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author:"Koonin EV"

Filter By

Current Database

  • EMDB [52]
  • EMPIAR [7]

Current status

  • REL [59]

Sample type

  • Complex [44]
  • Protein [34]
  • Ligand [28]
  • RNA [27]
  • DNA [14]
  • Virus [8]

Organism

  • Synthetic construct [14]
  • Escherichia coli [10]
  • Kehishuvirus primarius [8]
  • Homo sapiens [8]
  • Escherichia phage phiv-1 [5]
  • Salmonella enterica [5]
  • Lachnospiraceae bacterium nd2006 [3]
  • Metagenome [3]
  • Pyrococcus abyssi [3]
  • Desulfonema ishimotonii [3]
  • Bacterium [2]
  • Clostridium acetobutylicum [2]
  • Rtpvirus zl19 [2]
  • Desulfovirgula thermocuniculi [2]
  • Thermanaerosceptrum fracticalcis [1]
  • Nitrospirota bacterium [1]
  • Tissierellia bacterium [1]
  • Thermoproteota archaeon [1]
  • Dna molecule [1]
  • Uncultured prevotellaceae bacterium [1]
  • (no species) [1]

EM Method

  • Single-particle [52]

Resolution

  • ≥ 2Å and < 3Å [14]
  • ≥ 3Å and < 4Å [34]
  • ≥ 4Å and < 5Å [3]
  • ≥ 6Å and < 8Å [1]

Release Date

  • 2026 [18]
  • 2025 [21]
  • 2024 [1]
  • 2023 [8]
  • 2022 [11]

Author by name

  • Koonin EV [57]
  • Makarova KS [26]
  • Gao A [21]
  • Lee H [21]
  • Wu Y [17]
  • Zhang F [16]
  • Chiu W [13]
  • Das R [13]
  • Kretsch RC [13]
  • Nye G [13]
  • Shabalina SA [13]
  • Macrae RK [11]
  • Wilkinson ME [11]
  • Isayama Y [9]
  • Kato K [9]
  • Nishimasu H [9]
  • Okazaki S [9]
  • Antson AA [8]
  • Bayfield OW [8]
  • Chen J [8]
  • Chiu C [8]
  • Evans SA [8]
  • Feng L [8]
  • Hawkins DEDP [8]
  • Hill C [8]
  • Kannan S [8]
  • Khokhlova EV [8]
  • Luengo-woods S [8]
  • Shkoporov AN [8]
  • Smith JLR [8]
  • Wolf YI [8]
  • Xiao H [8]
  • Yutin N [8]
  • Zhang J [8]
  • Gao L [5]
  • Gao LA [5]
  • Ishikawa J [5]
  • Nishizawa T [5]
  • Strecker J [5]
  • Altae-tran H [4]
  • Amen T [4]
  • Bravo JPK [4]
  • Cardenas Rodriguez J [4]
  • Faure G [4]
  • Hiraizumi M [4]
  • Kaganovich D [4]
  • Kogay R [4]
  • Mondi R [4]
  • Nagahata N [4]
  • Naji A [4]
  • Nobrega FL [4]
  • Patel DJ [4]
  • Shmakov SA [4]
  • Taylor DW [4]
  • Teplova M [4]
  • Todeschini TC [4]
  • Yamada S [4]
  • Yamashita K [4]
  • Zhang Z [4]
  • Abudayyeh OO [3]
  • Adachi S [3]
  • Alfonse L [3]
  • Catchpole R [3]
  • Catchpole RJ [3]
  • Chu X [3]
  • Ditommaso T [3]
  • Fuchs R [3]
  • Garrett S [3]
  • Garrity AJ [3]
  • Gootenberg JS [3]
  • Graveley B [3]
  • Graveley BR [3]
  • Jiang K [3]
  • Ke A [3]
  • Kobayashi TA [3]
  • Koonin E [3]
  • Maben Z [3]
  • Makarova K [3]
  • Morinaga H [3]
  • Munoz G [3]
  • Nureki O [3]
  • Omura SN [3]
  • Onishi K [3]
  • Ornstein A [3]
  • Pittman C [3]
  • Pittman CC [3]
  • Schmitt-ulms C [3]
  • Terns M [3]
  • Terns MP [3]
  • Wells L [3]
  • Xu C [3]
  • Zhao P [3]
  • Zhou W [3]
  • Demircioglu FE [2]
  • Evgeniou L [2]
  • Flam-shepherd D [2]
  • Hirano S [2]
  • Kappel K [2]
  • Kim S [2]
  • Quinones-olvera N [2]

