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author:"Kumar V"

Filter By

Current Database

  • EMDB [95]

Current status

  • REL [95]

Sample type

  • Complex [88]
  • Protein [33]
  • RNA [22]
  • Ligand [13]
  • Virus [6]
  • Sample [5]
  • DNA [1]

Organism

  • Homo sapiens [51]
  • (no species) [26]
  • Oryctolagus cuniculus [9]
  • Saccharomyces cerevisiae [7]
  • Thermus thermophilus [4]
  • Human herpesvirus 6b [4]
  • Mycobacterium tuberculosis [3]
  • Tobacco mosaic virus [2]
  • Pseudomonas aeruginosa [2]
  • Human immunodeficiency virus 1 [1]
  • Thermus thermophilus [1]
  • Arabidopsis thaliana [1]
  • Macaca mulatta [1]

EM Method

  • Single-particle [94]
  • Helical reconstruction [1]

Resolution

  • ≥ 2Å and < 3Å [3]
  • ≥ 3Å and < 4Å [17]
  • ≥ 4Å and < 5Å [12]
  • ≥ 5Å and < 6Å [7]
  • ≥ 6Å and < 8Å [4]
  • ≥ 8Å and < 12Å [6]
  • ≥ 12Å and < 16Å [3]
  • ≥ 16Å and < 20Å [12]
  • ≥ 20Å and < 30Å [30]
  • ≥ 30Å [1]

Model molecular weight

  • 0-50 kDa [1]
  • 100-250 kDa [1]
  • 250-500 kDa [1]
  • 500-1000 kDa [4]
  • 1-2 MDa [11]
  • 2-5 MDa [13]
  • > 10 MDa [1]

Release Date

  • 2026 [6]
  • 2025 [3]
  • 2024 [32]
  • 2021 [16]
  • 2019 [31]
  • 2018 [1]
  • 2016 [3]
  • 2015 [2]
  • 2012 [1]

Author by name

  • Kumar V [95]
  • Dybkov O [40]
  • Luhrmann R [40]
  • Urlaub H [40]
  • Zhang Z [39]
  • Stark H [38]
  • Cottrell CA [37]
  • Luehrmann R [37]
  • Ward AB [37]
  • Will CL [37]
  • Kastner B [30]
  • Zhong J [29]
  • Bastidas R [27]
  • Bosinger SE [27]
  • Burton DR [27]
  • Carnathan DG [27]
  • Choe Y [27]
  • Cirelli KM [27]
  • Cossette B [27]
  • Crotty S [27]
  • Enemuo CA [27]
  • Gebru EH [27]
  • Gibson W [27]
  • Irvine DJ [27]
  • Kulp DW [27]
  • Ludwig SEJ [27]
  • Martin JT [27]
  • Melo MB [27]
  • Menis S [27]
  • Murrell B [27]
  • Nakao C [27]
  • Nogal B [27]
  • Patel NB [27]
  • Pauthner MG [27]
  • Reiss S [27]
  • Rodriguez OL [27]
  • Schief WR [27]
  • Silvestri G [27]
  • Smith ML [27]
  • Tokatlian T [27]
  • Upadhyay AA [27]
  • Viviano F [27]
  • Watson CT [27]
  • Wolabaugh AN [27]
  • Ludwig S [19]
  • Ahmed S [10]
  • Bhattacharya J [10]
  • Chandrawacar AS [10]
  • Deshpande S [10]
  • Dhiman K [10]
  • Hingankar N [10]
  • Holden LG [10]
  • Kumar N [10]
  • Kumar R [10]
  • Lee WH [10]
  • Murugavel KG [10]
  • Ozorowski G [10]
  • Richey ST [10]
  • Sewall LM [10]
  • Sewell LM [10]
  • Sok D [10]
  • Srikrishnan AK [10]
  • Fourmann JB [6]
  • Li Z [6]
  • Rigo N [6]
  • Ero R [5]
  • Ahmed T [4]
  • Alvarez-cabrera AL [4]
  • Bhushan S [4]
  • Bi GQ [4]
  • Cui Y [4]
  • Gao Y-G [4]
  • Jacobson S [4]
  • Leibovitch EC [4]
  • Liu W [4]
  • Mei Y [4]
  • Zhang Y [4]
  • Zhang YB [4]
  • Zhou ZH [4]
  • Aneja S [3]
  • Banerjee S [3]
  • Biswal B [3]
  • Biswal BK [3]
  • Cui YX [3]
  • Gao YG [3]
  • Goyal S [3]
  • Kar D [3]
  • Kumari S [3]
  • Leibovitch E [3]
  • Li ZH [3]
  • Pal RK [3]
  • Raina R [3]
  • Singla M [3]
  • Tiwari S [3]
  • Vinothkumar KR [3]
  • Wong ASW [3]
  • Chen Y [2]
  • Chinmaya KV [2]
  • Ferreira RC [2]
  • Fotiadis D [2]

