S [20]
  • Zhang Y [20]
  • Liu Y [20]
  • Jin M [20]
  • Kong J [19]
  • Wang P [19]
  • Zhou P [19]
  • Yu G [19]
  • Habib G [19]
  • Wang J [19]
  • Hu C [19]
  • Yuan H [19]
  • Ma Y [19]
  • Li Z [18]
  • Jia N [18]
  • Liu X [18]
  • Li M [18]
  • Liu L [18]
  • Courbet A [18]
  • Zhao J [18]
  • Biggin PC [17]
  • Liu Q [17]
  • Bharambe N [17]
  • Zhu X [17]
  • Liu D [17]
  • Cheng T [17]
  • Jia YL [17]
  • Li Z [17]
  • Biswas A [17]
  • Lyumkis D [17]
  • Zhao C [17]
  • Wang Y [17]
  • Hong Q [17]
  • Kvaratskhelia M [17]

Journal

  • NAT COMMUN [285]
  • NATURE [115]
  • CELL [76]
  • SCIENCE [73]
  • PNAS [61]
  • MOL CELL [52]
  • CELL RES [51]
  • SCI ADV [50]
  • NUCLEIC ACIDS RES [37]
  • TO BE PUBLISHED [35]
  • BIORXIV [31]
  • NAT MICROBIOL [26]
  • NAT CHEM BIOL [20]
  • CELL HOST MICROBE [19]
  • NAT STRUCT MOL BIOL [19]
  • J VIROL [17]
  • ADV SCI [14]
  • CELL DISCOV [14]
  • EMERG MICROBES INFECT [13]
  • EMBO J [12]
  • CELL REP [10]
  • J MOL BIOL [10]
  • LIFE SCI ALLIANCE [10]
  • J AM CHEM SOC [8]
  • SIGNAL TRANSDUCT TARGET THER [7]
  • STRUCTURE [6]
  • PROTEIN CELL [5]
  • BIOCHEMISTRY [4]
  • VACCINE [4]
  • ANGEW CHEM INT ED ENGL [3]
  • NAT MATER [3]
  • PLANT COMMUN. [3]
  • SCI TRANSL MED [3]
  • ACS PHARMACOL TRANSL SCI [2]
  • ARCH BIOCHEM BIOPHYS [2]
  • ELIFE [2]
  • FRONT ENDOCRINOL [2]
  • INT J BIOL MACROMOL [2]
  • J INTEGR PLANT BIOL [2]
  • MBIO [2]
  • MOL THER METHODS CLIN DEV [2]
  • NAT CHEM [2]
  • ACS NANO [1]
  • ACTA PHARMACOL.SIN. [1]
  • ARCHIVES OF BIOCHEMISTRY AND BIOPHYSICS [1]
  • FASEB J [1]
  • NAT COMMUN . [1]
  • PHOTOSYNTH.RES. [1]
  • PLOS BIOL [1]
  • PLOS COMPUT BIOL [1]
  • PLOS GENET [1]
  • PLOS PATHOG [1]
  • PROTEIN EXPR PURIF [1]
  • VIROL SIN [1]
  • VIRUSES [1]

Software

  • CRYOSPARC [170]
  • RELION [146]
  • CTFFIND [18]
  • GCTF [12]
  • CISTEM [10]
  • IMOD, BSOFT [10]
  • COOT [8]
  • PHENIX [4]
  • SPARX, RELION [3]
  • FREALIGN [2]
  • HELICON [2]
  • SPIDER [2]
  • UCSF CHIMERAX [2]
  • AUTO3DEM [1]
  • CAMERA [1]
  • CTFFIND3, RELION [1]
  • EMAN [1]
  • EMAN2, IMAGIC, FREALIGN [1]
  • FOLDHUNTER [1]
  • PYTOM [1]
  • SAVR [1]
  • SPARX, RELION, FREALIGN [1]
  • UCSF CHIMERA [1]
  • WARP [1]