Journal

  • NATURE [27]
  • BIORXIV [17]
  • SCIENCE [11]
  • RES SQ [8]
  • CELL [6]
  • NAT STRUCT MOL BIOL [4]
  • CELL REP [3]
  • TO BE PUBLISHED [3]
  • NAT COMMUN [1]

Software

  • CRYOSPARC [27]
  • RELION [15]
  • CTFFIND [1]

Microscope

  • TFS KRIOS [29]
  • FEI TITAN KRIOS [18]
  • FEI TALOS ARCTICA [5]

Electron Source

  • FIELD EMISSION GUN [52]

Film or detector model

  • GATAN K3 6K X 4K [17]
  • FEI FALCON IV 4K X 4K [13]
  • GATAN K3 BIOQUANTUM 6K X 4K [13]
  • FEI FALCON III 4K X 4K [9]

EMPIAR Experiment type

  • EMDB [7]

EMPIAR Image category

  • MICROGRAPHS - SINGLE FRAME [4]
  • PICKED PARTICLES - SINGLE FRAME - PROCESSED [4]
  • MICROGRAPHS - MULTIFRAME [3]

External links

  • AlphaFold DB [14]
  • EMPIAR [9]
  • EMDB [7]
Sort by: Download
Showing 1 - 10 of 59. Page 1 of 6
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Preview 10 entries View All Download file
EMD-69297
Download Map
3D View
Cryo-EM structure of the UnCas12m4a-crRNA-tgDNA ternary complex in the TS-cleaving state
CryoEM
Release date: Sept. 2, 2026
Resolution: 2.69 Å
EM Method: Single-particle
Fitted PDBs: 23vu
Q-score: 0.623
Similar entry percentile: 91%

Morinaga H, Omura SN, Alfonse L, Ornstein A, Kobayashi TA, Onishi K, Makarova KS, Shmakov SA, Munoz G, Garrity AJ, DiTommaso T, Koonin EV, Maben Z, Nureki O

To Be Published

EMD-69298
Download Map
3D View
Cryo-EM structure of the UnCas12m4a-crRNA-tgDNA ternary complex in the NTS-cleaving state
CryoEM
Release date: Sept. 2, 2026
Resolution: 2.84 Å
EM Method: Single-particle
Fitted PDBs: 23vv
Q-score: 0.581
Similar entry percentile: 86%

Morinaga H, Omura SN, Alfonse L, Ornstein A, Kobayashi TA, Onishi K, Makarova KS, Shmakov SA, Munoz G, Garrity AJ, DiTommaso T, Koonin EV, Maben Z, Nureki O

To Be Published

EMD-69299
Download Map
3D View
Cryo-EM structure of the TfCas12m3-crRNA-tgDNA ternary complex
CryoEM
Release date: Sept. 2, 2026
Resolution: 2.39 Å
EM Method: Single-particle
Fitted PDBs: 23vw
Q-score: 0.629
Similar entry percentile: 80%

Morinaga H, Omura SN, Alfonse L, Ornstein A, Kobayashi TA, Onishi K, Makarova KS, Shmakov SA, Munoz G, Garrity AJ, DiTommaso T, Koonin EV, Maben Z, Nureki O

To Be Published

EMD-48771
Download Map
3D View
Cryo-EM Structure of Apo SeAvs7
CryoEM
Release date: Aug. 26, 2026
Resolution: 2.72 Å
EM Method: Single-particle
Fitted PDBs: 9n00
Q-score: 0.458
Similar entry percentile: 22%

Lee H, Luengo-Woods S, Zhang J, Makarova KS, Wolf YI, Chiu C, Evans SA, Chen J, Xiao H, Feng L, Koonin EV, Gao A

Nature (2026) 657 pp. 735-743 [ Pubmed: 42527607 DOI: doi:10.1038/s41586-026-10852-6 ]

EMD-48772
Download Map
3D View
Cryo-EM structure of SeAvs7 MCP EFTu1 monomeric complex
CryoEM
Release date: Aug. 26, 2026
Resolution: 3.67 Å
EM Method: Single-particle
Fitted PDBs: 9n01
Q-score: 0.461
Similar entry percentile: 71%

Lee H, Luengo-Woods S, Zhang J, Makarova KS, Wolf YI, Chiu C, Evans SA, Chen J, Xiao H, Feng L, Koonin EV, Gao A

Nature (2026) 657 pp. 735-743 [ Pubmed: 42527607 DOI: doi:10.1038/s41586-026-10852-6 ]

