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author:"Lee DJ"

Filter By

Current Database

  • EMDB [45]
  • EMPIAR [27]

Current status

  • REL [72]

Sample type

  • Complex [45]
  • Ligand [40]
  • Protein [40]
  • RNA [32]

Organism

  • Escherichia coli [33]
  • Homo sapiens [10]
  • Streptomyces virginiae [3]
  • Bacillus subtilis [2]
  • African swine fever virus [1]
  • Bacillus subtilis [1]
  • Escherichia coli [1]
  • Bos taurus [1]
  • Oryctolagus cuniculus [1]

EM Method

  • Single-particle [45]

Resolution

  • < 2Å [3]
  • ≥ 2Å and < 3Å [36]
  • ≥ 3Å and < 4Å [6]

Model molecular weight

  • 100-250 kDa [1]
  • 250-500 kDa [2]
  • 500-1000 kDa [4]
  • 1-2 MDa [28]
  • 2-5 MDa [5]

Release Date

  • 2025 [10]
  • 2023 [34]
  • 2022 [6]
  • 2021 [2]
  • 2020 [20]

Author by name

  • Lee DJ [72]
  • Fraser JS [66]
  • Pellegrino J [55]
  • Seiple IB [54]
  • Li Q [13]
  • Biel JT [10]
  • Borrelli K [10]
  • Brilot AF [10]
  • Chaires HA [10]
  • Chesneau O [10]
  • Chow D [10]
  • Jacobson MP [10]
  • Ji K [10]
  • Muhle E [10]
  • Murray B [10]
  • Park JE [10]
  • Shinabarger D [10]
  • Tran AA [10]
  • Wang R [10]
  • Wolfe C [10]
  • Zhang N [10]
  • Van Zundert G [10]
  • Yeon SK [6]
  • Arada A [5]
  • Arthur C [5]
  • Bajaj P [5]
  • Bonomi M [5]
  • Chen J [5]
  • Costa-mattioli M [5]
  • Croll T [5]
  • Dalwadi U [5]
  • Debeaubien NA [5]
  • Dever TE [5]
  • Dooling SW [5]
  • Frost A [5]
  • Fujimori DG [5]
  • Greene E [5]
  • Greene ER [5]
  • Hoff SE [5]
  • Kannan A [5]
  • Klepacki D [5]
  • Kollman JM [5]
  • Kuncha SK [5]
  • Lee GM [5]
  • Liu Y [5]
  • Mankin AS [5]
  • Muniz R [5]
  • Muniz RS [5]
  • Okoh J [5]
  • Park H [5]
  • Reineke LC [5]
  • Stojkovic V [5]
  • Szal T [5]
  • Thompson EM [5]
  • Tsai K [5]
  • Vazquez-laslop N [5]
  • Walter P [5]
  • Wang IC [5]
  • Yamamura H [5]
  • Young ID [5]
  • Young-baird S [5]
  • Zhou H [5]
  • Zhu PJ [5]
  • Boyce JH [3]
  • Ecker AK [3]
  • Takahashi Y [3]
  • Edmonson Q [2]
  • Elad N [2]
  • Jayaraman V [2]
  • Sharon M [2]
  • Tawfik DS [2]
  • Vimer S [2]
  • Fraser J [1]
  • Galonic Fujimori D [1]
  • Seiple I [1]

Author by ORCID

  • Fraser JS [40]
  • Lee DJ [33]
  • Pellegrino J [28]
  • Seiple IB [28]
  • Li Q [13]
  • Jacobson MP [10]
  • Chaires HA [10]
  • Muhle E [10]
  • Wang R [10]
  • Yeon SK [6]
  • Bajaj P [5]
  • Kollman JM [5]
  • Mankin AS [5]
  • Fujimori DG [5]
  • Thompson EM [5]
  • Bonomi M [5]
  • Greene E [5]
  • Vazquez-laslop N [5]
  • Young ID [5]
  • Hoff SE [5]
  • Ecker AK [3]
  • Takahashi Y [3]
  • Boyce JH [3]
  • Jayaraman V [2]
  • Vimer S [2]
  • Sharon M [2]

Journal

  • NATURE [20]
  • TO BE PUBLISHED [18]
  • BIORXIV [10]
  • NAT STRUCT MOL BIOL [5]
  • ACTA CRYSTALLOGR D STRUCT BIOL [2]
  • NAT CHEM BIOL [2]
  • PROTEIN SCI [2]

Software

  • CRYOSPARC [7]
  • CISTEM [6]