Microscope

  • FEI TITAN KRIOS [628]
  • TFS KRIOS [171]
  • FEI TALOS ARCTICA [112]
  • FEI TECNAI F30 [51]
  • FEI POLARA 300 [29]
  • TFS GLACIOS [23]
  • JEOL CRYO ARM 300 [18]
  • FEI TECNAI ARCTICA [13]
  • FEI TITAN [8]
  • FEI TECNAI F20 [7]
  • JEOL 2100F [6]
  • FEI TECNAI 20 [2]
  • FEI TECNAI SPIRIT [2]
  • JEOL 2100 [2]
  • JEOL 4000EX [1]
  • TFS TALOS [1]
  • TFS TITAN THEMIS [1]
  • TFS TUNDRA [1]

Electron Source

  • FIELD EMISSION GUN [1054]
  • OTHER [19]
  • LAB6 [3]

Film or detector model

  • GATAN K3 6K X 4K [356]
  • GATAN K2 SUMMIT 4K X 4K [197]
  • GATAN K3 BIOQUANTUM 6K X 4K [164]
  • FEI FALCON IV 4K X 4K [140]
  • GATAN K2 QUANTUM 4K X 4K [47]
  • FEI FALCON II 4K X 4K [44]
  • TFS FALCON 4I 4K X 4K [37]
  • GATAN K3 BIOCONTINUUM 6K X 4K [19]
  • FEI FALCON I 4K X 4K [12]
  • GATAN ULTRASCAN 1000 2K X 2K [12]
  • FEI FALCON III 4K X 4K [11]
  • GATAN K2 4K X 4K [7]
  • GATAN K2 BASE 4K X 4K [7]
  • GATAN K2 IS 4K X 4K [7]
  • FEI CETA 4K X 4K [6]
  • OTHER [6]
  • GATAN ULTRASCAN 4000 4K X 4K [2]
  • KODAK SO-163 FILM [2]
  • FEI EAGLE 4K X 4K [1]

EMPIAR Experiment type

  • EMDB [17]

EMPIAR Image category

  • MICROGRAPHS - MULTIFRAME [16]
  • MICROGRAPHS - SINGLE FRAME [1]

External links

  • PDB [776]
  • UniProt [746]
  • PDBe-Kb [685]
  • AlphaFold DB [637]
  • InterPro [570]
  • Gene Ontology [524]
  • ChEBI [452]
  • Pfam [446]
  • ChEMBL [384]
  • DrugBank [325]
  • Complex Portal [214]
  • EMPIAR [30]
  • CATH [21]
  • EMDB [17]
  • SCOP2 [15]
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EMD-65230
Download Map
3D View
Focused map of Type II-A CRISPR integrase prespacer catching complex, State I
CryoEM
Focused map
Release date: May 13, 2026
Resolution: 3.08 Å
EM Method: Single-particle

Li Z, Li Y, Kong J, Wu Q, Huang P, Zhang Y, Wu W, Chen M, Liu Y, Lin H, Hou L, Liu G, Zeng T, He Y, Hu C, Yang Z, Lu M, Luo M, Xiao Y

Mol Cell (2026) 86 pp. 805-816.e4 [ DOI: doi:10.1016/j.molcel.2026.01.024 Pubmed: 41702404 ]

EMD-65231
Download Map
3D View
Composite map of Type II-A CRISPR integrase prespacer catching complex, State I
Composite map
CryoEM
Release date: May 13, 2026
Resolution: 2.96 Å
EM Method: Single-particle

Li Z, Li Y, Kong J, Wu Q, Huang P, Zhang Y, Wu W, Chen M, Liu Y, Lin H, Hou L, Liu G, Zeng T, He Y, Hu C, Yang Z, Lu M, Luo M, Xiao Y

Mol Cell (2026) 86 pp. 805-816.e4 [ DOI: doi:10.1016/j.molcel.2026.01.024 Pubmed: 41702404 ]

EMD-65232
Download Map
3D View
Focused map of Type II-A CRISPR integrase prespacer catching complex, State II
CryoEM
Release date: May 13, 2026
Resolution: 3.22 Å
EM Method: Single-particle

Li Z, Li Y, Kong J, Wu Q, Huang P, Zhang Y, Wu W, Chen M, Liu Y, Lin H, Hou L, Liu G, Zeng T, He Y, Hu C, Yang Z, Lu M, Luo M, Xiao Y

Mol Cell (2026) 86 pp. 805-816.e4 [ DOI: doi:10.1016/j.molcel.2026.01.024 Pubmed: 41702404 ]

