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author:"Kovtun O"

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Current Database

  • EMDB [30]
  • EMPIAR [2]

Current status

  • REL [32]

Sample type

  • Complex [29]
  • Protein [20]
  • Ligand [3]
  • Cell [1]

Organism

  • Homo sapiens [12]
  • Mus musculus [8]
  • Rattus norvegicus [8]
  • Chaetomium thermophilum [7]
  • Chaetomium thermophilum [6]
  • Sus scrofa [4]
  • Chlamydomonas reinhardtii [1]
  • Escherichia coli [1]

EM Method

  • Subtomogram averaging [22]
  • Tomography [5]
  • Single-particle [3]

Resolution

  • ≥ 3Å and < 4Å [1]
  • ≥ 4Å and < 5Å [1]
  • ≥ 6Å and < 8Å [3]
  • ≥ 8Å and < 12Å [19]
  • ≥ 12Å and < 16Å [1]
  • ≥ 30Å [1]

Model molecular weight

  • 100-250 kDa [9]
  • 250-500 kDa [1]
  • 500-1000 kDa [1]
  • 1-2 MDa [1]

Release Date

  • 2022 [4]
  • 2021 [10]
  • 2020 [8]
  • 2018 [10]

Author by name

  • Briggs JAG [32]
  • Kovtun O [32]
  • Owen DJ [31]
  • Leneva N [19]
  • Dickson VK [12]
  • Kelly BT [12]
  • Ariotti N [10]
  • Bykov YS [10]
  • Collins BM [10]
  • Engel BD [10]
  • Kane Dickson V [10]
  • Morado DR [10]
  • Schaffer M [10]
  • Teasdale RD [10]
  • Evans PR [4]
  • Fritzsche M [4]
  • Gray SR [4]
  • Honing S [4]
  • Kadlecova Z [4]
  • Kamenicky J [4]
  • Kaufman JGG [4]
  • Korobchevskaya K [4]
  • Owen D [4]
  • Qu K [4]
  • Sroubek F [4]
  • Traub LM [4]
  • Umasankar PK [4]
  • Wrobel AG [4]
  • Zaccai NR [4]
  • Briggs JA [2]
  • Bertram J [1]
  • Brandt LTL [1]
  • Chen ZA [1]
  • Engel ED [1]
  • Lang K [1]
  • Maslen SL [1]
  • Munro S [1]
  • Ohashi Y [1]
  • Perisic O [1]
  • Rappsilber J [1]
  • Rohan TS [1]
  • Skehel M [1]
  • Tremel S [1]
  • Williams RL [1]
  • Von Wrisberg Mk [1]

Author by ORCID

  • Kovtun O [30]
  • Briggs JAG [30]
  • Owen DJ [29]
  • Leneva N [17]
  • Dickson VK [12]
  • Kelly BT [12]
  • Teasdale RD [10]
  • Engel BD [10]
  • Collins BM [10]
  • Bykov YS [10]
  • Ariotti N [10]
  • Morado DR [8]
  • Kaufman JGG [4]
  • Umasankar PK [4]
  • Kadlecova Z [4]
  • Sroubek F [4]
  • Zaccai NR [4]
  • Qu K [4]
  • Wrobel AG [4]
  • Fritzsche M [4]
  • Gray SR [4]
  • Munro S [1]
  • Williams RL [1]
  • Maslen SL [1]
  • Lang K [1]
  • Ohashi Y [1]
  • Skehel M [1]
  • Perisic O [1]
  • Tremel S [1]
  • Von Wrisberg Mk [1]
  • Chen ZA [1]
  • Brandt LTL [1]

Journal

  • SCI ADV [21]
  • NATURE [10]
  • NAT COMMUN [1]

Software

  • AV3 [15]
  • TOM [15]
  • IMOD [8]
  • CTFFIND [7]
  • DYNAMO [4]
  • NOVACTF [4]
  • PEET [4]
  • SUBTOM [2]
  • MATLAB [1]
  • RELION [1]

Microscope

  • FEI TITAN KRIOS [27]
  • TFS KRIOS [3]

Electron Source

  • FIELD EMISSION GUN [30]

Film or detector model

  • GATAN K2 QUANTUM 4K X 4K [21]
  • GATAN K3 BIOQUANTUM 6K X 4K [6]
  • GATAN K3 6K X 4K [2]
  • FEI FALCON III 4K X 4K [1]