Microscope

  • FEI TITAN KRIOS [34]
  • TFS KRIOS [10]
  • FEI TALOS ARCTICA [1]

Electron Source

  • FIELD EMISSION GUN [45]

Film or detector model

  • GATAN K3 BIOQUANTUM 6K X 4K [24]
  • GATAN K2 SUMMIT 4K X 4K [11]
  • GATAN K3 6K X 4K [5]
  • TFS FALCON 4I 4K X 4K [4]
  • FEI FALCON IV 4K X 4K [1]

EMPIAR Experiment type

  • EMDB [27]

EMPIAR Image category

  • MICROGRAPHS - MULTIFRAME [27]
  • MICROGRAPHS - SINGLE FRAME [14]

External links

  • PDB [45]
  • AlphaFold DB [40]
  • PDBe-Kb [40]
  • UniProt [40]
  • Gene Ontology [39]
  • InterPro [39]
  • Pfam [38]
  • EMPIAR [28]
  • EMDB [27]
  • ChEBI [19]
  • ChEMBL [19]
  • DrugBank [19]
  • Complex Portal [5]
  • SCOP2 [1]
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Showing 1 - 10 of 72. Page 1 of 8
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EMD-49124
Download Map
3D View
Consensus reconstruction of the Dp71L-PP1A-eIF2alpha holophosphatase stabilized by G-actin/DNAseI
CryoEM
Consensus map
Release date: July 9, 2025
Resolution: 3.03 Å
EM Method: Single-particle

Reineke LC, Zhu PJ, Dalwadi U, Dooling SW, Liu Y, Wang IC, Young-Baird S, Okoh J, Kuncha SK, Zhou H, Kannan A, Park H, Debeaubien NA, Croll T, Lee DJ, Arthur C, Dever TE, Walter P, Chen J, Frost A, Costa-Mattioli M

bioRxiv (2025) [ Pubmed: 40568171 DOI: doi:10.1101/2025.02.28.640897 ]

EMD-49162
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3D View
Focused refinement of G-actin within the Dp71L-PP1A-eIF2alpha-DNAseI-G-actin complex
CryoEM
Focused map
Release date: July 9, 2025
Resolution: 3.8 Å
EM Method: Single-particle

Reineke LC, Zhu PJ, Dalwadi U, Dooling SW, Liu Y, Wang IC, Young-Baird S, Okoh J, Kuncha SK, Zhou H, Kannan A, Park H, Debeaubien NA, Croll T, Lee DJ, Arthur C, Dever TE, Walter P, Chen J, Frost A, Costa-Mattioli M

bioRxiv (2025) [ Pubmed: 40568171 DOI: doi:10.1101/2025.02.28.640897 ]

EMD-49163
Download Map
3D View
Focused refinement of the Dp71L-eIF2alpha-PP1A subcomplex within the holo-phosphatase complex.
CryoEM
Focused map
Release date: July 9, 2025
Resolution: 3.8 Å
EM Method: Single-particle

Reineke LC, Zhu PJ, Dalwadi U, Dooling SW, Liu Y, Wang IC, Young-Baird S, Okoh J, Kuncha SK, Zhou H, Kannan A, Park H, Debeaubien NA, Croll T, Lee DJ, Arthur C, Dever TE, Walter P, Chen J, Frost A, Costa-Mattioli M

bioRxiv (2025) [ Pubmed: 40568171 DOI: doi:10.1101/2025.02.28.640897 ]

EMD-49164
Download Map
3D View
Focused refinement of DNAseI within the Dp71L-eIF2alpha-PP1A-Gactin-DNAseI holo-phosphatase complex.
Focused map
CryoEM
Release date: July 9, 2025
Resolution: 3.8 Å
EM Method: Single-particle

Reineke LC, Zhu PJ, Dalwadi U, Dooling SW, Liu Y, Wang IC, Young-Baird S, Okoh J, Kuncha SK, Zhou H, Kannan A, Park H, Debeaubien NA, Croll T, Lee DJ, Arthur C, Dever TE, Walter P, Chen J, Frost A, Costa-Mattioli M

bioRxiv (2025) [ Pubmed: 40568171 DOI: doi:10.1101/2025.02.28.640897 ]

EMD-49223
Download Map
3D View
Viral protein DP71L in complex with phosphorylated eIF2alpha NTD and protein phosphatase 1A D64A , stabilized by G-actin/DNAseI
Composite map
CryoEM
Release date: July 9, 2025
Resolution: 3.03 Å
EM Method: Single-particle
Fitted PDBs: 9nb9
Q-score: 0.43