EMD-65528
Download Map
3D View
Composite map of the type III CRISPR-associated deaminase in complex cA6 and ATP, State 1
Composite map
CryoEM
Release date: May 13, 2026
Resolution: 2.74 Å
EM Method: Single-particle
Fitted PDBs: 9w1e
Q-score: 0.54

Li Z, Kong J, Wu W, Duan Y, Zhu Z, Hua C, Yan P, Cao C, Cao X, Xiao Y, Lu M, Chen M

Nucleic Acids Res (2026) 54 [ DOI: doi:10.1093/nar/gkag231 Pubmed: 41841492 ]

EMD-65529
Download Map
3D View
Consensus map of the type III CRISPR-associated deaminase in complex cA6 and ATP, State 1
CryoEM
Consensus map
Release date: May 13, 2026
Resolution: 2.81 Å
EM Method: Single-particle

Li Z, Kong J, Wu W, Duan Y, Zhu Z, Hua C, Yan P, Cao C, Cao X, Xiao Y, Lu M, Chen M

Nucleic Acids Res (2026) 54 [ DOI: doi:10.1093/nar/gkag231 Pubmed: 41841492 ]

EMD-65530
Download Map
3D View
Focused map of area 1 of the type III CRISPR-associated deaminase in complex cA6 and ATP, State 1
CryoEM
Focused map
Release date: May 13, 2026
Resolution: 3.05 Å
EM Method: Single-particle

Li Z, Kong J, Wu W, Duan Y, Zhu Z, Hua C, Yan P, Cao C, Cao X, Xiao Y, Lu M, Chen M

Nucleic Acids Res (2026) 54 [ DOI: doi:10.1093/nar/gkag231 Pubmed: 41841492 ]

EMD-65531
Download Map
3D View
Focused map of area 2 of the type III CRISPR-associated deaminase in complex cA6 and ATP, State 1
CryoEM
Focused map
Release date: May 13, 2026
Resolution: 2.78 Å
EM Method: Single-particle

Li Z, Kong J, Wu W, Duan Y, Zhu Z, Hua C, Yan P, Cao C, Cao X, Xiao Y, Lu M, Chen M

Nucleic Acids Res (2026) 54 [ DOI: doi:10.1093/nar/gkag231 Pubmed: 41841492 ]

EMD-65532
Download Map
3D View
Composite map of the type III CRISPR-associated deaminase in complex cA6 and ATP, State 2
Composite map
CryoEM
Release date: May 13, 2026
Resolution: 2.84 Å
EM Method: Single-particle
Fitted PDBs: 9w1f
Q-score: 0.506

Li Z, Kong J, Wu W, Duan Y, Zhu Z, Hua C, Yan P, Cao C, Cao X, Xiao Y, Lu M, Chen M

Nucleic Acids Res (2026) 54 [ DOI: doi:10.1093/nar/gkag231 Pubmed: 41841492 ]

EMD-65533
Download Map
3D View
Consensus map of the type III CRISPR-associated deaminase in complex cA6 and ATP, State 2
CryoEM
Consensus map
Release date: May 13, 2026
Resolution: 2.84 Å
EM Method: Single-particle

Li Z, Kong J, Wu W, Duan Y, Zhu Z, Hua C, Yan P, Cao C, Cao X, Xiao Y, Lu M, Chen M

Nucleic Acids Res (2026) 54 [ DOI: doi:10.1093/nar/gkag231 Pubmed: 41841492 ]

EMD-65534
Download Map
3D View
Focused map of area 1 of the type III CRISPR-associated deaminase in complex cA6 and ATP, State 2
CryoEM
Focused map
Release date: May 13, 2026
Resolution: 3.14 Å
EM Method: Single-particle

Li Z, Kong J, Wu W, Duan Y, Zhu Z, Hua C, Yan P, Cao C, Cao X, Xiao Y, Lu M, Chen M

Nucleic Acids Res (2026) 54 [ DOI: doi:10.1093/nar/gkag231 Pubmed: 41841492 ]

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Filter By

Current Database

  • EMDB [1076]
  • EMPIAR [17]

Current status

  • REL [1093]