Author by ORCID

  • Kumar V [38]
  • Cottrell CA [37]
  • Stark H [37]
  • Zhang Z [37]
  • Luhrmann R [37]
  • Urlaub H [33]
  • Dybkov O [31]
  • Pauthner MG [27]
  • Murrell B [27]
  • Melo MB [27]
  • Upadhyay AA [27]
  • Schief WR [27]
  • Martin JT [27]
  • Carnathan DG [27]
  • Richey ST [10]
  • Holden LG [10]
  • Lee WH [10]
  • Sewall LM [10]
  • Deshpande S [10]
  • Chandrawacar AS [10]
  • Ozorowski G [10]
  • Bhattacharya J [9]
  • Ward AB [9]
  • Hingankar N [9]
  • Liu W [4]
  • Bi GQ [4]
  • Zhang Y [4]
  • Mei Y [4]
  • Li Z [4]
  • Kumar V [4]
  • Ahmed T [4]
  • Zhou ZH [4]
  • Bhushan S [4]
  • Cui Y [4]
  • Gao YG [3]
  • Biswal B [3]
  • Raina R [3]
  • Kumari S [3]
  • Kar D [3]
  • Kumar V [3]
  • Gao Y-G [2]
  • Li Z [2]
  • Jian G-K [2]
  • Tan J [2]
  • Ala-korpela M [1]
  • Chari A [1]
  • Butcher SJ [1]
  • Ward AB [1]
  • Bhattacharya J [1]
  • Yang L [1]
  • Sze SK [1]
  • Pena V [1]
  • Jain D [1]
  • Sok D [1]
  • Kumar V [1]
  • Oorni K [1]
  • Ahmed S [1]

Journal

  • NATURE [33]
  • CELL [27]
  • PLOS PATHOG [10]
  • EMBO J [4]
  • NAT COMMUN [4]
  • TO BE PUBLISHED [4]
  • ACTA CRYSTALLOGR F STRUCT BIOL COMMUN [3]
  • PNAS [3]
  • J BIOL CHEM [2]
  • IMMUNITY [1]
  • INT J BIOL MACROMOL [1]
  • NUCLEIC ACIDS RES [1]
  • PLOS ONE [1]
  • SCIENCE [1]

Software

  • RELION [58]
  • CTFFIND [5]
  • CRYOSPARC [1]
  • EMAN [1]

Microscope

  • FEI TITAN KRIOS [44]
  • FEI TECNAI 12 [14]
  • FEI TECNAI SPIRIT [12]
  • TFS TALOS F200C [9]
  • TFS KRIOS [8]
  • FEI TECNAI F20 [6]
  • FEI TALOS ARCTICA [1]
  • TFS TITAN THEMIS [1]

Electron Source

  • FIELD EMISSION GUN [69]
  • LAB6 [26]

Film or detector model

  • FEI FALCON III 4K X 4K [42]
  • OTHER [14]
  • FEI EAGLE 2K X 2K [12]
  • FEI CETA 4K X 4K [10]
  • FEI FALCON II 4K X 4K [6]
  • GATAN K2 SUMMIT 4K X 4K [4]
  • FEI FALCON IV 4K X 4K [3]
  • GATAN K3 BIOQUANTUM 6K X 4K [2]
  • TVIPS TEMCAM-F416 4K X 4K [1]

External links

  • PDB [95]
  • AlphaFold DB [31]
  • UniProt [31]
  • PDBe-Kb [30]
  • Pfam [26]
  • Gene Ontology [25]
  • InterPro [25]
  • ChEBI [13]
  • ChEMBL [13]
  • DrugBank [13]
  • Complex Portal [8]
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Showing 1 - 10 of 95. Page 1 of 10
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EMD-53843
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3D View
Cryo-EM structure of the human pre-Bact-OTS complex whole map
CryoEM
Release date: May 27, 2026
Resolution: 8.5 Å
EM Method: Single-particle
Fitted PDBs: 9r8v
Q-score: 0.166