Reineke LC, Zhu PJ, Dalwadi U, Dooling SW, Liu Y, Wang IC, Young-Baird S, Okoh J, Kuncha SK, Zhou H, Kannan A, Park H, Debeaubien NA, Croll T, Lee DJ, Arthur C, Dever TE, Walter P, Chen J, Frost A, Costa-Mattioli M

bioRxiv (2025) [ Pubmed: 40568171 DOI: doi:10.1101/2025.02.28.640897 ]

EMD-70841
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3D View
Human glutamine synthetase filament under turnover conditions
CryoEM
Release date: July 2, 2025
Resolution: 2.19 Å
EM Method: Single-particle
Fitted PDBs: 9otm
Q-score: 0.6

Greene E, Muniz R, Yamamura H, Hoff SE, Bajaj P, Lee DJ, Thompson EM, Arada A, Lee GM, Bonomi M, Kollman JM, Fraser JS

bioRxiv (2025) [ DOI: doi:10.1101/2025.07.04.663231 Pubmed: 40631248 ]

EMD-70842
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3D View
Human glutamine synthetase filament bound to ATP
CryoEM
Release date: July 2, 2025
Resolution: 2.11 Å
EM Method: Single-particle
Fitted PDBs: 9otn
Q-score: 0.714

Greene E, Muniz R, Yamamura H, Hoff SE, Bajaj P, Lee DJ, Thompson EM, Arada A, Lee GM, Bonomi M, Kollman JM, Fraser JS

bioRxiv (2025) [ DOI: doi:10.1101/2025.07.04.663231 Pubmed: 40631248 ]

EMD-70843
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3D View
Human glutamine synthetase decamer under turnover conditions
CryoEM
Release date: July 2, 2025
Resolution: 2.03 Å
EM Method: Single-particle
Fitted PDBs: 9oto
Q-score: 0.623

Greene E, Muniz R, Yamamura H, Hoff SE, Bajaj P, Lee DJ, Thompson EM, Arada A, Lee GM, Bonomi M, Kollman JM, Fraser JS

bioRxiv (2025) [ DOI: doi:10.1101/2025.07.04.663231 Pubmed: 40631248 ]

EMD-70844
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3D View
Human glutamine synthetase R298A decamer under turnover conditions
CryoEM
Release date: July 2, 2025
Resolution: 1.95 Å
EM Method: Single-particle
Fitted PDBs: 9otp
Q-score: 0.638

Greene E, Muniz R, Yamamura H, Hoff SE, Bajaj P, Lee DJ, Thompson EM, Arada A, Lee GM, Bonomi M, Kollman JM, Fraser JS

bioRxiv (2025) [ DOI: doi:10.1101/2025.07.04.663231 Pubmed: 40631248 ]

EMD-70845
Download Map
3D View
Human glutamine synthetase filament apo
CryoEM
Release date: July 2, 2025
Resolution: 2.27 Å
EM Method: Single-particle
Fitted PDBs: 9otq
Q-score: 0.644

Greene E, Muniz R, Yamamura H, Hoff SE, Bajaj P, Lee DJ, Thompson EM, Arada A, Lee GM, Bonomi M, Kollman JM, Fraser JS

bioRxiv (2025) [ DOI: doi:10.1101/2025.07.04.663231 Pubmed: 40631248 ]

Sort by: Download
Showing 1 - 10 of 72. Page 1 of 8
Display:
Statistics
×

Download












































Preview first 10
Download

Filter By

Current Database

  • EMDB [45]
  • EMPIAR [27]

Current status

  • REL [72]

Sample type

  • Complex [45]
  • Ligand [40]
  • Protein [40]
  • RNA [32]

Organism

  • Escherichia coli [33]
  • Homo sapiens [10]
  • Streptomyces virginiae [3]
  • Bacillus subtilis [2]
  • African swine fever virus [1]
  • Bacillus subtilis [1]
  • Escherichia coli [1]
  • Bos taurus [1]
  • Oryctolagus cuniculus [1]

EM Method

  • Single-particle [45]

Resolution

  • < 2Å [3]
  • ≥ 2Å and < 3Å [36]
  • ≥ 3Å and < 4Å [6]

Model molecular weight

  • 100-250 kDa [1]
  • 250-500 kDa [2]
  • 500-1000 kDa [4]
  • 1-2 MDa [28]
  • 2-5 MDa [5]

Release Date

  • 2025 [10]
  • 2023 [34]
  • 2022 [6]
  • 2021 [2]
  • 2020 [20]