EMPIAR Experiment type

  • EMDB [2]

EMPIAR Image category

  • MICROGRAPHS - MULTIFRAME [2]
  • TILT SERIES [2]

External links

  • PDB [30]
  • AlphaFold DB [14]
  • PDBe-Kb [14]
  • UniProt [14]
  • Gene Ontology [12]
  • InterPro [12]
  • Pfam [12]
  • EMPIAR [6]
  • Complex Portal [3]
  • EMDB [2]
  • SCOP2 [2]
  • ChEBI [1]
  • ChEMBL [1]
  • DrugBank [1]
Sort by: Download
Showing 1 - 10 of 32. Page 1 of 4
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EMD-14517
Download Map
3D View
Chimaera of AP2 with FCHO2 linker domain as a fusion on Cmu2 subunit
CryoEM
Release date: May 11, 2022
Resolution: 4.16 Å
EM Method: Single-particle
Fitted PDBs: 7z5c
Q-score: 0.424
Similar entry percentile: 84%

Zaccai NR, Kadlecova Z, Dickson VK, Korobchevskaya K, Kamenicky J, Kovtun O, Umasankar PK, Wrobel AG, Kaufman JGG, Gray SR, Qu K, Evans PR, Fritzsche M, Sroubek F, Honing S, Briggs JAG, Kelly BT, Owen DJ, Traub LM

Sci Adv (2022) 8 pp. eabn2018-eabn2018 [ DOI: doi:10.1126/sciadv.abn2018 Pubmed: 35486718 ]

EMD-14518
Download Map
3D View
Chimaera of AP2 with FCHO2 linker domain, N1-N2 enriched population
CryoEM
Release date: May 11, 2022
Resolution: 6.7 Å
EM Method: Single-particle

Zaccai NR, Kadlecova Z, Dickson VK, Korobchevskaya K, Kamenicky J, Kovtun O, Umasankar PK, Wrobel AG, Kaufman JGG, Gray SR, Qu K, Evans PR, Fritzsche M, Sroubek F, Honing S, Briggs JAG, Kelly BT, Owen DJ, Traub LM

Sci Adv (2022) 8 pp. eabn2018-eabn2018 [ DOI: doi:10.1126/sciadv.abn2018 Pubmed: 35486718 ]

EMD-14525
Download Map
3D View
AP2 adaptor protein recruited on the membrane in the presence of FCHO2 linker
CryoEM
Release date: May 11, 2022
Resolution: 9.9 Å
EM Method: Tomography

Zaccai NR, Kadlecova Z, Dickson VK, Korobchevskaya K, Kamenicky J, Kovtun O, Umasankar PK, Wrobel AG, Kaufman JGG, Gray SR, Qu K, Evans PR, Fritzsche M, Sroubek F, Honing S, Briggs JAG, Kelly BT, Owen DJ, Traub LM

Sci Adv (2022) 8 pp. eabn2018-eabn2018 [ DOI: doi:10.1126/sciadv.abn2018 Pubmed: 35486718 ]

EMD-14526
Download Map
3D View
AP2 on the membrane without cargo peptide
CryoEM
Release date: May 11, 2022
Resolution: 12.0 Å
EM Method: Subtomogram averaging

Zaccai NR, Kadlecova Z, Dickson VK, Korobchevskaya K, Kamenicky J, Kovtun O, Umasankar PK, Wrobel AG, Kaufman JGG, Gray SR, Qu K, Evans PR, Fritzsche M, Sroubek F, Honing S, Briggs JAG, Kelly BT, Owen DJ, Traub LM

Sci Adv (2022) 8 pp. eabn2018-eabn2018 [ DOI: doi:10.1126/sciadv.abn2018 Pubmed: 35486718 ]

EMPIAR-10631
Related EMDB
EMD-12224 EMD-12225 EMD-12223
Cryo-electron tomography of the fungal membrane-assembled retromer:Grd19 coat containing Kex2 cargo motif
Release date: July 9, 2021
Dataset size: 347.7 GB
Experiment type: EMDB

Leneva N, Kovtun O, Morado DR, Briggs JAG, Owen DJ

Sci Adv (2021) 7 [ Pubmed: 33762348 DOI: 10.1126/sciadv.abf8598 ]