EMD-73001
Download Map
3D View
Cryo-EM structure of SeAvs7 MCP EFTu1 tetrameric complex
Composite map
CryoEM
Release date: Aug. 26, 2026
Resolution: 3.43 Å
EM Method: Single-particle
Fitted PDBs: 9yix
Q-score: 0.319
Similar entry percentile: 10%

Lee H, Luengo-Woods S, Zhang J, Makarova KS, Wolf YI, Chiu C, Evans SA, Chen J, Xiao H, Feng L, Koonin EV, Gao A

Nature (2026) 657 pp. 735-743 [ Pubmed: 42527607 DOI: doi:10.1038/s41586-026-10852-6 ]

EMD-73002
Download Map
3D View
Cryo-EM structure of SeAvs7 MCP EFTu1 monomeric complex-Map B
Focused map
CryoEM
Release date: Aug. 26, 2026
Resolution: 4.01 Å
EM Method: Single-particle

Lee H, Luengo-Woods S, Zhang J, Makarova KS, Wolf YI, Chiu C, Evans SA, Chen J, Xiao H, Feng L, Koonin EV, Gao A

Nature (2026) 657 pp. 735-743 [ Pubmed: 42527607 DOI: doi:10.1038/s41586-026-10852-6 ]

EMD-73003
Download Map
3D View
Cryo-EM structure of SeAvs7 MCP EFTu1 tetrameric complex -Map A
Consensus map
CryoEM
Release date: Aug. 26, 2026
Resolution: 3.43 Å
EM Method: Single-particle

Lee H, Luengo-Woods S, Zhang J, Makarova KS, Wolf YI, Chiu C, Evans SA, Chen J, Xiao H, Feng L, Koonin EV, Gao A

Nature (2026) 657 pp. 735-743 [ Pubmed: 42527607 DOI: doi:10.1038/s41586-026-10852-6 ]

EMD-73004
Download Map
3D View
Cryo-EM structure of SeAvs7 MCP EFTu1 tetrameric complex-Map E
Focused map
CryoEM
Release date: Aug. 26, 2026
Resolution: 3.7 Å
EM Method: Single-particle

Lee H, Luengo-Woods S, Zhang J, Makarova KS, Wolf YI, Chiu C, Evans SA, Chen J, Xiao H, Feng L, Koonin EV, Gao A

Nature (2026) 657 pp. 735-743 [ Pubmed: 42527607 DOI: doi:10.1038/s41586-026-10852-6 ]

EMD-73005
Download Map
3D View
Cryo-EM structure of SeAvs7 MCP EFTu1 tetrameric complex-Map D
Focused map
CryoEM
Release date: Aug. 26, 2026
Resolution: 3.77 Å
EM Method: Single-particle

Lee H, Luengo-Woods S, Zhang J, Makarova KS, Wolf YI, Chiu C, Evans SA, Chen J, Xiao H, Feng L, Koonin EV, Gao A

Nature (2026) 657 pp. 735-743 [ Pubmed: 42527607 DOI: doi:10.1038/s41586-026-10852-6 ]

Sort by: Download
Showing 1 - 10 of 59. Page 1 of 6
Display:
Statistics
×

Download



Preview 10 entries View All Download file

Filter By

Current Database

  • EMDB [52]
  • EMPIAR [7]

Current status

  • REL [59]

Sample type

  • Complex [44]
  • Protein [34]
  • Ligand [28]
  • RNA [27]
  • DNA [14]
  • Virus [8]

Organism

  • Synthetic construct [14]
  • Escherichia coli [10]
  • Kehishuvirus primarius [8]
  • Homo sapiens [8]
  • Escherichia phage phiv-1 [5]
  • Salmonella enterica [5]
  • Lachnospiraceae bacterium nd2006 [3]
  • Metagenome [3]
  • Pyrococcus abyssi [3]
  • Desulfonema ishimotonii [3]
  • Bacterium [2]
  • Clostridium acetobutylicum [2]
  • Rtpvirus zl19 [2]
  • Desulfovirgula thermocuniculi [2]
  • Thermanaerosceptrum fracticalcis [1]
  • Nitrospirota bacterium [1]
  • Tissierellia bacterium [1]
  • Thermoproteota archaeon [1]
  • Dna molecule [1]
  • Uncultured prevotellaceae bacterium [1]
  • (no species) [1]

EM Method

  • Single-particle [52]