Zhang Z, Kumar V, Dybkov O, Zhong J, Kastner B, Henning U, Luehrmann R

To Be Published

EMD-53554
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3D View
Cryo-EM structure of the human pre-Bact-OTS complex whole map
CryoEM
Release date: May 13, 2026
Resolution: 3.12 Å
EM Method: Single-particle
Fitted PDBs: 9r3d
Q-score: 0.451

Zhang Z, Kumar V, Dybkov O, Zhong J, Kastner B, Henning U, Luehrmann R

To Be Published

EMD-57762
Download Map
3D View
TMV Map using Pulsed Illumination
CryoEM
Release date: May 6, 2026
Resolution: 5.62 Å
EM Method: Single-particle

Kumar V, Radecke J, Chinmaya KV, Mohammed I, Ferreira RC, Harder D, Fotiadis D, Stahlberg H

To Be Published

EMD-57764
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3D View
TMV Map using Random Conventional Illumination
CryoEM
Release date: May 6, 2026
Resolution: 3.45 Å
EM Method: Single-particle

Kumar V, Radecke J, Chinmaya KV, Mohammed I, Ferreira RC, Harder D, Fotiadis D, Stahlberg H

To Be Published

EMD-53117
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3D View
LY12 Main Morphology
CryoEM
Release date: April 15, 2026
Resolution: 2.86 Å
EM Method: Helical reconstruction
Fitted PDBs: 9qfm
Q-score: 0.579

Kumar V, Stoyanov N, Kaushik V, Kumar S, Schmidt M, Fandrich M, Segal D

Int J Biol Macromol (2026) 360 pp. 151751-151751 [ DOI: doi:10.1016/j.ijbiomac.2026.151751 Pubmed: 41932473 ]

EMD-66199
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3D View
Cryo-EM structure of Sigma28-RNAP open promoter complex from Pseudomonas aeruginosa
CryoEM
Release date: Feb. 25, 2026
Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 9wsm
Q-score: 0.474

Sheenu N, Kumar V, Sahoo PK, Kandiah E, Jain D

Nucleic Acids Res (2026) 54 [ DOI: doi:10.1093/nar/gkaf1414 Pubmed: 41521663 ]

EMD-63588
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Imidazole glycerol phosphate dehydratase from Mycobacterium tuberculosis, apo structure
CryoEM
Release date: June 18, 2025
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 9m2p
Q-score: 0.582

Raina R, Kar D, Singla M, Tiwari S, Kumari S, Aneja S, Kumar V, Banerjee S, Goyal S, Pal RK, Vinothkumar KR, Biswal B

Acta Crystallogr F Struct Biol Commun (2025) 81 pp. 297-305 [ DOI: doi:10.1107/S2053230X25004595 Pubmed: 40478632 ]

EMD-63589
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Imidazole glycerol phosphate dehydratase from Mycobacterium tuberculosis, in complex with aminotriazole
CryoEM
Release date: June 18, 2025
Resolution: 2.8 Å
EM Method: Single-particle
Fitted PDBs: 9m2q
Q-score: 0.616

Raina R, Kar D, Singla M, Tiwari S, Kumari S, Aneja S, Kumar V, Banerjee S, Goyal S, Pal RK, Vinothkumar KR, Biswal B

Acta Crystallogr F Struct Biol Commun (2025) 81 pp. 297-305 [ DOI: doi:10.1107/S2053230X25004595 Pubmed: 40478632 ]

EMD-63590
Download Map
3D View
Imidazole glycerol phosphate dehydratase from Mycobacterium tuberculosis, apo structure
CryoEM
Release date: June 18, 2025
Resolution: 2.2 Å
EM Method: Single-particle
Fitted PDBs: 9m2r
Q-score: 0.708

Raina R, Kar D, Singla M, Tiwari S, Kumari S, Aneja S, Kumar V, Banerjee S, Goyal S, Pal RK, Vinothkumar KR, Biswal B

Acta Crystallogr F Struct Biol Commun (2025) 81 pp. 297-305 [ DOI: doi:10.1107/S2053230X25004595 Pubmed: 40478632 ]

EMD-41072
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Human leukocyte antigen bound by two alloreactive antibody Fabs
CryoEM
Release date: Dec. 25, 2024
Resolution: 3.14 Å
EM Method: Single-particle
Fitted PDBs: 8t6m
Q-score: 0.498

Killian Jr JT, King RG, Lucander ACK, Kizziah JL, Fucile CF, Diaz-Avalos R, Qiu S, Silva-Sanchez A, Mousseau BJ, Macon KJ, Callahan AR, Yang G, Hossain ME, Akther J, Good DB, Kelso S, Houp JA, Rosenblum F, Porrett PM, Ong SC, Kumar V, Saphire EO, Kearney JF, Randall TD, Rosenberg AF, Green TJ, Lund FE