Image sets:
  • Corrected, aligned, dose-filtered and order-sorted tilt series for the membrane-reconstituted fungal retromer:Grd19 complex in the presence of cargo-signal containing C-portion of the Kex2 cargo.
  • Raw image frames for the fungal retromer:Grd19 coat assembled on the Kex2 cargo-containing membranes
  • Corrected, aligned and order-sorted tilt series for the membrane-reconstituted fungal retromer:Grd19 complex in the presence of cargo-signal containing C-portion of the Kex2 cargo.
EMPIAR-10633
Related EMDB
EMD-12221 EMD-12222 EMD-12220
Cryo-electron tomography of the metazoan membrane-assembled retromer:SNX3 coat containing Wls cargo motif
Release date: April 14, 2021
Dataset size: 764.9 GB
Experiment type: EMDB

Leneva N, Kovtun O, Morado DR, Briggs JAG, Owen DJ

Sci Adv (2021) 7 [ Pubmed: 33762348 DOI: 10.1126/sciadv.abf8598 ]

Image sets:
  • Corrected, aligned, dose-filtered and order-sorted tilt series for the metazoan retromer:SNX3 coat assembled on the Wls cargo-containing membranes
  • Raw image frames for the metazoan retromer:SNX3 coat assembled on the Wls cargo-containing membranes
  • Corrected, aligned and order-sorted tilt series for the metazoan retromer:SNX3 coat assembled on the Wls cargo-containing membranes
EMD-12222
Download Map
3D View
Raw data
EMPIAR-10633
tomogram of membrane tubules coated with metazoan retromer:SNX3 in the presence of Wls cargo.
CryoEM
Release date: March 31, 2021
EM Method: Tomography

Leneva N, Kovtun O, Morado DR, Briggs JAG, Owen DJ

Sci Adv (2021) 7 [ Pubmed: 33762348 DOI: doi:10.1126/sciadv.abf8598 ]

EMD-12225
Download Map
3D View
Raw data
EMPIAR-10631
tomogram of membrane tubules coated with fungal retromer:Grd19 in the presence of Kex2 cargo.
CryoEM
Release date: March 31, 2021
EM Method: Tomography

Leneva N, Kovtun O, Morado DR, Briggs JAG, Owen DJ

Sci Adv (2021) 7 [ Pubmed: 33762348 DOI: doi:10.1126/sciadv.abf8598 ]

EMD-12214
Download Map
3D View
human complex II-BATS bound to membrane-attached Rab5a-GTP
CryoEM
Release date: March 3, 2021
Resolution: 9.8 Å
EM Method: Subtomogram averaging
Fitted PDBs: 7bl1
Q-score: 0.204
Similar entry percentile: 96%

Tremel S, Ohashi Y, Morado DR, Bertram J, Perisic O, Brandt LTL, von Wrisberg MK, Chen ZA, Maslen SL, Kovtun O, Skehel M, Rappsilber J, Lang K, Munro S, Briggs JAG, Williams RL

Nat Commun (2021) 12 pp. 1564-1564 [ DOI: doi:10.1038/s41467-021-21695-2 Pubmed: 33692360 ]

EMD-12221
Download Map
3D View
Raw data
EMPIAR-10633
VPS26 dimer region of metazoan membrane-assembled retromer:SNX3 complex
CryoEM
Release date: March 3, 2021
Resolution: 9.5 Å
EM Method: Subtomogram averaging
Fitted PDBs: 7blo
Q-score: 0.15
Similar entry percentile: 84%

Leneva N, Kovtun O, Morado DR, Briggs JAG, Owen DJ

Sci Adv (2021) 7 [ Pubmed: 33762348 DOI: doi:10.1126/sciadv.abf8598 ]

Sort by: Download
Showing 1 - 10 of 32. Page 1 of 4
Display:
Statistics
×

Download



Preview 10 entries View All Download file

Filter By

Current Database

  • EMDB [30]
  • EMPIAR [2]

Current status

  • REL [32]

Sample type

  • Complex [29]
  • Protein [20]
  • Ligand [3]
  • Cell [1]

Organism

  • Homo sapiens [12]
  • Mus musculus [8]
  • Rattus norvegicus [8]
  • Chaetomium thermophilum [7]
  • Chaetomium thermophilum [6]
  • Sus scrofa [4]
  • Chlamydomonas reinhardtii [1]
  • Escherichia coli [1]

EM Method

  • Subtomogram averaging [22]
  • Tomography [5]
  • Single-particle [3]