Resolution

  • ≥ 2Å and < 3Å [14]
  • ≥ 3Å and < 4Å [34]
  • ≥ 4Å and < 5Å [3]
  • ≥ 6Å and < 8Å [1]

Release Date

  • 2026 [18]
  • 2025 [21]
  • 2024 [1]
  • 2023 [8]
  • 2022 [11]

Author by name

  • Koonin EV [57]
  • Makarova KS [26]
  • Gao A [21]
  • Lee H [21]
  • Wu Y [17]
  • Zhang F [16]
  • Chiu W [13]
  • Das R [13]
  • Kretsch RC [13]
  • Nye G [13]
  • Shabalina SA [13]
  • Macrae RK [11]
  • Wilkinson ME [11]
  • Isayama Y [9]
  • Kato K [9]
  • Nishimasu H [9]
  • Okazaki S [9]
  • Antson AA [8]
  • Bayfield OW [8]
  • Chen J [8]
  • Chiu C [8]
  • Evans SA [8]
  • Feng L [8]
  • Hawkins DEDP [8]
  • Hill C [8]
  • Kannan S [8]
  • Khokhlova EV [8]
  • Luengo-woods S [8]
  • Shkoporov AN [8]
  • Smith JLR [8]
  • Wolf YI [8]
  • Xiao H [8]
  • Yutin N [8]
  • Zhang J [8]
  • Gao L [5]
  • Gao LA [5]
  • Ishikawa J [5]
  • Nishizawa T [5]
  • Strecker J [5]
  • Altae-tran H [4]
  • Amen T [4]
  • Bravo JPK [4]
  • Cardenas Rodriguez J [4]
  • Faure G [4]
  • Hiraizumi M [4]
  • Kaganovich D [4]
  • Kogay R [4]
  • Mondi R [4]
  • Nagahata N [4]
  • Naji A [4]
  • Nobrega FL [4]
  • Patel DJ [4]
  • Shmakov SA [4]
  • Taylor DW [4]
  • Teplova M [4]
  • Todeschini TC [4]
  • Yamada S [4]
  • Yamashita K [4]
  • Zhang Z [4]
  • Abudayyeh OO [3]
  • Adachi S [3]
  • Alfonse L [3]
  • Catchpole R [3]
  • Catchpole RJ [3]
  • Chu X [3]
  • Ditommaso T [3]
  • Fuchs R [3]
  • Garrett S [3]
  • Garrity AJ [3]
  • Gootenberg JS [3]
  • Graveley B [3]
  • Graveley BR [3]
  • Jiang K [3]
  • Ke A [3]
  • Kobayashi TA [3]
  • Koonin E [3]
  • Maben Z [3]
  • Makarova K [3]
  • Morinaga H [3]
  • Munoz G [3]
  • Nureki O [3]
  • Omura SN [3]
  • Onishi K [3]
  • Ornstein A [3]
  • Pittman C [3]
  • Pittman CC [3]
  • Schmitt-ulms C [3]
  • Terns M [3]
  • Terns MP [3]
  • Wells L [3]
  • Xu C [3]
  • Zhao P [3]
  • Zhou W [3]
  • Demircioglu FE [2]
  • Evgeniou L [2]
  • Flam-shepherd D [2]
  • Hirano S [2]
  • Kappel K [2]
  • Kim S [2]
  • Quinones-olvera N [2]

Journal

  • NATURE [27]
  • BIORXIV [17]
  • SCIENCE [11]
  • RES SQ [8]
  • CELL [6]
  • NAT STRUCT MOL BIOL [4]
  • CELL REP [3]
  • TO BE PUBLISHED [3]
  • NAT COMMUN [1]

Software

  • CRYOSPARC [27]
  • RELION [15]
  • CTFFIND [1]

Microscope

  • TFS KRIOS [29]
  • FEI TITAN KRIOS [18]
  • FEI TALOS ARCTICA [5]

Electron Source

  • FIELD EMISSION GUN [52]

Film or detector model

  • GATAN K3 6K X 4K [17]
  • FEI FALCON IV 4K X 4K [13]
  • GATAN K3 BIOQUANTUM 6K X 4K [13]
  • FEI FALCON III 4K X 4K [9]

EMPIAR Experiment type

  • EMDB [7]

EMPIAR Image category

  • MICROGRAPHS - SINGLE FRAME [4]
  • PICKED PARTICLES - SINGLE FRAME - PROCESSED [4]
  • MICROGRAPHS - MULTIFRAME [3]

External links

  • AlphaFold DB [14]
  • EMPIAR [9]
  • EMDB [7]