Sample type

  • Complex [861]
  • Protein [847]
  • Ligand [494]
  • RNA [138]
  • Virus [117]
  • DNA [88]
  • Cell [56]
  • Cellular component [34]
  • Sample [23]
  • Other [10]
  • Tissue [1]

Organism

  • Homo sapiens [345]
  • Severe acute respiratory syndrome coronavirus [122]
  • Mus musculus [95]
  • Synthetic construct [75]
  • Human coronavirus hku1 [29]
  • Saccharomyces cerevisiae [29]
  • Escherichia coli [28]
  • Human cytomegalovirus [26]
  • Thermoanaerobaculum aquaticum [21]
  • Bos taurus [21]
  • Human immunodeficiency virus 1 [19]
  • Lama glama [18]
  • Gloeobacter violaceus [17]
  • Epstein-barr virus (strain gd1) [15]
  • Limisphaera ngatamarikiensis [15]
  • Severe acute respiratory syndrome coronavirus [13]
  • Lachnospiraceae bacterium nd2006 [12]
  • Bacillus subtilis [12]
  • Paenibacillus sp. 453mf [12]
  • Toxoplasma gondii [12]
  • Alphapapillomavirus 9 [10]
  • Thogotovirus thogotoense [10]
  • Enterovirus a [10]
  • Enterovirus a [10]
  • Epstein-barr virus (strain gd1) [9]
  • Sus scrofa [9]
  • Mycobacterium tuberculosis [8]
  • Banna virus [8]
  • Enterobacteria phage t4 [7]
  • Streptococcus pneumoniae [7]
  • Enterococcus faecalis [7]
  • Moraxella bovoculi [7]
  • Enterovirus d [7]
  • Saccharomyces cerevisiae [7]
  • Mycobacterium tuberculosis [7]
  • Human immunodeficiency virus 1 [6]
  • Clostridioides difficile [6]
  • Candidatus scalindua brodae [6]
  • (no species) [6]
  • Glycine max [6]
  • Trypanosoma brucei [6]
  • Salicola phage cgphi29 [6]
  • Oryctolagus cuniculus [6]
  • Thermoflavifilum thermophilum [5]
  • Pseudomonas aeruginosa [5]
  • Nipah virus [5]
  • Alphapapillomavirus 9 [5]
  • Streptococcus pneumoniae [5]
  • (no species) [5]
  • Rattus norvegicus [4]
  • Human papillomavirus [4]
  • Novosphingopyxis baekryungensis [4]
  • Stephanocyclus meneghinianus [4]
  • Spbetavirus spbeta [4]
  • Ephydatia fluviatilis [4]
  • Geobacter sulfurreducens [4]
  • Human herpesvirus 6b [4]
  • Rotavirus a [4]
  • Acinetobacter baumannii [4]
  • Periplaneta americana [4]
  • Lates calcarifer [4]
  • Escherichia coli [4]
  • Odocoileus virginianus [4]
  • Nostoc sp. (strain pcc 7120 / sag 25.82 / utex 2576) [3]
  • Influenza a virus [3]
  • Hepatitis e virus [3]
  • Algae metagenome [3]
  • Bat coronavirus [3]
  • Chroomonas placoidea [3]
  • Selenomonas sp. [3]
  • (no species) [3]
  • Thermus thermophilus [3]
  • Thalassiosira pseudonana [3]
  • Bos mutus grunniens [3]
  • Diguetia canities [3]
  • (no species) [3]
  • Human immunodeficiency virus 1 [3]
  • Bacillus subtilis [3]
  • Danio rerio [3]
  • Enterovirus a [3]
  • Escherichia coli [3]
  • Gallus gallus [3]
  • Kenya bat coronavirus btky72 [3]
  • Hepatitis b virus [2]
  • Alphapapillomavirus 9 [2]
  • Bacillus phage spr [2]
  • (no species) [2]
  • Measles morbillivirus [2]
  • Staphylococcus aureus [2]
  • Vibrio phage icp1_2011_a [2]
  • Middle east respiratory syndrome-related coronavirus [2]
  • Candidatus cloacimonetes bacterium adurb.bin088 [2]
  • Lachnospiraceae bacterium [2]
  • Chaetoceros neogracilis [2]
  • Mycolicibacterium smegmatis [2]
  • Metagenome [2]
  • Morbillivirus caprinae [2]
  • Bacillus halotolerans [2]
  • Erinaceus hedgehog coronavirus hku31 [2]
  • Adeno-associated virus [2]