Resolution

  • ≥ 3Å and < 4Å [1]
  • ≥ 4Å and < 5Å [1]
  • ≥ 6Å and < 8Å [3]
  • ≥ 8Å and < 12Å [19]
  • ≥ 12Å and < 16Å [1]
  • ≥ 30Å [1]

Model molecular weight

  • 100-250 kDa [9]
  • 250-500 kDa [1]
  • 500-1000 kDa [1]
  • 1-2 MDa [1]

Release Date

  • 2022 [4]
  • 2021 [10]
  • 2020 [8]
  • 2018 [10]

Author by name

  • Briggs JAG [32]
  • Kovtun O [32]
  • Owen DJ [31]
  • Leneva N [19]
  • Dickson VK [12]
  • Kelly BT [12]
  • Ariotti N [10]
  • Bykov YS [10]
  • Collins BM [10]
  • Engel BD [10]
  • Kane Dickson V [10]
  • Morado DR [10]
  • Schaffer M [10]
  • Teasdale RD [10]
  • Evans PR [4]
  • Fritzsche M [4]
  • Gray SR [4]
  • Honing S [4]
  • Kadlecova Z [4]
  • Kamenicky J [4]
  • Kaufman JGG [4]
  • Korobchevskaya K [4]
  • Owen D [4]
  • Qu K [4]
  • Sroubek F [4]
  • Traub LM [4]
  • Umasankar PK [4]
  • Wrobel AG [4]
  • Zaccai NR [4]
  • Briggs JA [2]
  • Bertram J [1]
  • Brandt LTL [1]
  • Chen ZA [1]
  • Engel ED [1]
  • Lang K [1]
  • Maslen SL [1]
  • Munro S [1]
  • Ohashi Y [1]
  • Perisic O [1]
  • Rappsilber J [1]
  • Rohan TS [1]
  • Skehel M [1]
  • Tremel S [1]
  • Williams RL [1]
  • Von Wrisberg Mk [1]

Author by ORCID

  • Kovtun O [30]
  • Briggs JAG [30]
  • Owen DJ [29]
  • Leneva N [17]
  • Dickson VK [12]
  • Kelly BT [12]
  • Teasdale RD [10]
  • Engel BD [10]
  • Collins BM [10]
  • Bykov YS [10]
  • Ariotti N [10]
  • Morado DR [8]
  • Kaufman JGG [4]
  • Umasankar PK [4]
  • Kadlecova Z [4]
  • Sroubek F [4]
  • Zaccai NR [4]
  • Qu K [4]
  • Wrobel AG [4]
  • Fritzsche M [4]
  • Gray SR [4]
  • Munro S [1]
  • Williams RL [1]
  • Maslen SL [1]
  • Lang K [1]
  • Ohashi Y [1]
  • Skehel M [1]
  • Perisic O [1]
  • Tremel S [1]
  • Von Wrisberg Mk [1]
  • Chen ZA [1]
  • Brandt LTL [1]

Journal

  • SCI ADV [21]
  • NATURE [10]
  • NAT COMMUN [1]

Software

  • AV3 [15]
  • TOM [15]
  • IMOD [8]
  • CTFFIND [7]
  • DYNAMO [4]
  • NOVACTF [4]
  • PEET [4]
  • SUBTOM [2]
  • MATLAB [1]
  • RELION [1]

Microscope

  • FEI TITAN KRIOS [27]
  • TFS KRIOS [3]

Electron Source

  • FIELD EMISSION GUN [30]

Film or detector model

  • GATAN K2 QUANTUM 4K X 4K [21]
  • GATAN K3 BIOQUANTUM 6K X 4K [6]
  • GATAN K3 6K X 4K [2]
  • FEI FALCON III 4K X 4K [1]

EMPIAR Experiment type

  • EMDB [2]

EMPIAR Image category

  • MICROGRAPHS - MULTIFRAME [2]
  • TILT SERIES [2]

External links

  • PDB [30]
  • AlphaFold DB [14]
  • PDBe-Kb [14]
  • UniProt [14]
  • Gene Ontology [12]
  • InterPro [12]
  • Pfam [12]
  • EMPIAR [6]
  • Complex Portal [3]
  • EMDB [2]
  • SCOP2 [2]
  • ChEBI [1]
  • ChEMBL [1]
  • DrugBank [1]