Immunity (2025) 58 pp. 3040-3060.e12 [ DOI: doi:10.1016/j.immuni.2025.10.014 Pubmed: 41289995 ]

Sort by: Download
Showing 1 - 10 of 95. Page 1 of 10
Display:
Statistics
×

Download











































Preview first 10
Download

Filter By

Current Database

  • EMDB [95]

Current status

  • REL [95]

Sample type

  • Complex [88]
  • Protein [33]
  • RNA [22]
  • Ligand [13]
  • Virus [6]
  • Sample [5]
  • DNA [1]

Organism

  • Homo sapiens [51]
  • (no species) [26]
  • Oryctolagus cuniculus [9]
  • Saccharomyces cerevisiae [7]
  • Thermus thermophilus [4]
  • Human herpesvirus 6b [4]
  • Mycobacterium tuberculosis [3]
  • Tobacco mosaic virus [2]
  • Pseudomonas aeruginosa [2]
  • Human immunodeficiency virus 1 [1]
  • Thermus thermophilus [1]
  • Arabidopsis thaliana [1]
  • Macaca mulatta [1]

EM Method

  • Single-particle [94]
  • Helical reconstruction [1]

Resolution

  • ≥ 2Å and < 3Å [3]
  • ≥ 3Å and < 4Å [17]
  • ≥ 4Å and < 5Å [12]
  • ≥ 5Å and < 6Å [7]
  • ≥ 6Å and < 8Å [4]
  • ≥ 8Å and < 12Å [6]
  • ≥ 12Å and < 16Å [3]
  • ≥ 16Å and < 20Å [12]
  • ≥ 20Å and < 30Å [30]
  • ≥ 30Å [1]

Model molecular weight

  • 0-50 kDa [1]
  • 100-250 kDa [1]
  • 250-500 kDa [1]
  • 500-1000 kDa [4]
  • 1-2 MDa [11]
  • 2-5 MDa [13]
  • > 10 MDa [1]

Release Date

  • 2026 [6]
  • 2025 [3]
  • 2024 [32]
  • 2021 [16]
  • 2019 [31]
  • 2018 [1]
  • 2016 [3]
  • 2015 [2]
  • 2012 [1]

Author by name

  • Kumar V [95]
  • Dybkov O [40]
  • Luhrmann R [40]
  • Urlaub H [40]
  • Zhang Z [39]
  • Stark H [38]
  • Cottrell CA [37]
  • Luehrmann R [37]
  • Ward AB [37]
  • Will CL [37]
  • Kastner B [30]
  • Zhong J [29]
  • Bastidas R [27]
  • Bosinger SE [27]
  • Burton DR [27]
  • Carnathan DG [27]
  • Choe Y [27]
  • Cirelli KM [27]
  • Cossette B [27]
  • Crotty S [27]
  • Enemuo CA [27]
  • Gebru EH [27]
  • Gibson W [27]
  • Irvine DJ [27]
  • Kulp DW [27]
  • Ludwig SEJ [27]
  • Martin JT [27]
  • Melo MB [27]
  • Menis S [27]
  • Murrell B [27]
  • Nakao C [27]
  • Nogal B [27]
  • Patel NB [27]
  • Pauthner MG [27]
  • Reiss S [27]
  • Rodriguez OL [27]
  • Schief WR [27]
  • Silvestri G [27]
  • Smith ML [27]
  • Tokatlian T [27]
  • Upadhyay AA [27]
  • Viviano F [27]
  • Watson CT [27]
  • Wolabaugh AN [27]
  • Ludwig S [19]
  • Ahmed S [10]
  • Bhattacharya J [10]
  • Chandrawacar AS [10]
  • Deshpande S [10]
  • Dhiman K [10]
  • Hingankar N [10]
  • Holden LG [10]
  • Kumar N [10]
  • Kumar R [10]
  • Lee WH [10]
  • Murugavel KG [10]
  • Ozorowski G [10]
  • Richey ST [10]
  • Sewall LM [10]
  • Sewell LM [10]
  • Sok D [10]
  • Srikrishnan AK [10]
  • Fourmann JB [6]
  • Li Z [6]
  • Rigo N [6]
  • Ero R [5]
  • Ahmed T [4]
  • Alvarez-cabrera AL [4]
  • Bhushan S [4]
  • Bi GQ [4]
  • Cui Y [4]
  • Gao Y-G [4]
  • Jacobson S [4]
  • Leibovitch EC [4]
  • Liu W [4]
  • Mei Y [4]
  • Zhang Y [4]
  • Zhang YB [4]
  • Zhou ZH [4]
  • Aneja S [3]
  • Banerjee S [3]
  • Biswal B [3]
  • Biswal BK [3]
  • Cui YX [3]
  • Gao YG [3]
  • Goyal S [3]
  • Kar D [3]
  • Kumari S [3]
  • Leibovitch E [3]
  • Li ZH [3]
  • Pal RK [3]
  • Raina R [3]
  • Singla M [3]
  • Tiwari S [3]
  • Vinothkumar KR [3]
  • Wong ASW [3]
  • Chen Y [2]
  • Chinmaya KV [2]
  • Ferreira RC [2]
  • Fotiadis D [2]