EM Method

  • Single-particle [989]
  • Subtomogram averaging [53]
  • Helical reconstruction [18]
  • Tomography [16]

Resolution

  • < 2Å [2]
  • ≥ 2Å and < 3Å [249]
  • ≥ 3Å and < 4Å [506]
  • ≥ 4Å and < 5Å [97]
  • ≥ 5Å and < 6Å [33]
  • ≥ 6Å and < 8Å [63]
  • ≥ 8Å and < 12Å [37]
  • ≥ 12Å and < 16Å [13]
  • ≥ 16Å and < 20Å [4]
  • ≥ 20Å and < 30Å [15]
  • ≥ 30Å [41]

Model molecular weight

  • 0-50 kDa [8]
  • 50-100 kDa [41]
  • 100-250 kDa [288]
  • 250-500 kDa [245]
  • 500-1000 kDa [93]
  • 1-2 MDa [44]
  • 2-5 MDa [19]
  • 5-10 MDa [28]
  • > 10 MDa [9]

Release Date

  • 2026 [85]
  • 2025 [179]
  • 2024 [256]
  • 2023 [183]
  • 2022 [120]
  • 2021 [96]
  • 2020 [61]
  • 2019 [31]
  • 2018 [34]
  • 2017 [20]
  • 2016 [6]
  • 2015 [7]
  • 2014 [3]
  • 2011 [11]
  • 2004 [1]

Author by name

  • Li Z [1091]
  • Chen X [148]
  • Zhang Y [139]
  • Wang Y [136]
  • Wang J [125]
  • Liu Y [106]
  • Li Y [102]
  • He J [100]
  • Wang X [97]
  • Zhang C [97]
  • Xiong X [95]
  • Li J [92]
  • Liu B [89]
  • Yu H [87]
  • Zhang H [86]
  • Li S [85]
  • Yu X [78]
  • Li X [74]
  • Zhang J [72]
  • Zhang Z [71]
  • Zhang X [70]
  • Liu S [65]
  • Li M [63]
  • Wang Q [63]
  • Liu C [61]
  • Lu M [61]
  • Xiao Y [61]
  • Chen M [60]
  • Guo Q [60]
  • Wang M [60]
  • Liu X [59]
  • Chen J [58]
  • Gao X [56]
  • Liu L [56]
  • Xia N [56]
  • Chen L [55]
  • Gao Y [55]
  • Wang P [54]
  • Wu W [54]
  • Chen Q [53]
  • Kong J [53]
  • Zhang L [52]
  • Cong Y [51]
  • Li ZX [51]
  • Xu Y [51]
  • Zheng Q [51]
  • He M [50]
  • Liu W [50]
  • Yan X [50]
  • Chen Y [49]
  • Shi Y [48]
  • Wang C [48]
  • Yu Z [48]
  • Yan P [47]
  • Yan Q [47]
  • Huang Y [46]
  • Xiao YB [46]
  • Zhao J [46]
  • Huang Z [45]
  • Wang W [45]
  • Zhao H [45]
  • Zhou ZH [45]
  • Gu Y [44]
  • Hong Q [44]
  • Liu Q [44]
  • Pan X [44]
  • Yang Y [44]
  • Huang S [43]
  • Wang L [43]
  • Baker D [41]
  • Chen Z [41]
  • Wang H [41]
  • Xu S [41]
  • Yan N [41]
  • Zhao D [41]
  • Niu X [40]
  • Li ZH [39]
  • Liu J [39]
  • Li L [38]
  • Shi J [38]
  • Sun JP [38]
  • Cui Y [37]
  • Xu C [37]
  • Yang S [37]
  • Duan Y [36]
  • Hua C [36]
  • Sun H [36]
  • Xue J [36]
  • Zhang Q [36]
  • Liu D [35]
  • Xu L [35]
  • Zhu Z [35]
  • Gao P [34]
  • Huang G [34]
  • Pang J [34]
  • Wu J [34]
  • Yang H [34]
  • Zhao Y [34]
  • Chen S [33]
  • Ma Y [33]