Author by name

  • Lee DJ [72]
  • Fraser JS [66]
  • Pellegrino J [55]
  • Seiple IB [54]
  • Li Q [13]
  • Biel JT [10]
  • Borrelli K [10]
  • Brilot AF [10]
  • Chaires HA [10]
  • Chesneau O [10]
  • Chow D [10]
  • Jacobson MP [10]
  • Ji K [10]
  • Muhle E [10]
  • Murray B [10]
  • Park JE [10]
  • Shinabarger D [10]
  • Tran AA [10]
  • Wang R [10]
  • Wolfe C [10]
  • Zhang N [10]
  • Van Zundert G [10]
  • Yeon SK [6]
  • Arada A [5]
  • Arthur C [5]
  • Bajaj P [5]
  • Bonomi M [5]
  • Chen J [5]
  • Costa-mattioli M [5]
  • Croll T [5]
  • Dalwadi U [5]
  • Debeaubien NA [5]
  • Dever TE [5]
  • Dooling SW [5]
  • Frost A [5]
  • Fujimori DG [5]
  • Greene E [5]
  • Greene ER [5]
  • Hoff SE [5]
  • Kannan A [5]
  • Klepacki D [5]
  • Kollman JM [5]
  • Kuncha SK [5]
  • Lee GM [5]
  • Liu Y [5]
  • Mankin AS [5]
  • Muniz R [5]
  • Muniz RS [5]
  • Okoh J [5]
  • Park H [5]
  • Reineke LC [5]
  • Stojkovic V [5]
  • Szal T [5]
  • Thompson EM [5]
  • Tsai K [5]
  • Vazquez-laslop N [5]
  • Walter P [5]
  • Wang IC [5]
  • Yamamura H [5]
  • Young ID [5]
  • Young-baird S [5]
  • Zhou H [5]
  • Zhu PJ [5]
  • Boyce JH [3]
  • Ecker AK [3]
  • Takahashi Y [3]
  • Edmonson Q [2]
  • Elad N [2]
  • Jayaraman V [2]
  • Sharon M [2]
  • Tawfik DS [2]
  • Vimer S [2]
  • Fraser J [1]
  • Galonic Fujimori D [1]
  • Seiple I [1]

Author by ORCID

  • Fraser JS [40]
  • Lee DJ [33]
  • Pellegrino J [28]
  • Seiple IB [28]
  • Li Q [13]
  • Jacobson MP [10]
  • Chaires HA [10]
  • Muhle E [10]
  • Wang R [10]
  • Yeon SK [6]
  • Bajaj P [5]
  • Kollman JM [5]
  • Mankin AS [5]
  • Fujimori DG [5]
  • Thompson EM [5]
  • Bonomi M [5]
  • Greene E [5]
  • Vazquez-laslop N [5]
  • Young ID [5]
  • Hoff SE [5]
  • Ecker AK [3]
  • Takahashi Y [3]
  • Boyce JH [3]
  • Jayaraman V [2]
  • Vimer S [2]
  • Sharon M [2]

Journal

  • NATURE [20]
  • TO BE PUBLISHED [18]
  • BIORXIV [10]
  • NAT STRUCT MOL BIOL [5]
  • ACTA CRYSTALLOGR D STRUCT BIOL [2]
  • NAT CHEM BIOL [2]
  • PROTEIN SCI [2]

Software

  • CRYOSPARC [7]
  • CISTEM [6]

Microscope

  • FEI TITAN KRIOS [34]
  • TFS KRIOS [10]
  • FEI TALOS ARCTICA [1]

Electron Source

  • FIELD EMISSION GUN [45]

Film or detector model

  • GATAN K3 BIOQUANTUM 6K X 4K [24]
  • GATAN K2 SUMMIT 4K X 4K [11]
  • GATAN K3 6K X 4K [5]
  • TFS FALCON 4I 4K X 4K [4]
  • FEI FALCON IV 4K X 4K [1]

EMPIAR Experiment type

  • EMDB [27]

EMPIAR Image category

  • MICROGRAPHS - MULTIFRAME [27]
  • MICROGRAPHS - SINGLE FRAME [14]

External links

  • PDB [45]
  • AlphaFold DB [40]
  • PDBe-Kb [40]
  • UniProt [40]
  • Gene Ontology [39]
  • InterPro [39]
  • Pfam [38]
  • EMPIAR [28]
  • EMDB [27]
  • ChEBI [19]
  • ChEMBL [19]
  • DrugBank [19]
  • Complex Portal [5]
  • SCOP2 [1]