Author by ORCID

  • Kumar V [38]
  • Cottrell CA [37]
  • Stark H [37]
  • Zhang Z [37]
  • Luhrmann R [37]
  • Urlaub H [33]
  • Dybkov O [31]
  • Pauthner MG [27]
  • Murrell B [27]
  • Melo MB [27]
  • Upadhyay AA [27]
  • Schief WR [27]
  • Martin JT [27]
  • Carnathan DG [27]
  • Richey ST [10]
  • Holden LG [10]
  • Lee WH [10]
  • Sewall LM [10]
  • Deshpande S [10]
  • Chandrawacar AS [10]
  • Ozorowski G [10]
  • Bhattacharya J [9]
  • Ward AB [9]
  • Hingankar N [9]
  • Liu W [4]
  • Bi GQ [4]
  • Zhang Y [4]
  • Mei Y [4]
  • Li Z [4]
  • Kumar V [4]
  • Ahmed T [4]
  • Zhou ZH [4]
  • Bhushan S [4]
  • Cui Y [4]
  • Gao YG [3]
  • Biswal B [3]
  • Raina R [3]
  • Kumari S [3]
  • Kar D [3]
  • Kumar V [3]
  • Gao Y-G [2]
  • Li Z [2]
  • Jian G-K [2]
  • Tan J [2]
  • Ala-korpela M [1]
  • Chari A [1]
  • Butcher SJ [1]
  • Ward AB [1]
  • Bhattacharya J [1]
  • Yang L [1]
  • Sze SK [1]
  • Pena V [1]
  • Jain D [1]
  • Sok D [1]
  • Kumar V [1]
  • Oorni K [1]
  • Ahmed S [1]

Journal

  • NATURE [33]
  • CELL [27]
  • PLOS PATHOG [10]
  • EMBO J [4]
  • NAT COMMUN [4]
  • TO BE PUBLISHED [4]
  • ACTA CRYSTALLOGR F STRUCT BIOL COMMUN [3]
  • PNAS [3]
  • J BIOL CHEM [2]
  • IMMUNITY [1]
  • INT J BIOL MACROMOL [1]
  • NUCLEIC ACIDS RES [1]
  • PLOS ONE [1]
  • SCIENCE [1]

Software

  • RELION [58]
  • CTFFIND [5]
  • CRYOSPARC [1]
  • EMAN [1]

Microscope

  • FEI TITAN KRIOS [44]
  • FEI TECNAI 12 [14]
  • FEI TECNAI SPIRIT [12]
  • TFS TALOS F200C [9]
  • TFS KRIOS [8]
  • FEI TECNAI F20 [6]
  • FEI TALOS ARCTICA [1]
  • TFS TITAN THEMIS [1]

Electron Source

  • FIELD EMISSION GUN [69]
  • LAB6 [26]

Film or detector model

  • FEI FALCON III 4K X 4K [42]
  • OTHER [14]
  • FEI EAGLE 2K X 2K [12]
  • FEI CETA 4K X 4K [10]
  • FEI FALCON II 4K X 4K [6]
  • GATAN K2 SUMMIT 4K X 4K [4]
  • FEI FALCON IV 4K X 4K [3]
  • GATAN K3 BIOQUANTUM 6K X 4K [2]
  • TVIPS TEMCAM-F416 4K X 4K [1]

External links

  • PDB [95]
  • AlphaFold DB [31]
  • UniProt [31]
  • PDBe-Kb [30]
  • Pfam [26]
  • Gene Ontology [25]
  • InterPro [25]
  • ChEBI [13]
  • ChEMBL [13]
  • DrugBank [13]
  • Complex Portal [8]