Author by ORCID

  • Xiong X [82]
  • Guo Q [55]
  • He J [54]
  • He M [50]
  • Chen X [48]
  • Zheng Q [48]
  • Xia N [45]
  • Yu X [41]
  • Gao X [37]
  • Huang Z [37]
  • Zhang C [37]
  • Xu S [37]
  • Xiao Y [33]
  • Cong Y [32]
  • Xu Y [31]
  • Soni N [31]
  • Li Y [31]
  • Li Z [31]
  • Echeverria I [31]
  • Duquette M [31]
  • Wang Y [30]
  • Li S [30]
  • Xiao P [30]
  • Sun JP [30]
  • Chen M [30]
  • Wang X [29]
  • Yu Z [29]
  • Li J [29]
  • Hou H [29]
  • Qi Y [29]
  • Liu W [29]
  • Zhao D [29]
  • Chen X [29]
  • Yang H [29]
  • Li Z [29]
  • Li Z [28]
  • Zhang H [28]
  • Chen L [28]
  • Yan N [28]
  • Zhu R [27]
  • Gao A [25]
  • Li Z [25]
  • Shen EZ [25]
  • Baker D [24]
  • Yin Z [24]
  • Gao N [24]
  • Wu J [23]
  • Zhou ZH [23]
  • Zhang Q [22]
  • Gui M [22]
  • Li Z [22]
  • Gao P [22]
  • Cui Y [22]
  • Zhang L [22]
  • Basak S [22]
  • Wong AHM [21]
  • Rini JM [21]
  • Li Z [21]
  • Baker TS [20]
  • Nitz M [20]
  • Gilbert M [20]
  • Chen X [20]
  • Yu H [20]
  • Li Z [20]
  • Zhang J [20]
  • Wu Y [20]
  • Ma S [20]
  • Zhang Y [20]
  • Liu Y [20]
  • Jin M [20]
  • Kong J [19]
  • Wang P [19]
  • Zhou P [19]
  • Yu G [19]
  • Habib G [19]
  • Wang J [19]
  • Hu C [19]
  • Yuan H [19]
  • Ma Y [19]
  • Li Z [18]
  • Jia N [18]
  • Liu X [18]
  • Li M [18]
  • Liu L [18]
  • Courbet A [18]
  • Zhao J [18]
  • Biggin PC [17]
  • Liu Q [17]
  • Bharambe N [17]
  • Zhu X [17]
  • Liu D [17]
  • Cheng T [17]
  • Jia YL [17]
  • Li Z [17]
  • Biswas A [17]
  • Lyumkis D [17]
  • Zhao C [17]
  • Wang Y [17]
  • Hong Q [17]
  • Kvaratskhelia M [17]

Journal

  • NAT COMMUN [285]
  • NATURE [115]
  • CELL [76]
  • SCIENCE [73]
  • PNAS [61]
  • MOL CELL [52]
  • CELL RES [51]
  • SCI ADV [50]
  • NUCLEIC ACIDS RES [37]
  • TO BE PUBLISHED [35]
  • BIORXIV [31]
  • NAT MICROBIOL [26]
  • NAT CHEM BIOL [20]
  • CELL HOST MICROBE [19]
  • NAT STRUCT MOL BIOL [19]
  • J VIROL [17]
  • ADV SCI [14]
  • CELL DISCOV [14]
  • EMERG MICROBES INFECT [13]
  • EMBO J [12]
  • CELL REP [10]
  • J MOL BIOL [10]
  • LIFE SCI ALLIANCE [10]
  • J AM CHEM SOC [8]
  • SIGNAL TRANSDUCT TARGET THER [7]
  • STRUCTURE [6]
  • PROTEIN CELL [5]
  • BIOCHEMISTRY [4]
  • VACCINE [4]
  • ANGEW CHEM INT ED ENGL [3]
  • NAT MATER [3]
  • PLANT COMMUN. [3]
  • SCI TRANSL MED [3]
  • ACS PHARMACOL TRANSL SCI [2]
  • ARCH BIOCHEM BIOPHYS [2]
  • ELIFE [2]
  • FRONT ENDOCRINOL [2]
  • INT J BIOL MACROMOL [2]
  • J INTEGR PLANT BIOL [2]
  • MBIO [2]
  • MOL THER METHODS CLIN DEV [2]
  • NAT CHEM [2]
  • ACS NANO [1]
  • ACTA PHARMACOL.SIN. [1]
  • ARCHIVES OF BIOCHEMISTRY AND BIOPHYSICS [1]
  • FASEB J [1]
  • NAT COMMUN . [1]
  • PHOTOSYNTH.RES. [1]
  • PLOS BIOL [1]
  • PLOS COMPUT BIOL [1]
  • PLOS GENET [1]
  • PLOS PATHOG [1]
  • PROTEIN EXPR PURIF [1]
  • VIROL SIN [1]
  • VIRUSES [1]

Software

  • CRYOSPARC [170]
  • RELION [146]
  • CTFFIND [18]
  • GCTF [12]
  • CISTEM [10]
  • IMOD, BSOFT [10]
  • COOT [8]
  • PHENIX [4]
  • SPARX, RELION [3]
  • FREALIGN [2]
  • HELICON [2]
  • SPIDER [2]
  • UCSF CHIMERAX [2]
  • AUTO3DEM [1]
  • CAMERA [1]
  • CTFFIND3, RELION [1]
  • EMAN [1]
  • EMAN2, IMAGIC, FREALIGN [1]
  • FOLDHUNTER [1]
  • PYTOM [1]
  • SAVR [1]
  • SPARX, RELION, FREALIGN [1]
  • UCSF CHIMERA [1]
  • WARP [1]

Microscope

  • FEI TITAN KRIOS [628]
  • TFS KRIOS [171]
  • FEI TALOS ARCTICA [112]
  • FEI TECNAI F30 [51]
  • FEI POLARA 300 [29]
  • TFS GLACIOS [23]
  • JEOL CRYO ARM 300 [18]
  • FEI TECNAI ARCTICA [13]
  • FEI TITAN [8]
  • FEI TECNAI F20 [7]
  • JEOL 2100F [6]
  • FEI TECNAI 20 [2]
  • FEI TECNAI SPIRIT [2]
  • JEOL 2100 [2]
  • JEOL 4000EX [1]
  • TFS TALOS [1]
  • TFS TITAN THEMIS [1]
  • TFS TUNDRA [1]

Electron Source

  • FIELD EMISSION GUN [1054]
  • OTHER [19]
  • LAB6 [3]

Film or detector model

  • GATAN K3 6K X 4K [356]
  • GATAN K2 SUMMIT 4K X 4K [197]
  • GATAN K3 BIOQUANTUM 6K X 4K [164]
  • FEI FALCON IV 4K X 4K [140]
  • GATAN K2 QUANTUM 4K X 4K [47]
  • FEI FALCON II 4K X 4K [44]
  • TFS FALCON 4I 4K X 4K [37]
  • GATAN K3 BIOCONTINUUM 6K X 4K [19]
  • FEI FALCON I 4K X 4K [12]
  • GATAN ULTRASCAN 1000 2K X 2K [12]
  • FEI FALCON III 4K X 4K [11]
  • GATAN K2 4K X 4K [7]
  • GATAN K2 BASE 4K X 4K [7]
  • GATAN K2 IS 4K X 4K [7]
  • FEI CETA 4K X 4K [6]
  • OTHER [6]
  • GATAN ULTRASCAN 4000 4K X 4K [2]
  • KODAK SO-163 FILM [2]
  • FEI EAGLE 4K X 4K [1]

EMPIAR Experiment type

  • EMDB [17]

EMPIAR Image category

  • MICROGRAPHS - MULTIFRAME [16]
  • MICROGRAPHS - SINGLE FRAME [1]

External links

  • PDB [776]
  • UniProt [746]
  • PDBe-Kb [685]
  • AlphaFold DB [637]
  • InterPro [570]
  • Gene Ontology [524]
  • ChEBI [452]
  • Pfam [446]
  • ChEMBL [384]
  • DrugBank [325]
  • Complex Portal [214]
  • EMPIAR [30]
  • CATH [21]
  • EMDB [17]
  • SCOP2 [15]